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Loss of Pathogenicity and Evidence of Horizontal Gene Transfer in Colletotrichum gloeosporioides From a Medicinal Plant
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Using geneid to Identify Genes
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Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences
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Genome sequencing of Colletotrichum gloeosporioides ES026 reveals plausible pathway of HupA
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AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS
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Genomes of Subaerial Zygnematophyceae Provide Insights into Land Plant Evolution
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TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data
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Major episodes of horizontal gene transfer drove the evolution of land plants
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Piperine production by endophytic fungus Colletotrichum gloeosporioides isolated from Piper nigrum
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Proteomics changes during the incompatible interaction between cowpea and Colletotrichum gloeosporioides (Penz.) Penz and Sacc
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Endophytic fungi of wild banana (Musa acuminata) at Doi Suthep Pui National Park, Thailand
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Insecticidal Activity of Huperzine A from the New Zealand Clubmoss, Lycopodium varium
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Gene Ontology: tool for the unification of biology
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TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders
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PILER: identification and classification of genomic repeats
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De novo identification of repeat families in large genomes
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Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
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Infernal 1.1: 100-fold faster RNA homology searches
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Finding de novo methylated DNA motifs
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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
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The COG database: a tool for genome-scale analysis of protein functions and evolution
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The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
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The KEGG resource for deciphering the genome
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
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LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
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MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences
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MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
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Rfam 12.0: updates to the RNA families database
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The Pfam protein families database: towards a more sustainable future
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Using intron position conservation for homology-based gene prediction
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Global Aspects of pacC Regulation of Pathogenicity Genes inColletotrichum gloeosporioidesas Revealed by Transcriptome Analysis
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CgDN3: An Essential Pathogenicity Gene ofColletotrichum gloeosporioidesNecessary to Avert a Hypersensitive-Like Response in the HostStylosanthes guianensis
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First Report of Anthracnose Caused by Colletotrichum gossypii on Tomato in Hainan, China
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Identification and Observation of Infection Processes of Colletotrichum Species Associated with Pearl Plum Anthracnose in Guangxi, China
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First Report of Grapefruit Rot Caused by Colletotrichum gloeosporioides and C. karsti in France
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First Report of Colletotrichum truncatum Causing Anthracnose of Tomato in China
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First Record of Neofusicoccum luteum and Colletotrichum gloeosporioides Causing Anthracnose and Stem End Rot on Avocado Fruits in Greece
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First Report of Colletotrichum truncatum Causing Anthracnose of Begonia in China
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Identification of Colletotrichum Species Associated with Anthracnose Disease of Strawberry in Sichuan Province, China
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First Report of Colletotrichum fructicola Causing Anthracnose on Rosa chinensis in China
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Fast Quenching the Burst of Host Salicylic Acid Is Common in Early Strawberry/ Colletotrichum fructicola Interaction
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Genome Sequence and Comparative Analysis of Colletotrichum gloeosporioides Isolated from Liriodendron Leaves
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Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation
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Biochemical Analysis of Plant Protection Afforded by a Nonpathogenic Endophytic Mutant of Colletotrichum magna1
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Assembly of high‐quality genomes of the locoweed Oxytropis ochrocephala and its endophyte Alternaria oxytropis provides new evidence for their symbiotic relationship and swainsonine biosynthesis
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The Top 10 fungal pathogens in molecular plant pathology
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A genomic scan for divergent selection in a secondary contact zone between Atlantic and Gulf of Mexico oysters, Crassostrea virginica
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Ethylene‐induced stomatal closure in Arabidopsis occurs via AtrbohF‐mediated hydrogen peroxide synthesis
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Natural and Synthetic Huperzine A: Effect on Cholinergic Function in Vitro and in Vivoa
inferredcites →https://doi.org/10.1111/nph.12085openalex-snapshot
Comparative genomic and transcriptomic analyses reveal the hemibiotrophic stage shift of Colletotrichum fungi
inferredcites →https://doi.org/10.1111/nph.20040openalex-snapshot
Post‐transfer adaptation of HGT ‐acquired genes and contribution to guanine metabolic diversification in land plants
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Receptor-associated kinases control the lipid provisioning program in plant–fungal symbiosis
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Effect of Ammonia Production by Colletotrichum gloeosporioides on pelB Activation, Pectate Lyase Secretion, and Fruit Pathogenicity
inferredcites →https://doi.org/10.1128/jb.182.17.4688-4695.2000openalex-snapshot
Two Novel Genes Induced by Hard-Surface Contact of Colletotrichum gloeosporioides Conidia
inferredcites →https://doi.org/10.1159/000084979openalex-snapshot
Repbase Update, a database of eukaryotic repetitive elements
inferredcites →https://doi.org/10.1186/1471-2180-11-260openalex-snapshot
Cloning and characterization of a pectin lyase gene from Colletotrichum lindemuthianumand comparative phylogenetic/structural analyses with genes from phytopathogenic and saprophytic/opportunistic microorganisms
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Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
inferredcites →https://doi.org/10.1186/s12864-016-3480-xopenalex-snapshot
Comparative analysis of the mitochondrial genomes of Colletotrichum gloeosporioides sensu lato: insights into the evolution of a fungal species complex interacting with diverse plants
inferredcites →https://doi.org/10.1186/s12870-021-03042-1openalex-snapshot
Transcriptome and proteome analysis of walnut (Juglans regia L.) fruit in response to infection by Colletotrichum gloeosporioides
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1186/s43008-019-0001-yopenalex-snapshot
Identification, prevalence and pathogenicity of Colletotrichum species causing anthracnose of Capsicum annuum in Asia
inferredcites →https://doi.org/10.1186/s43008-022-00107-0openalex-snapshot
First genome-scale insights into the virulence of the snow mold causal fungus Microdochium nivale
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Endophytic fungi related to the ash dieback causal agent encode signatures of pathogenicity on European ash
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Construction of Customized Sub-Databases from NCBI-nr Database for Rapid Annotation of Huge Metagenomic Datasets Using a Combined BLAST and MEGAN Approach
inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-snapshot
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
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Fungal Endophytes of Alpinia officinarum Rhizomes: Insights on Diversity and Variation across Growth Years, Growth Sites, and the Inner Active Chemical Concentration
inferredcites →https://doi.org/10.1371/journal.pone.0120809openalex-snapshot
De Novo RNA Sequencing and Transcriptome Analysis of Colletotrichum gloeosporioides ES026 Reveal Genes Related to Biosynthesis of Huperzine A
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Pathogenic adaptations of Colletotrichum fungi revealed by genome wide gene family evolutionary analyses
inferredcites →https://doi.org/10.1590/s1517-83822013000400031openalex-snapshot
Cgl-SLT2 is required for appressorium formation, sporulation and pathogenicity in Colletotrichum gloeosporioide
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The Role of Virulence Factors in the Pathogenicity of Colletotrichum sp.
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The Colletotrichum gloeosporioides species complex
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NADPH Oxidases Play a Role in Pathogenicity via the Regulation of F-Actin Organization in Colletotrichum gloeosporioides
inferredcites →https://doi.org/10.3389/fmicb.2016.00906openalex-snapshot
A Friendly Relationship between Endophytic Fungi and Medicinal Plants: A Systematic Review
inferredcites →https://doi.org/10.3389/fmicb.2018.03237openalex-snapshot
Genomic Characterization Provides New Insights Into the Biosynthesis of the Secondary Metabolite Huperzine a in the Endophyte Colletotrichum gloeosporioides Cg01
inferredcites →https://doi.org/10.3389/fmicb.2020.01484openalex-snapshot
Pathogenic Adaptations Revealed by Comparative Genome Analyses of Two Colletotrichum spp., the Causal Agent of Anthracnose in Rubber Tree
inferredcites →https://doi.org/10.3389/fmicb.2021.629387openalex-snapshot
CgNPG1 as a Novel Pathogenic Gene of Colletotrichum gloeosporioides From Hevea brasiliensis in Mycelial Growth, Conidiation, and the Invasive Structures Development
inferredcites →https://doi.org/10.3389/fmicb.2021.743776openalex-snapshot
Distinct Transcriptional Programs Underlie Differences in Virulence of Isolates on Host Plants in a Fungal Pathogen, Colletotrichum gloeosporioides
inferredcites →https://doi.org/10.3389/fpls.2021.791033openalex-snapshot
Endophytic Fungi: From Symbiosis to Secondary Metabolite Communications or Vice Versa?
inferredcites →https://doi.org/10.3390/antiox8120580openalex-snapshot
Effect of Marine Bacteria and Ulvan on the Activity of Antioxidant Defense Enzymes and the Bio-Protection of Papaya Fruit against Colletotrichum gloeosporioides
inferredcites →https://doi.org/10.3390/ijms23126379openalex-snapshot
Effector Sntf2 Interacted with Chloroplast-Related Protein Mdycf39 Promoting the Colonization of Colletotrichum gloeosporioides in Apple Leaf
inferredcites →https://doi.org/10.3390/jof7070509openalex-snapshot
Differential Physiological Prerequisites and Gene Expression Profiles of Conidial Anastomosis Tube and Germ Tube Formation in Colletotrichum gloeosporioides
inferredcites →https://doi.org/10.3390/jof7080677openalex-snapshot
Physcomitrium patens Infection by Colletotrichum gloeosporioides: Understanding the Fungal–Bryophyte Interaction by Microscopy, Phenomics and RNA Sequencing
inferredcites →https://doi.org/10.3390/jof9050503openalex-snapshot
The Involvement of the Laccase Gene Cglac13 in Mycelial Growth, Germ Tube Development, and the Pathogenicity of Colletotrichum gloeosporioides from Mangoes
inferredcites →https://doi.org/10.3390/plants12152873openalex-snapshot
Insights into Grape Ripe Rot: A Focus on the Colletotrichum gloeosporioides Species Complex and Its Management Strategies
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What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Genus-wide comparative genomics of Colletotrichum reveals evolutionary conservation and divergent ecological adaptations
inferred← citeshttps://doi.org/10.1016/b978-0-443-27628-6.00016-4openalex-snapshot
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Marine endophytic fungi from mangroves: Chemical diversity, biosynthetic pathways, and therapeutic potential
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Advances in the study of endophytic microorganisms in medicinal plants and their secondary metabolites
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Untapped microbial factories for next-generation therapeutics: Endophytic fungi of medicinal plants
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