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Dynamic modelling of limitations on improving leaf CO2 assimilation under fluctuating irradiance

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Leaf C3 Photosynthesis in silico: Integrated Carbon/Nitrogen Metabolism
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Non-Photochemical Fluorescence Quenching Across Scales: From Chloroplasts to Plants to Communities
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The mechanism of Rubisco activase: Insights from studies of the properties and structure of the enzyme
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The role of enzyme activation state in limiting carbon assimilation under variable light conditions
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Chloroplast movements in leaves: Influence on chlorophyll fluorescence and measurements of light-induced absorbance changes related to ?pH and zeaxanthin formation
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The relationship between the post-illumination CO2 burst and glycine metabolism in leaves of C3 and C3-C4 intermediate species of Moricandia
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A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species
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Photoinhibition of photosynthesis in intact bean leaves: role of light and temperature, and requirement for chloroplast-protein synthesis during recovery
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Elevated ΔpH restores rapidly reversible photoprotective energy dissipation in Arabidopsis chloroplasts deficient in lutein and xanthophyll cycle activity
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Modelling photosynthesis in fluctuating light with inclusion of stomatal conductance, biochemical activation and pools of key photosynthetic intermediates
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The de-epoxidase and epoxidase reactions of Mantoniella squamata (Prasinophyceae) exhibit different substrate-specific reaction kinetics compared to spinach
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Modeling dynamic understory photosynthesis of contrasting species in ambient and elevated carbon dioxide
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Stomatal versus biochemical limitations to dynamic photosynthetic performance in four tropical rainforest shrub species
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Simulation of photosynthetic plasticity in response to highly fluctuating light: an empirical model integrating dynamic photosynthetic induction and capacity
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The activity of Rubisco’s molecular chaperone, Rubisco activase, in leaf extracts
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Chloroplast movement provides photoprotection to plants by redistributing PSII damage within leaves
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Models and measurements of energy-dependent quenching
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Models describing the kinetics of ribulose biphosphate carboxylase-oxygenase
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Metabolite levels during induction in the chloroplast and extrachloroplast compartments of spinach protoplasts
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Principles of Environmental Physics
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Identification of a slowly inducible zeaxanthin-dependent component of non-photochemical quenching of chlorophyll fluorescence generated under steady-state conditions in Arabidopsis
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The role of the xanthophyll cycle and of lutein in photoprotection of photosystem II
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A mathematical model of non-photochemical quenching to study short-term light memory in plants
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Dynamic Environmental Photosynthetic Imaging Reveals Emergent Phenotypes
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Modelling the relationship between CO2 assimilation and leaf anatomical properties in tomato leaves
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The impact of temperature on blue light induced chloroplast movements in Arabidopsis thaliana
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Modelling water use efficiency in a dynamic environment: An example using Arabidopsis thaliana
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An examination of factors contributing to non-photochemical quenching of chlorophyll fluorescence in barley leaves
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A pigment-binding protein essential for regulation of photosynthetic light harvesting
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Chloroplast avoidance movement reduces photodamage in plants
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Ion antiport accelerates photosynthetic acclimation in fluctuating light environments
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A physiological role of cyclic electron transport around photosystem I in sustaining photosynthesis under fluctuating light in rice
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Metabolic and diffusional limitations of photosynthesis in fluctuating irradiance in Arabidopsis thaliana
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Implications of adenylate kinase-governed equilibrium of adenylates on contents of free magnesium in plant cells and compartments
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A Note on the Kinetics of Enzyme Action
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An improved dynamic model of photosynthesis for estimation of carbon gain in sunfleck light regimes
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A simple dynamic model of photosynthesis in oak leaves: coupling leaf conductance and photosynthetic carbon fixation by a variable intracellular CO2 pool
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Relationship Between Steady-State Gas Exchange, in vivo Ribulose Bisphosphate Carboxylase Activity and Some Carbon Reduction Cycle Intermediates in Raphanus sativus
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Rate Limitation of Non-Steady-State Photosynthesis by Ribulose-1,5-Bisphosphate Carboxylase in Spinach
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Limitation of the Rate of Ribulosebisphosphate Carboxylase Activation by Carbamylation and Ribulosebisphosphate Carboxylase Activase Activity: Development and Tests of a Mechanistic Model
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Light modulation of Rubisco in Arabidopsis requires a capacity for redox regulation of the larger Rubisco activase isoform
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PsbS-dependent enhancement of feedback de-excitation protects photosystem II from photoinhibition
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Restoration of Rapidly Reversible Photoprotective Energy Dissipation in the Absence of PsbS Protein by Enhanced ΔpH
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Regulation of Ribulose-1,5-bisphosphate Carboxylase/Oxygenase (Rubisco) Activase
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Photosynthetic induction and its diffusional, carboxylation and electron transport processes as affected by CO2partial pressure, temperature, air humidity and blue irradiance
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Modelling the role of Rubisco activase in limiting non‐steady‐state photosynthesis
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Small decreases in SBPase cause a linear decline in the apparent RuBP regeneration rate, but do not affect Rubisco carboxylation capacity
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The slow reversibility of photosystem II thermal energy dissipation on transfer from high to low light may cause large losses in carbon gain by crop canopies: a theoretical analysis
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Dynamic photosynthesis in different environmental conditions
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Elevated CO2 increases photosynthesis in fluctuating irradiance regardless of photosynthetic induction state
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Optima and Limiting Factors
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The Role of Electron Transport in Determining the Temperature Dependence of the Photosynthetic Rate in Spinach Leaves Grown at Contrasting Temperatures
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Physiological Functions of PsbS-dependent and PsbS-independent NPQ under Naturally Fluctuating Light Conditions
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The Role of Arabidopsis Rubisco Activase in Jasmonate-Induced Leaf Senescence
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Kinetic Studies on the Xanthophyll Cycle in Barley Leaves (Influence of Antenna Size and Relations to Nonphotochemical Chlorophyll Fluorescence Quenching)
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The Regulatory Properties of Rubisco Activase Differ among Species and Affect Photosynthetic Induction during Light Transitions
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In Silico Analysis of the Regulation of the Photosynthetic Electron Transport Chain in C3 Plants
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Fluctuating Light Takes Crop Photosynthesis on a Rollercoaster Ride
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A Model Describing the Regulation of Ribulose-1,5-Bisphosphate Carboxylase, Electron Transport, and Triose Phosphate Use in Response to Light Intensity and CO2 in C3 Plants
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Arabidopsis Mutants Define a Central Role for the Xanthophyll Cycle in the Regulation of Photosynthetic Energy Conversion
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A dynamic model of photosynthesis in varying light taking account of stomatal conductance, C3‐cycle intermediates, photorespiration and Rubisco activation
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Photosynthesis in flashing light in soybean leaves grown in different conditions. II. Lightfleck utilization efficiency
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Extension of a biochemical model for the generalized stoichiometry of electron transport limited C3 photosynthesis
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Fitting photosynthetic carbon dioxide response curves for C3 leaves
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The chloroplast avoidance response decreases internal conductance to CO2 diffusion in Arabidopsis thaliana leaves
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Decrease in leaf sucrose synthesis leads to increased leaf starch turnover and decreased RuBP regeneration‐limited photosynthesis but not Rubisco‐limited photosynthesis in Arabidopsis null mutants of SPSA1
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Changes in leaf optical properties associated with light‐dependent chloroplast movements
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Variable mesophyll conductance revisited: theoretical background and experimental implications
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The photoprotective protein PsbS exerts control over CO2 assimilation rate in fluctuating light in rice
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Rubisco activase is a key regulator of non‐steady‐state photosynthesis at any leaf temperature and, to a lesser extent, of steady‐state photosynthesis at high temperature
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Photosynthetic rates and partitioning of absorbed light energy in photoinhibited leaves
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Photosynthetic acclimation: State transitions and adjustment of photosystem stoichiometry – functional relationships between short‐term and long‐term light quality acclimation in plants
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e‐photosynthesis: a comprehensive dynamic mechanistic model of C3 photosynthesis: from light capture to sucrose synthesis
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Steady‐state models of photosynthesis
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Temperature response of in vivo R ubisco kinetics and mesophyll conductance in Arabidopsis thaliana: comparisons to Nicotiana tabacum
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Temperature responses of mesophyll conductance differ greatly between species
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Three‐dimensional microscale modelling of CO 2 transport and light propagation in tomato leaves enlightens photosynthesis
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Non‐invasive, whole‐plant imaging of chloroplast movement and chlorophyll fluorescence reveals photosynthetic phenotypes independent of chloroplast photorelocation defects in chloroplast division mutants
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Improving photosynthesis and crop productivity by accelerating recovery from photoprotection
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SUNDIALS
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Sunflecks and Photosynthesis in Plant Canopies

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Mathematical Model to Simulate Dynamics of Photosynthetic Light Reactions in an Oscillating Light
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The rate of photosynthetic induction across different light intensities can be approximated using the light response curve of photosynthesis
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Surfing the Hyperbola Equations of the Steady-State Farquhar–von Caemmerer–Berry C3 Leaf Photosynthesis Model: What Can a Theoretical Analysis of Their Oblique Asymptotes and Transition Points Tell Us?
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Integrating the stages of photosynthesis
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Rapid irradiance fluctuations occur in a greenhouse: Quantification and implication
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Rapid irradiance fluctuations in a greenhouse: Effects of diffuse glass on shadeflecks
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Acclimation to high light intensity increases leaf photosynthetic capacity and NPQ kinetics, but barely affects photosynthetic induction rate
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A mathematical model to simulate the dynamics of photosynthetic light reactions under harmonically oscillating light
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Photosynthetic induction of the leaves varies among pepper cultivars due to stomatal oscillation
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Substantial Reductions in Cloud Cover and Moisture Transport by Dynamic Plant Responses
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Photosynthetic acclimation of crassulacean acid metabolism orchid Phalaenopsis in response to light level
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Efficient photosynthesis in dynamic light environments: a chloroplast's perspective
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NaCl affects photosynthetic and stomatal dynamics by osmotic effects and reduces photosynthetic capacity by ionic effects in tomato
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Photosynthesis and photoprotection in top leaves respond faster to irradiance fluctuations than bottom leaves in a tomato canopy
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Overexpression of the violaxanthin de-epoxidase confers faster NPQ and photosynthesis induction in rice
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Overlooked Sunfleck Properties and Potential Implications for Crop Improvement
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During photosynthetic induction, biochemical and stomatal limitations differ between Brassica crops
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Arabidopsis plants expressing only the redox‐regulated Rca‐α isoform have constrained photosynthesis and plant growth
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A System Dynamics Approach to Model Photosynthesis at Leaf Level Under Fluctuating Light
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Variation of Photosynthetic Induction in Major Horticultural Crops Is Mostly Driven by Differences in Stomatal Traits
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Non-Photochemical Quenching under Drought and Fluctuating Light
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inferred← citeshttps://doi.org/10.6084/m9.figshare.14889489openalex-snapshot
Additional file 1 of A low-cost automated growth chamber system for continuous measurements of gas exchange at canopy scale in dynamic conditions
inferred← citeshttps://doi.org/10.64898/2026.03.31.715746openalex-snapshot
Dissecting oligogenic and polygenic indirect genetic effects through the lens of neighbor genotypic identity
inferred← citeshttps://doi.org/10.7554/elife.111650openalex-snapshot
Dissecting oligogenic and polygenic indirect genetic effects through the lens of neighbor genotypic identity
inferred← citeshttps://doi.org/10.7554/elife.111650.1openalex-snapshot
Dissecting oligogenic and polygenic indirect genetic effects through the lens of neighbor genotypic identity
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