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Ammonium stress increases microautophagic activity while impairing macroautophagic flux in Arabidopsis roots

https://doi.org/10.1111/tpj.15091
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Endocytosis and autophagy: Shared machinery for degradation
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Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method
inferredcites →https://doi.org/10.1007/bf00010281openalex-snapshot
Effect of ammonium and nitrate on net photosynthesis, flower formation, growth and yield of eggplants (Solanum melongena L.)
inferredcites →https://doi.org/10.1007/s00018-011-0865-5openalex-snapshot
Microautophagy: lesser-known self-eating
inferredcites →https://doi.org/10.1016/j.bbamcr.2019.02.011openalex-snapshot
The vacuolar shapes of ageing: From function to morphology
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Plant Vacuolar Trafficking Occurs through Distinctly Regulated Pathways
inferredcites →https://doi.org/10.1016/j.cub.2014.05.005openalex-snapshot
Protein Delivery to Vacuole Requires SAND Protein-Dependent Rab GTPase Conversion for MVB-Vacuole Fusion
inferredcites →https://doi.org/10.1016/j.devcel.2017.03.015openalex-snapshot
Crosstalk between the Secretory and Autophagy Pathways Regulates Autophagosome Formation
inferredcites →https://doi.org/10.1016/j.febslet.2015.09.021openalex-snapshot
Autophagy and proteins involved in vesicular trafficking
inferredcites →https://doi.org/10.1016/j.jplph.2012.12.015openalex-snapshot
High irradiance improves ammonium tolerance in wheat plants by increasing N assimilation
inferredcites →https://doi.org/10.1016/j.pbi.2005.01.013openalex-snapshot
Autophagic recycling: lessons from yeast help define the process in plants
inferredcites →https://doi.org/10.1016/j.pbi.2007.06.006openalex-snapshot
Plant autophagy—more than a starvation response
inferredcites →https://doi.org/10.1016/j.pbi.2014.10.002openalex-snapshot
Plant vacuolar trafficking driven by RAB and SNARE proteins
inferredcites →https://doi.org/10.1016/j.pbi.2015.08.010openalex-snapshot
Endocytic and autophagic pathways crosstalk in plants
inferredcites →https://doi.org/10.1016/s1360-1385(01)02022-2openalex-snapshot
Ammonium toxicity and the real cost of transport
inferredcites →https://doi.org/10.1038/s41477-018-0328-1openalex-snapshot
A whole-cell electron tomography model of vacuole biogenesis in Arabidopsis root cells
inferredcites →https://doi.org/10.1046/j.0960-7412.2001.01189.xopenalex-snapshot
A complex and mobile structure forms a distinct subregion within the continuous vacuolar membrane in young cotyledons of Arabidopsis
inferredcites →https://doi.org/10.1073/pnas.0806168105openalex-snapshot
GDP-mannose pyrophosphorylase is a genetic determinant of ammonium sensitivity in Arabidopsis thaliana
inferredcites →https://doi.org/10.1073/pnas.1301160110openalex-snapshot
Single-particle analysis reveals shutoff control of the Arabidopsis ammonium transporter AMT1;3 by clustering and internalization
inferredcites →https://doi.org/10.1073/pnas.1421271112openalex-snapshot
Dual roles of an Arabidopsis ESCRT component FREE1 in regulating vacuolar protein transport and autophagic degradation
inferredcites →https://doi.org/10.1073/pnas.1616299114openalex-snapshot
ATG9 regulates autophagosome progression from the endoplasmic reticulum in Arabidopsis
inferredcites →https://doi.org/10.1074/jbc.m208191200openalex-snapshot
The Ccz1-Mon1 Protein Complex Is Required for the Late Step of Multiple Vacuole Delivery Pathways
inferredcites →https://doi.org/10.1074/jbc.m307905200openalex-snapshot
Determination of Four Sequential Stages during Microautophagy in Vitro
inferredcites →https://doi.org/10.1078/0176-1617-0774openalex-snapshot
NH4+ toxicity in higher plants: a critical review
inferredcites →https://doi.org/10.1083/jcb.151.3.519openalex-snapshot
Autophagic Tubes
inferredcites →https://doi.org/10.1091/mbc.e16-03-0205openalex-snapshot
The Ccz1-Mon1-Rab7 module and Rab5 control distinct steps of autophagy
inferredcites →https://doi.org/10.1093/aob/mct157openalex-snapshot
Ecological significance and complexity of N-source preference in plants
inferredcites →https://doi.org/10.1093/jxb/erl183openalex-snapshot
Vacuolar transporters and their essential role in plant metabolism
inferredcites →https://doi.org/10.1093/jxb/erq099openalex-snapshot
Reduced expression of the v-SNAREs AtVAMP71/AtVAMP7C gene family in Arabidopsis reduces drought tolerance by suppression of abscisic acid-dependent stomatal closure
inferredcites →https://doi.org/10.1093/jxb/erq299openalex-snapshot
The cytosolic glutamine synthetase GLN1;2 plays a role in the control of plant growth and ammonium homeostasis in Arabidopsis rosettes when nitrate supply is not limiting
inferredcites →https://doi.org/10.1093/jxb/eru039openalex-snapshot
Autophagy, plant senescence, and nutrient recycling
inferredcites →https://doi.org/10.1093/jxb/eru342openalex-snapshot
Exploring ammonium tolerance in a large panel of Arabidopsis thaliana natural accessions
inferredcites →https://doi.org/10.1093/jxb/erw365openalex-snapshot
Nitrogen remobilisation during leaf senescence: lessons from Arabidopsis to crops
inferredcites →https://doi.org/10.1093/jxb/erw454openalex-snapshot
Contributions of two cytosolic glutamine synthetase isozymes to ammonium assimilation in Arabidopsis roots
inferredcites →https://doi.org/10.1093/jxb/erx086openalex-snapshot
Ammonium as a signal for physiological and morphological responses in plants
inferredcites →https://doi.org/10.1093/jxb/erx395openalex-snapshot
All roads lead to the vacuole—autophagic transport as part of the endomembrane trafficking network in plants
inferredcites →https://doi.org/10.1093/jxb/ery069openalex-snapshot
Autophagy-related approaches for improving nutrient use efficiency and crop yield protection
inferredcites →https://doi.org/10.1093/pcp/pcl031openalex-snapshot
AtATG Genes, Homologs of Yeast Autophagy Genes, are Involved in Constitutive Autophagy in Arabidopsis Root Tip Cells
inferredcites →https://doi.org/10.1093/pcp/pcm085openalex-snapshot
Intra-Vacuolar Reserves of Membranes During Stomatal Closure: The Possible Role of Guard Cell Vacuoles Estimated by 3-D Reconstruction
inferredcites →https://doi.org/10.1093/pcp/pcs099openalex-snapshot
Beginning to Understand Autophagy, an Intracellular Self-Degradation System in Plants
inferredcites →https://doi.org/10.1093/pcp/pcy214openalex-snapshot
Overexpression of ATG8 in Arabidopsis Stimulates Autophagic Activity and Increases Nitrogen Remobilization Efficiency and Grain Filling
inferredcites →https://doi.org/10.1093/pcp/pcy244openalex-snapshot
Sixty Years ofPlant and Cell Physiology
inferredcites →https://doi.org/10.1104/pp.104.2.497openalex-snapshot
Expression of a Soybean (Glycine max [L.] Merr.) Seed Storage Protein Gene in Transgenic Arabidopsis thaliana and Its Response to Nutritional Stress and to Abscisic Acid Mutations
inferredcites →https://doi.org/10.1104/pp.105.060673openalex-snapshot
Autophagic Nutrient Recycling in Arabidopsis Directed by the ATG8 and ATG12 Conjugation Pathways
inferredcites →https://doi.org/10.1104/pp.113.225961openalex-snapshot
Rapid Ammonia Gas Transport Accounts for Futile Transmembrane Cycling under NH3/NH4 + Toxicity in Plant Roots
inferredcites →https://doi.org/10.1104/pp.15.00953openalex-snapshot
EXPO and Autophagosomes are Distinct Organelles in Plants
inferredcites →https://doi.org/10.1104/pp.16.01195openalex-snapshot
Cytosolic Glutamine Synthetase Gln1;2 Is the Main Isozyme Contributing to GS1 Activity and Can Be Up-Regulated to Relieve Ammonium Toxicity
inferredcites →https://doi.org/10.1104/pp.18.00444openalex-snapshot
Selective Elimination of Membrane-Damaged Chloroplasts via Microautophagy
inferredcites →https://doi.org/10.1105/tpc.104.025395openalex-snapshot
Processing of ATG8s, Ubiquitin-Like Proteins, and Their Deconjugation by ATG4s Are Essential for Plant Autophagy
inferredcites →https://doi.org/10.1105/tpc.113.113399openalex-snapshot
The Deubiquitinating Enzyme AMSH1 and the ESCRT-III Subunit VPS2.1 Are Required for Autophagic Degradation inArabidopsis
inferredcites →https://doi.org/10.1105/tpc.113.118307openalex-snapshot
A BAR-Domain Protein SH3P2, Which Binds to Phosphatidylinositol 3-Phosphate and ATG8, Regulates Autophagosome Formation in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.113.120014openalex-snapshot
AUTOPHAGY-RELATED11 Plays a Critical Role in General Autophagy- and Senescence-Induced Mitophagy in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.114.123141openalex-snapshot
Activation of the Rab7 GTPase by the MON1-CCZ1 Complex Is Essential for PVC-to-Vacuole Trafficking and Plant Growth in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.114.127571openalex-snapshot
Dynamics of Vacuoles and H+-Pyrophosphatase Visualized by Monomeric Green Fluorescent Protein inArabidopsis: Artifactual Bulbs and Native Intravacuolar Spherical Structures
inferredcites →https://doi.org/10.1105/tpc.114.135939openalex-snapshot
The Endosomal Protein CHARGED MULTIVESICULAR BODY PROTEIN1 Regulates the Autophagic Turnover of Plastids in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.15.00158openalex-snapshot
Autophagic Recycling Plays a Central Role in Maize Nitrogen Remobilization
inferredcites →https://doi.org/10.1105/tpc.15.00589openalex-snapshot
Anthocyanin Vacuolar Inclusions Form by a Microautophagy Mechanism
inferredcites →https://doi.org/10.1105/tpc.19.00170openalex-snapshot
Dual Role for Autophagy in Lipid Metabolism in Arabidopsis
inferredcites →https://doi.org/10.1111/febs.13712openalex-snapshot
To deliver or to degrade – an interplay of the ubiquitin–proteasome system, autophagy and vesicular transport in plants
inferredcites →https://doi.org/10.1111/j.0022-2720.2004.01348.xopenalex-snapshot
FM‐dyes as experimental probes for dissecting vesicle trafficking in living plant cells
inferredcites →https://doi.org/10.1111/j.1365-3040.2010.02162.xopenalex-snapshot
Root growth inhibition by NH4+ in Arabidopsis is mediated by the root tip and is linked to NH4+ efflux and GMPase activity
inferredcites →https://doi.org/10.1111/j.1365-313x.2009.03851.xopenalex-snapshot
Rapid, combinatorial analysis of membrane compartments in intact plants with a multicolor marker set
inferredcites →https://doi.org/10.1111/j.1365-313x.2010.04166.xopenalex-snapshot
ATG8 lipidation and ATG8-mediated autophagy in Arabidopsis require ATG12 expressed from the differentially controlled ATG12A AND ATG12B loci
inferredcites →https://doi.org/10.1111/j.1365-313x.2010.04315.xopenalex-snapshot
The Rab GTPase RabG3b functions in autophagy and contributes to tracheary element differentiation in Arabidopsis
inferredcites →https://doi.org/10.1111/j.1365-313x.2011.04665.xopenalex-snapshot
The occurrence of ‘bulbs’, a complex configuration of the vacuolar membrane, is affected by mutations of vacuolar SNARE and phospholipase in Arabidopsis
inferredcites →https://doi.org/10.1111/j.1469-8137.2012.04084.xopenalex-snapshot
Autophagy machinery controls nitrogen remobilization at the whole‐plant level under both limiting and ample nitrate conditions in Arabidopsis
inferredcites →https://doi.org/10.1111/jipb.12304openalex-snapshot
Simplification of vacuole structure during plant cell death triggered by culture filtrates of Erwinia carotovora
inferredcites →https://doi.org/10.1111/nph.12307openalex-snapshot
Physiological and metabolic consequences of autophagy deficiency for the management of nitrogen and protein resources in Arabidopsis leaves depending on nitrate availability
inferredcites →https://doi.org/10.1111/tpj.14794openalex-snapshot
Concurrent activation of OsAMT1;2 and OsGOGAT1 in rice leads to enhanced nitrogen use efficiency under nitrogen limitation
inferredcites →https://doi.org/10.1111/tra.12101openalex-snapshot
Arabidopsis Exocyst Subcomplex Containing Subunit EXO70B1 Is Involved in Autophagy‐Related Transport to the Vacuole
inferredcites →https://doi.org/10.1146/annurev-cellbio-092910-154005openalex-snapshot
The Role of Atg Proteins in Autophagosome Formation
inferredcites →https://doi.org/10.1146/annurev-phyto-072910-095333openalex-snapshot
What Can Plant Autophagy Do for an Innate Immune Response?
inferredcites →https://doi.org/10.1198/10857110260141193openalex-snapshot
A multiple-comparisons method based on the distribution of the root node distance of a binary tree
inferredcites →https://doi.org/10.1371/journal.pone.0061031openalex-snapshot
Ammonium Inhibits Primary Root Growth by Reducing the Length of Meristem and Elongation Zone and Decreasing Elemental Expansion Rate in the Root Apex in Arabidopsis thaliana
inferredcites →https://doi.org/10.1371/journal.pone.0120557openalex-snapshot
Silicon-Mediated Resistance in a Susceptible Rice Variety to the Rice Leaf Folder, Cnaphalocrocis medinalis Guenée (Lepidoptera: Pyralidae)
inferredcites →https://doi.org/10.1371/journal.pone.0125621openalex-snapshot
REGULATOR OF BULB BIOGENESIS1 (RBB1) Is Involved in Vacuole Bulb Formation in Arabidopsis
inferredcites →https://doi.org/10.3389/fpls.2014.00476openalex-snapshot
Plant vacuole morphology and vacuolar trafficking
inferredcites →https://doi.org/10.3389/fpls.2017.01344openalex-snapshot
Altered Cell Wall Plasticity Can Restrict Plant Growth under Ammonium Nutrition
inferredcites →https://doi.org/10.3389/fpls.2017.01353openalex-snapshot
Extra-Cellular But Extra-Ordinarily Important for Cells: Apoplastic Reactive Oxygen Species Metabolism
inferredcites →https://doi.org/10.3389/fpls.2019.01604openalex-snapshot
Sucrose Starvation Induces Microautophagy in Plant Root Cells
inferredcites →https://doi.org/10.3390/ijms19061548openalex-snapshot
Fluorescent Proteins for Investigating Biological Events in Acidic Environments
inferredcites →https://doi.org/10.3390/plants8090327openalex-snapshot
A Review of Plant Vacuoles: Formation, Located Proteins, and Functions
inferredcites →https://doi.org/10.4161/15592324.2014.991596openalex-snapshot
Mild ammonium stress increases chlorophyll content inArabidopsis thaliana
inferredcites →https://doi.org/10.4161/auto.2092openalex-snapshot
Autophagy in Development and Stress Responses of Plants
inferredcites →https://doi.org/10.4161/auto.26275openalex-snapshot
Ultrastructure of autophagy in plant cells
inferredcites →https://doi.org/10.4161/auto.4441openalex-snapshot
Autophagy and Vacuole Homeostasis: A Case for Self-Degradation?
inferredcites →https://doi.org/10.7554/elife.31145openalex-snapshot
Molecular mechanism to target the endosomal Mon1-Ccz1 GEF complex to the pre-autophagosomal structure

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4753300openalex-extracted
Redox Regulation of Autophagy in Arabidopsis: Reactive Oxygen Species Differential Effects
inferred← citeshttps://doi.org/10.1002/1873-3468.14349openalex-snapshot
Autophagy in plant viral infection
inferred← citeshttps://doi.org/10.1007/978-3-031-26673-7_13openalex-snapshot
Structural Role of Silicon-Mediated Cell Wall Stability for Ammonium Toxicity Alleviation
inferred← citeshttps://doi.org/10.1007/s00018-022-04281-7openalex-snapshot
Interaction of ToLCNDV TrAP with SlATG8f marks it susceptible to degradation by autophagy
inferred← citeshttps://doi.org/10.1016/j.pbi.2026.102964openalex-snapshot
The crosstalk of autophagy and metabolism in plants
inferred← citeshttps://doi.org/10.1016/j.plaphy.2024.108700openalex-snapshot
A synchronized symphony: Intersecting roles of ubiquitin proteasome system and autophagy in cellular degradation
inferred← citeshttps://doi.org/10.1016/j.plaphy.2025.109800openalex-snapshot
Redox regulation of autophagy in Arabidopsis: The different ROS effects
inferred← citeshttps://doi.org/10.1016/j.plaphy.2026.111661openalex-snapshot
Autophagy contributes to auxin-driven developmental plasticity in response to changes in carbon and nitrogen availability in Physcomitrium patens
inferred← citeshttps://doi.org/10.1080/15548627.2025.2593138openalex-snapshot
SH3P2-mediated autophagosomal targeting of the CCZ1-MON1-RABG3e module regulates autophagosome-vacuole fusion in Arabidopsis
inferred← citeshttps://doi.org/10.1080/15592324.2021.1924977openalex-snapshot
A proposed role for endomembrane trafficking processes in regulating tonoplast content and vacuole dynamics under ammonium stress conditions in Arabidopsis root cells
inferred← citeshttps://doi.org/10.1093/jxb/erad459openalex-snapshot
New insights into plant autophagy: molecular mechanisms and roles in development and stress responses
inferred← citeshttps://doi.org/10.1111/tpj.15991openalex-snapshot
Impaired cell growth under ammonium stress explained by modeling the energy cost of vacuole expansion in tomato leaves
inferred← citeshttps://doi.org/10.1111/tpj.70359openalex-snapshot
V‐ ATPases and amino acid catabolism are strongly disturbed in the roots of autophagy mutants in Arabidopsis, impacting water use efficiency and tricarboxylic acid metabolism
inferred← citeshttps://doi.org/10.21769/bioprotoc.5466openalex-snapshot
Detection of Plant RNA–Protein Interactions Using GFP-tag for Immunoprecipitation
inferred← citeshttps://doi.org/10.3389/fpls.2022.1052358openalex-snapshot
Autophagy modulates growth and development in the moss Physcomitrium patens
inferred← citeshttps://doi.org/10.3389/fpls.2022.1088211openalex-snapshot
Intracellular phosphate recycling systems for survival during phosphate starvation in plants
inferred← citeshttps://doi.org/10.3389/fpls.2023.1240973openalex-snapshot
RAB7 GTPases as coordinators of plant endomembrane traffic
inferred← citeshttps://doi.org/10.3390/plants13010086openalex-snapshot
Enhanced Stomatal Conductance Supports Photosynthesis in Wheat to Improved NH4+ Tolerance
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