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Transcriptomic analysis of metabolic function in the giant kelp, M acrocystis pyrifera, across depth and season
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/j.1537-2197.1952.tb14251.xopenalex-snapshot
PHOTOSYNTHESIS, GROWTH AND TRANSLOCATION IN GIANT KELP
inferredcites →https://doi.org/10.1007/bf00019098openalex-snapshot
The Chlamydomonas reinhardtii LI818 gene represents a distant relative of the cabI/II genes that is regulated during the cell cycle and in response to illumination
inferredcites →https://doi.org/10.1007/bf00290449openalex-snapshot
The gene family encoding the fucoxanthin chlorophyll proteins from the brown alga Macrocystis pyrifera
inferredcites →https://doi.org/10.1007/bf00393004openalex-snapshot
The light environment in a giant kelp forest: influence of Macrocystis pyrifera on spatial and temporal variability
inferredcites →https://doi.org/10.1007/bf00397251openalex-snapshot
Growth and utilization of internal nitrogen reserves by the giant kelp Macrocystis pyrifera in a low-nitrogen environment
inferredcites →https://doi.org/10.1007/bf00428571openalex-snapshot
Photosynthetic characteristics of giant kelp (Macrocystis pyrifera) determined in situ
inferredcites →https://doi.org/10.1007/bf01379001openalex-snapshot
Quantification of nuclear DNA and G-C content in marine macroalgae by flow cytometry of isolated nuclei
inferredcites →https://doi.org/10.1016/0198-0149(86)90109-3openalex-snapshot
Predicting plant nutrient concentrations from temperature and sigma-t in the upper kilometer of the world ocean
inferredcites →https://doi.org/10.1016/0272-7714(85)90077-0openalex-snapshot
The temporal and spatial distribution of underwater quantum irradiation in a southern California kelp forest
inferredcites →https://doi.org/10.1016/0968-0004(91)90072-4openalex-snapshot
Chlorophyll a/b-binding proteins: an extended family
inferredcites →https://doi.org/10.1016/1011-1344(95)07189-9openalex-snapshot
Effects of solar and artificial UV irradiation on pigments and assimilation of 15N ammonium and 15N nitrate by macroalgae
inferredcites →https://doi.org/10.1016/j.aquatox.2009.02.012openalex-snapshot
Omics in algae: Paving the way for a systems biological understanding of algal stress phenomena?
inferredcites →https://doi.org/10.1016/j.ecss.2012.04.026openalex-snapshot
Vertical distribution of Macrocystis pyrifera nutrient exposure in southern California
inferredcites →https://doi.org/10.1016/j.jphotobiol.2011.04.004openalex-snapshot
Photoprotection in the brown alga Macrocystis pyrifera: Evolutionary implications
inferredcites →https://doi.org/10.1016/s0278-4343(97)00054-xopenalex-snapshot
Currents in the high drag environment of a coastal kelp stand off California
inferredcites →https://doi.org/10.1016/s0378-1097(01)00089-1openalex-snapshot
In vitro antibacterial activity of some aliphatic aldehydes from Olea europaea L.
inferredcites →https://doi.org/10.1023/a:1006489920808openalex-snapshot
Characterisation of complementary DNAs from the expressed sequence tag analysis of life cycle stages of Laminaria digitata (Phaeophyceae)
inferredcites →https://doi.org/10.1029/2011gl049549openalex-snapshot
Amplification of hypoxic and acidic events by La Niña conditions on the continental shelf off California
inferredcites →https://doi.org/10.1038/ismej.2009.72openalex-snapshot
Systematic artifacts in metagenomes from complex microbial communities
inferredcites →https://doi.org/10.1038/nature07410openalex-snapshot
The Phaeodactylum genome reveals the evolutionary history of diatom genomes
inferredcites →https://doi.org/10.1038/nature08587openalex-snapshot
An ancient light-harvesting protein is critical for the regulation of algal photosynthesis
inferredcites →https://doi.org/10.1038/nature09016openalex-snapshot
The Ectocarpus genome and the independent evolution of multicellularity in brown algae
inferredcites →https://doi.org/10.1046/j.1529-8817.1999.3561237.xopenalex-snapshot
ISOLATION AND CHARACTERIZATION OF SIX cDNAs INVOLVED IN CARBON METABOLISM IN LAMINARIA DIGITATA (PHAEOPHYCEAE)
inferredcites →https://doi.org/10.1073/pnas.0403984101openalex-snapshot
The timing of eukaryotic evolution: Does a relaxed molecular clock reconcile proteins and fossils?
inferredcites →https://doi.org/10.1073/pnas.1016106108openalex-snapshot
Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics
inferredcites →https://doi.org/10.1093/molbev/msh075openalex-snapshot
A Molecular Timeline for the Origin of Photosynthetic Eukaryotes
inferredcites →https://doi.org/10.1093/nar/gkq747openalex-snapshot
FragGeneScan: predicting genes in short and error-prone reads
inferredcites →https://doi.org/10.1093/pcp/pch083openalex-snapshot
Overexpression of Spermidine Synthase Enhances Tolerance to Multiple Environmental Stresses and Up-Regulates the Expression of Various Stress-Regulated Genes in Transgenic Arabidopsis thaliana
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
inferredcites →https://doi.org/10.1101/pdb.prot5409openalex-snapshot
Identifying and Removing Artificial Replicates from 454 Pyrosequencing Data
inferredcites →https://doi.org/10.1104/pp.84.4.1325openalex-snapshot
Photosystem Stoichiometry and Excitation Distribution in Chloroplasts from Surface and Minus 20 Meter Blades of Macrocystis pyrifera, the Giant Kelp
inferredcites →https://doi.org/10.1111/j.0022-3646.1983.00118.xopenalex-snapshot
COMPOSITION OF SIEVE TUBE SAP FROM MACROCYSTIS PYRIFERA (PHAEOPHYTA) WITH EMPHASIS ON THE INORGANIC CONSTITUENTS1
inferredcites →https://doi.org/10.1111/j.0022-3646.2003.03-148.xopenalex-snapshot
MACROALGAL CANDIDATES FOR GENOMICS 1
inferredcites →https://doi.org/10.1111/j.1469-8137.2006.01951.xopenalex-snapshot
The giant kelp Macrocystis pyrifera presents a different nonphotochemical quenching control than higher plants
inferredcites →https://doi.org/10.1111/j.1469-8137.2007.02304.xopenalex-snapshot
Development and physiology of the brown alga Ectocarpus siliculosus: two centuries of research
inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03345.xopenalex-snapshot
Central and storage carbon metabolism of the brown alga Ectocarpus siliculosus : insights into the origin and evolution of storage carbohydrates in Eukaryotes
inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03454.xopenalex-snapshot
The Ectocarpus genome sequence: insights into brown algal biology and the evolutionary diversity of the eukaryotes
inferredcites →https://doi.org/10.1111/j.1529-8817.1966.tb04590.xopenalex-snapshot
TRANSLOCATION IN MACROCYSTIS. III. COMPOSITION OF SIEVE TUBE EXUDATE AND IDENTIFICATION OF THE MAJOR C14‐LABELED PRODUCTS1
inferredcites →https://doi.org/10.1111/j.1529-8817.2004.04058.xopenalex-snapshot
PROPOSAL OF ECTOCARPUS SILICULOSUS (ECTOCARPALES, PHAEOPHYCEAE) AS A MODEL ORGANISM FOR BROWN ALGAL GENETICS AND GENOMICS1,2
inferredcites →https://doi.org/10.1111/j.1529-8817.2005.00150.xopenalex-snapshot
IDENTIFICATION OF STRESS GENE TRANSCRIPTS INLAMINARIA DIGITATA(PHAEOPHYCEAE) PROTOPLAST CULTURES BY EXPRESSED SEQUENCE TAG ANALYSIS1
inferredcites →https://doi.org/10.1111/j.1529-8817.2006.00287.xopenalex-snapshot
PHOTOSYNTHETIC PERFORMANCE, LIGHT ABSORPTION, AND PIGMENT COMPOSITION OF MACROCYSTIS PYRIFERA (LAMINARIALES, PHAEOPHYCEAE) BLADES FROM DIFFERENT DEPTHS 1
inferredcites →https://doi.org/10.1111/j.1529-8817.2007.00435.xopenalex-snapshot
GENOMIC INSIGHTS INTO EVOLUTIONARY RELATIONSHIPS AMONG HETEROKONT LINEAGES EMPHASIZING THE PHAEOPHYCEAE1
inferredcites →https://doi.org/10.1126/science.1101156openalex-snapshot
The Genome of the Diatom Thalassiosira Pseudonana : Ecology, Evolution, and Metabolism
inferredcites →https://doi.org/10.1126/science.182.4116.975openalex-snapshot
Seaweeds: Their Productivity and Strategy for Growth
inferredcites →https://doi.org/10.1146/annurev.arplant.47.1.685openalex-snapshot
THE CHLOROPHYLL-CAROTENOID PROTEINS OF OXYGENIC PHOTOSYNTHESIS
inferredcites →https://doi.org/10.1146/annurev.es.16.110185.001243openalex-snapshot
Ecology of Kelp Communities
inferredcites →https://doi.org/10.1186/1471-2105-11-564openalex-snapshot
Empirical bayes analysis of sequencing-based transcriptional profiling without replicates
inferredcites →https://doi.org/10.1186/1471-2148-10-365openalex-snapshot
Chlorophyll-binding proteins revisited - a multigenic family of light-harvesting and stress proteins from a brown algal perspective
inferredcites →https://doi.org/10.1186/1471-2199-9-75openalex-snapshot
Normalisation genes for expression analyses in the brown alga model Ectocarpus siliculosus
inferredcites →https://doi.org/10.1186/gb-2002-3-7-research0034openalex-snapshot
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
inferredcites →https://doi.org/10.1271/bbb.80062openalex-snapshot
Recent Advances in Ascorbate Biosynthesis and the Physiological Significance of Ascorbate Peroxidase in Photosynthesizing Organisms
inferredcites →https://doi.org/10.1371/journal.pone.0000383openalex-snapshot
Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes
inferredcites →https://doi.org/10.1385/1-59259-192-2:365openalex-snapshot
Primer3 on the WWW for General Users and for Biologist Programmers
inferredcites →https://doi.org/10.1890/0012-9615(1999)069[0219:tassok]2.0.co;2openalex-snapshot
TEMPORAL AND SPATIAL SCALES OF KELP DEMOGRAPHY: THE ROLE OF OCEANOGRAPHIC CLIMATE
inferredcites →https://doi.org/10.3354/meps027277openalex-snapshot
In situ growth and chemical composition of the giant kelp, Macrocystis pyrifera: response to temporal changes in ambient nutrient availability
inferredcites →https://doi.org/10.3390/md8040988openalex-snapshot
The Halogenated Metabolism of Brown Algae (Phaeophyta), Its Biological Importance and Its Environmental Significance
inferredcites →https://doi.org/10.4319/lo.1973.18.1.0155openalex-snapshot
Production of the giant kelp, Macrocystis, estimated by in situ incorporation of 14C in polyethylene bags1
inferredcites →https://doi.org/10.4319/lo.1977.22.6.0979openalex-snapshot
Nutrients and production of giant kelp, Macrocystis pyrifera, off southern California1
inferredcites →https://doi.org/10.4319/lo.1993.38.2.0396openalex-snapshot
A dynamic model for wave‐induced light fluctuations in a kelp forest
inferredcites →https://doi.org/10.5860/choice.38-3895openalex-snapshot
Biochemistry & molecular biology of plants
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Metabolomic variability of four macroalgal species of the genus Lobophora using diverse approaches
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Marine Algae: a Source of Biomass for Biotechnological Applications
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Kelps and Environmental Changes in Kongsfjorden: Stress Perception and Responses
inferred← citeshttps://doi.org/10.1007/978-3-319-62094-7_1openalex-snapshot
Macroalgal Functional Genomics: A Missing Area
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The Peculiar Features of Non-Photochemical Fluorescence Quenching in Diatoms and Brown Algae
inferred← citeshttps://doi.org/10.1007/s00442-016-3641-2openalex-snapshot
A kelp with integrity: Macrocystis pyrifera prioritises tissue maintenance in response to nitrogen fertilisation
inferred← citeshttps://doi.org/10.1007/s10811-020-02279-xopenalex-snapshot
Transcriptome-wide identification and evaluation of optimal reference genes for RT-qPCR expression analysis of Saccharina latissima responses to biotic and abiotic stress
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A two-component nonphotochemical fluorescence quenching in eustigmatophyte algae
inferred← citeshttps://doi.org/10.1007/s12562-019-01314-2openalex-snapshot
Complementary DNA cloning and functional analysis of lycopene β-cyclase in the brown alga Undaria pinnatifida
inferred← citeshttps://doi.org/10.1016/b978-0-12-408062-1.00002-0openalex-snapshot
Seaweed Metabolomics
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Metabolomics: an emerging frontier of systems biology in marine macrophytes
inferred← citeshttps://doi.org/10.1016/j.aquabot.2020.103211openalex-snapshot
A de novo transcriptomic approach to study the influence of marine water depth in Macrocystis pyrifera alginate production
inferred← citeshttps://doi.org/10.1016/j.dib.2022.108068openalex-snapshot
Insight into the genome data of commercially important giant kelp Macrocystis pyrifera
inferred← citeshttps://doi.org/10.1016/j.hal.2017.07.001openalex-snapshot
Transcriptional response of the harmful raphidophyte Heterosigma akashiwo to nitrate and phosphate stress
inferred← citeshttps://doi.org/10.1016/j.jinorgbio.2017.09.003openalex-snapshot
Some aspects of the iodine metabolism of the giant kelp Macrocystis pyrifera (phaeophyceae)
inferred← citeshttps://doi.org/10.1016/j.phytochem.2015.07.015openalex-snapshot
Molecular and biochemical characterization of mannitol-1-phosphate dehydrogenase from the model brown alga Ectocarpus sp.
inferred← citeshttps://doi.org/10.1016/j.rser.2021.110747openalex-snapshot
Effects of depth-cycling on nutrient uptake and biomass production in the giant kelp Macrocystis pyrifera
inferred← citeshttps://doi.org/10.1038/s41437-026-00855-4openalex-snapshot
Insights from farming Macrocystis pyrifera offshore: phenotypic analysis, genome-wide association studies, genomic selection
inferred← citeshttps://doi.org/10.1038/s41598-021-82094-7openalex-snapshot
Effect of environmental history on the habitat-forming kelp Macrocystis pyrifera responses to ocean acidification and warming: a physiological and molecular approach
inferred← citeshttps://doi.org/10.1039/c5mt00238aopenalex-snapshot
Boron uptake, localization, and speciation in marine brown algae
inferred← citeshttps://doi.org/10.1039/c8mt00327kopenalex-snapshot
Key aspects of the iodine metabolism in brown algae: a brief critical review
inferred← citeshttps://doi.org/10.1042/bst20170304openalex-snapshot
The evolution of the photoprotective antenna proteins in oxygenic photosynthetic eukaryotes
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Exploring Core Response Mechanisms to Multiple Environmental Stressors Via A Genome‐Wide Study in the Brown Alga Saccharina japonica (Laminariales, Phaeophyceae)
inferred← citeshttps://doi.org/10.1111/jpy.13213openalex-snapshot
A mesocosm study on bacteria‐kelp interactions: Importance of nitrogen availability and kelp genetics
inferred← citeshttps://doi.org/10.1111/jpy.70137openalex-snapshot
Differential transcriptomic and circadian regulation across giant kelp blades based on relative tissue age
inferred← citeshttps://doi.org/10.1111/nph.20215openalex-snapshot
Marine macrophytes in a changing world: mechanisms underpinning responses and resilience to environmental stress – an introduction to a Virtual Issue
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Infection of the brown alga E ctocarpus siliculosus by the oomycete E urychasma dicksonii induces oxidative stress and halogen metabolism
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A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera)
inferred← citeshttps://doi.org/10.1186/s12870-019-2124-0openalex-snapshot
Is geographical variation driving the transcriptomic responses to multiple stressors in the kelp Saccharina latissima?
inferred← citeshttps://doi.org/10.15381/rpb.v27i1.17579openalex-snapshot
A peep into the transcriptome studies of the industrially important brown algae with special focus on Macrocystis genus
inferred← citeshttps://doi.org/10.3389/fgene.2020.590065openalex-snapshot
First Draft Genome Assembly of the Seaweed Sargassum fusiforme
inferred← citeshttps://doi.org/10.3389/fmars.2020.00110openalex-snapshot
Cultivar Development of Kelps for Commercial Cultivation—Past Lessons and Future Prospects
inferred← citeshttps://doi.org/10.3389/fmars.2021.636699openalex-snapshot
Transcriptomic Responses of Four Pelagophytes to Nutrient (N, P) and Light Stress
inferred← citeshttps://doi.org/10.3389/fmars.2021.774076openalex-snapshot
Sporophyte Stage Genes Exhibit Stronger Selection Than Gametophyte Stage Genes in Haplodiplontic Giant Kelp
inferred← citeshttps://doi.org/10.3389/fmicb.2014.00375openalex-snapshot
De novo assembly of Aureococcus anophagefferens transcriptomes reveals diverse responses to the low nutrient and low light conditions present during blooms
inferred← citeshttps://doi.org/10.3389/fmicb.2017.01279openalex-snapshot
Conserved Transcriptional Responses to Nutrient Stress in Bloom-Forming Algae
inferred← citeshttps://doi.org/10.3389/fmicb.2018.01914openalex-snapshot
Diverse Bacteria Utilize Alginate Within the Microbiome of the Giant Kelp Macrocystis pyrifera
inferred← citeshttps://doi.org/10.3389/fmicb.2019.00136openalex-snapshot
Transcriptional Shifts Highlight the Role of Nutrients in Harmful Brown Tide Dynamics
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Tipping Points in Seaweed Genetic Engineering: Scaling Up Opportunities in the Next Decade
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Halogens in Seaweeds: Biological and Environmental Significance
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Additional file 1 of A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera)
inferred← citeshttps://doi.org/10.6084/m9.figshare.24136229openalex-snapshot
Additional file 2 of A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera)
inferred← citeshttps://doi.org/10.6084/m9.figshare.24136232openalex-snapshot
Additional file 3 of A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera)
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Caractérisation et sources de variation du métabolome : le cas de l’algue brune Lobophora des écosystèmes coralliens de Nouvelle-Calédonie
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Deciphering the oxylipin signaling pathways during defense responses in brown macroalgae
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Multiscale Analysis of Life Cycle Gene Expression Regulation in Brown Algae
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