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The genome of Areca catechu provides insights into sex determination of monoecious plants

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi0410s05openalex-snapshot

Using Repeat Masker to Identify Repetitive Elements in Genomic Sequences

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Characterization of SpAPETALA3 and SpPISTILLATA, B class floral identity genes in Spinacia oleracea, and their relationship to sexual dimorphism

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Genetic and molecular bases of cucumber (Cucumis sativus L.) sex determination

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The homeotic gene APETALA3 of Arabidopsis thaliana encodes a MADS box and is expressed in petals and stamens

inferredcites →https://doi.org/10.1016/0168-9452(91)90273-bopenalex-snapshot

Sex determination and differentiation in Asparagus officinalis L.

inferredcites →https://doi.org/10.1016/j.cell.2007.02.005openalex-snapshot

Chromatin Modifications and Their Function

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Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

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Transcriptome Analysis of Female and Male Henosepilachna vigintioctopunctata (Coleoptera: Coccinellidae) Identifies Sex-related Genes

inferredcites →https://doi.org/10.1016/j.hpj.2021.01.003openalex-snapshot

Identification of a male-specific region (MSR) in Spinacia oleracea

inferredcites →https://doi.org/10.1016/j.molp.2017.08.007openalex-snapshot

The bHLH Transcription Factors MYC2, MYC3, and MYC4 Are Required for Jasmonate-Mediated Inhibition of Flowering in Arabidopsis

inferredcites →https://doi.org/10.1016/j.molp.2020.06.009openalex-snapshot

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

inferredcites →https://doi.org/10.1016/j.pbi.2020.01.004openalex-snapshot

Pathways to sex determination in plants: how many roads lead to Rome?

inferredcites →https://doi.org/10.1016/j.tplants.2003.09.006openalex-snapshot

And then there were many: MADS goes genomic

inferredcites →https://doi.org/10.1038/346035a0openalex-snapshot

The protein encoded by the Arabidopsis homeotic gene agamous resembles transcription factors

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The war of the whorls: genetic interactions controlling flower development

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Molecular characterization of the Arabidopsis floral homeotic gene APETALA1

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Direct control of shoot meristem activity by a cytokinin-activating enzyme

inferredcites →https://doi.org/10.1038/nature08498openalex-snapshot

A transposon-induced epigenetic change leads to sex determination in melon

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Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds

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De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)

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Fast gapped-read alignment with Bowtie 2

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Sex biased expression of hormone related genes at early stage of sex differentiation in papaya flowers

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Genus-wide sequencing supports a two-locus model for sex-determination in Phoenix

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Assembly of chromosome-scale contigs by efficiently resolving repetitive sequences with long reads

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KIRA1 and ORESARA1 terminate flower receptivity by promoting cell death in the stigma of Arabidopsis

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Two Y-chromosome-encoded genes determine sex in kiwifruit

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A single gene underlies the dynamic evolution of poplar sex determination

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The water lily genome and the early evolution of flowering plants

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Integrative genome-wide analysis reveals the role of WIP proteins in inhibition of growth and development

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Molecular basis for the specification of floral organs by APETALA3 and PISTILLATA

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RepeatModeler2 for automated genomic discovery of transposable element families

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An ancestral MADS-box gene duplication occurred before the divergence of plants and animals

inferredcites →https://doi.org/10.1093/bioinformatics/bti430openalex-snapshot

Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary

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CAFE: a computational tool for the study of gene family evolution

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Clustal W and Clustal X version 2.0

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Fast and accurate long-read alignment with Burrows–Wheeler transform

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A fast, lock-free approach for efficient parallel counting of occurrences of k -mers

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nhmmer: DNA homology search with profile HMMs

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InterProScan 5: genome-scale protein function classification

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ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

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The genome draft of coconut (Cocos nucifera)

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Glycerol-3-Phosphate Acyltransferase 3 (OsGPAT3) is required for anther development and male fertility in rice

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Specific chromatin changes mark lateral organ founder cells in the Arabidopsis inflorescence meristem

inferredcites →https://doi.org/10.1093/molbev/msab293openalex-snapshot

eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale

inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot

PAML 4: Phylogenetic Analysis by Maximum Likelihood

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MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

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Tandem repeats finder: a program to analyze DNA sequences

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Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN

inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot

MUSCLE: multiple sequence alignment with high accuracy and high throughput

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AUGUSTUS: ab initio prediction of alternative transcripts

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LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

inferredcites →https://doi.org/10.1093/nar/gkp985openalex-snapshot

The Pfam protein families database

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New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

inferredcites →https://doi.org/10.1101/gad.8.13.1548openalex-snapshot

Function and regulation of the Arabidopsis floral homeotic gene PISTILLATA.

inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

inferredcites →https://doi.org/10.1101/gr.215087.116openalex-snapshot

Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation

inferredcites →https://doi.org/10.1104/pp.109.144469openalex-snapshot

CYP704B1 Is a Long-Chain Fatty Acidω-Hydroxylase Essential for Sporopollenin Synthesis in Pollen of Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.1.8.737openalex-snapshot

Sex Determination in Monoecious and Dioecious Plants

inferredcites →https://doi.org/10.1105/tpc.106.045948openalex-snapshot

CYP703 Is an Ancient Cytochrome P450 in Land Plants Catalyzing in-Chain Hydroxylation of Lauric Acid to Provide Building Blocks for Sporopollenin Synthesis in Pollen

inferredcites →https://doi.org/10.1105/tpc.106.046391openalex-snapshot

Arabidopsis MYB26/MALE STERILE35Regulates Secondary Thickening in the Endothecium and Is Essential for Anther Dehiscence

inferredcites →https://doi.org/10.1105/tpc.108.064097openalex-snapshot

A Critical Role for the TIFY Motif in Repression of Jasmonate Signaling by a Stabilized Splice Variant of the JASMONATE ZIM-Domain Protein JAZ10 in Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.111.083089openalex-snapshot

The Jasmonate-ZIM Domain Proteins Interact with the R2R3-MYB Transcription Factors MYB21 and MYB24 to Affect Jasmonate-Regulated Stamen Development in Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.17.00787openalex-snapshot

A Y-Encoded Suppressor of Feminization Arose via Lineage-Specific Duplication of a Cytokinin Response Regulator in Kiwifruit

inferredcites →https://doi.org/10.1105/tpc.20.00300openalex-snapshot

Evolutionary Variation in MADS Box Dimerization Affects Floral Development and Protein Abundance in Maize

inferredcites →https://doi.org/10.1105/tpc.6.9.1211openalex-snapshot

Control of Arabidopsis flower and seed development by the homeotic gene APETALA2.

inferredcites →https://doi.org/10.1111/j.1365-2958.2007.05767.xopenalex-snapshot

Expression switching in the stevor and Pfmc‐2TM superfamilies in Plasmodium falciparum

inferredcites →https://doi.org/10.1111/j.1365-313x.2009.04101.xopenalex-snapshot

Functional conservation and diversification of class E floral homeotic genes in rice ( Oryza sativa )

inferredcites →https://doi.org/10.1111/jipb.12212openalex-snapshot

Rice CYP703A3, a cytochrome P450 hydroxylase, is essential for development of anther cuticle and pollen exine

inferredcites →https://doi.org/10.1111/jipb.12826openalex-snapshot

Tasselseed5 encodes a cytochrome C oxidase that functions in sex determination by affecting jasmonate catabolism in maize

inferredcites →https://doi.org/10.1111/mec.13126openalex-snapshot

Recent Y chromosome divergence despite ancient origin of dioecy in poplars ( Populus )

inferredcites →https://doi.org/10.1111/tpj.12694openalex-snapshot

DYT 1 directly regulates the expression of TDF 1 for tapetum development and pollen wall formation in A rabidopsis

inferredcites →https://doi.org/10.1126/science.1141752openalex-snapshot

FT Protein Movement Contributes to Long-Distance Signaling in Floral Induction of Arabidopsis

inferredcites →https://doi.org/10.1126/science.1164645openalex-snapshot

tasselseed1 Is a Lipoxygenase Affecting Jasmonic Acid Signaling in Sex Determination of Maize

inferredcites →https://doi.org/10.1126/science.1257225openalex-snapshot

A Y-chromosome–encoded small RNA acts as a sex determinant in persimmons

inferredcites →https://doi.org/10.1126/science.250.4983.931openalex-snapshot

Genetic Control of Flower Development by Homeotic Genes in Antirrhinum majus

inferredcites →https://doi.org/10.1126/science.aac8370openalex-snapshot

A cucurbit androecy gene reveals how unisexual flowers develop and dioecy emerges

inferredcites →https://doi.org/10.1126/science.aal3327openalex-snapshot

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

inferredcites →https://doi.org/10.1159/000084979openalex-snapshot

Repbase Update, a database of eukaryotic repetitive elements

inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot

Model-based Analysis of ChIP-Seq (MACS)

inferredcites →https://doi.org/10.1186/gb-2010-11-2-r14openalex-snapshot

Gene ontology analysis for RNA-seq: accounting for selection bias

inferredcites →https://doi.org/10.1186/s12864-020-07277-4openalex-snapshot

Comparative transcriptome analysis of male and female flowers in Spinacia oleracea L

inferredcites →https://doi.org/10.1186/s12870-014-0229-zopenalex-snapshot

A small XY chromosomal region explains sex determination in wild dioecious V. vinifera and the reversal to hermaphroditism in domesticated grapevines

inferredcites →https://doi.org/10.1186/s13059-019-1832-yopenalex-snapshot

OrthoFinder: phylogenetic orthology inference for comparative genomics

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The chromosome-level wintersweet (Chimonanthus praecox) genome provides insights into floral scent biosynthesis and flowering in winter

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How can developmental biology help feed a growing population?

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The persimmon genome reveals clues to the evolution of a lineage-specific sex determination system in plants

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Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

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De Novo Assembly of Coding Sequences of the Mangrove Palm (Nypa fruticans) Using RNA-Seq and Discovery of Whole-Genome Duplications in the Ancestor of Palms

inferredcites →https://doi.org/10.1371/journal.pone.0200104openalex-snapshot

First chloroplast genomics study of Phoenix dactylifera (var. Naghal and Khanezi): A comparative analysis

inferredcites →https://doi.org/10.2307/3869820openalex-snapshot

Control of Arabidopsis Flower and Seed Development by the Homeotic Gene APETALA2

inferredcites →https://doi.org/10.3389/fpls.2013.00487openalex-snapshot

Functional recapitulation of transitions in sexual systems by homeosis during the evolution of dioecy in Thalictrum

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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Genomic Profiling and Expression Analysis of Heat Shock Protein 70 in Areca Palm (Areca Catechu. L) Under Abiotic Stresses

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Genome-Wide Investigation of Myb Gene Family in Areca Catechu and Potential Roles of Actdf in Transgenic Arabidopsis

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Comparative transcriptome analysis reveals candidate genes related to the sex differentiation of Schisandra chinensis

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Transcriptome and targeted metabolomic integrated analysis reveals mechanisms of B vitamin accumulation in Areca catechu nut development

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Analysis of biosynthetic pathways to areca alkaloids in Areca catechu

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Molecular mechanism of the effect of PEG and UV stress on the metabolism of arecoline in Areca catechu callus

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Type 2 diabetes associated with areca nut usage: A systematic review and meta-analysis

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Integrated Transcriptomic and Metabolomic Analyses Reveal the Molecular and Metabolic Basis of Flavonoids in Areca catechu L.

inferred← citeshttps://doi.org/10.1038/s42003-025-08076-xopenalex-snapshot

Integrative multi-omics data provide insights into the biosynthesis of furanocoumarins and mechanisms regulating their accumulation in Angelica dahurica

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Improving heat tolerance in betel palm (Areca catechu) by characterisation and expression analyses of heat shock proteins under thermal stress

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Convergent evolution of sex chromosomes in two palm species, Phoenix dactylifera and Kerriodoxa elegans

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Phytohormones and candidate genes synergistically regulate fruitlet abscission in Areca catechu L.

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Additional file 1 of Comparative transcriptome analysis of dioecious floral development in Trachycarpus fortunei using Illumina and PacBio SMRT sequencing

inferred← citeshttps://doi.org/10.6084/m9.figshare.24494211openalex-snapshot

Additional file 1 of Phytohormones and candidate genes synergistically regulate fruitlet abscission in Areca catechu L.

inferred← citeshttps://doi.org/10.6084/m9.figshare.24494514openalex-snapshot

Additional file 2 of Comparative transcriptome analysis of dioecious floral development in Trachycarpus fortunei using Illumina and PacBio SMRT sequencing

inferred← citeshttps://doi.org/10.6084/m9.figshare.24494515openalex-snapshot

Additional file 2 of Phytohormones and candidate genes synergistically regulate fruitlet abscission in Areca catechu L.

inferred← citeshttps://doi.org/10.6084/m9.figshare.26635227openalex-snapshot

Additional file 3 of Phytohormones and candidate genes synergistically regulate fruitlet abscission in Areca catechu L.

inferred← citeshttps://doi.org/10.6084/m9.figshare.26727976openalex-snapshot

Additional file 1 of Genome-wide identification of heavy-metal ATPases genes in Areca catechu: investigating their functionality under heavy metal exposure

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.