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Dissecting the molecular mechanism of russeting in sand pear (Pyrus pyrifolia Nakai) by metabolomics, transcriptomics, and proteomics

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Suberin: A Biopolyester of Plants' Skin

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Influence of cuticular waxes on penetration of pear leaf cuticle by 1‐naphthaleneacetic acid

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Purification and characterization of hydroxycinnamoyl-coenzyme A: ?-hydroxypalmitic acid O-hydroxycinnamoyltransferase from tobacco (Nicotiana tabacum L.) cell-suspension cultures

inferredcites →https://doi.org/10.1007/bf01405922openalex-snapshot

A berberine-aniline blue fluorescent staining procedure for suberin, lignin, and callose in plant tissue

inferredcites →https://doi.org/10.1007/s00299-014-1727-zopenalex-snapshot

Suberin: biosynthesis, regulation, and polymer assembly of a protective extracellular barrier

inferredcites →https://doi.org/10.1007/s10681-013-1032-xopenalex-snapshot

Differentially expressed genes related to the formation of russet fruit skin in a mutant of ‘Dangshansuli’ pear (Pyrus bretchnederi Rehd.) determined by suppression subtractive hybridization

inferredcites →https://doi.org/10.1007/s11103-013-0113-5openalex-snapshot

Coexpression patterns indicate that GPI-anchored non-specific lipid transfer proteins are involved in accumulation of cuticular wax, suberin and sporopollenin

inferredcites →https://doi.org/10.1007/s11103-014-0173-1openalex-snapshot

Pigmentation in sand pear (Pyrus pyrifolia) fruit: biochemical characterization, gene discovery and expression analysis with exocarp pigmentation mutant

inferredcites →https://doi.org/10.1007/s11103-015-0303-4openalex-snapshot

Apple russeting as seen through the RNA-seq lens: strong alterations in the exocarp cell wall

inferredcites →https://doi.org/10.1016/j.cell.2015.12.021openalex-snapshot

Adaptation of Root Function by Nutrient-Induced Plasticity of Endodermal Differentiation

inferredcites →https://doi.org/10.1016/j.envexpbot.2014.10.002openalex-snapshot

Root-specific expression of wheat expansin gene TaEXPB23 enhances root growth and water stress tolerance in tobacco

inferredcites →https://doi.org/10.1016/j.jprot.2015.09.006openalex-snapshot

Quantitative proteomics reveals the central changes of wheat in response to powdery mildew

inferredcites →https://doi.org/10.1016/j.pbi.2007.04.004openalex-snapshot

Suberin — a biopolyester forming apoplastic plant interfaces

inferredcites →https://doi.org/10.1016/j.postharvbio.2006.01.019openalex-snapshot

Preferences in pear appearance and response to novelty among Australian and New Zealand consumers

inferredcites →https://doi.org/10.1016/j.scienta.2005.07.009openalex-snapshot

Identification of RAPD marker linked to fruit skin color in Japanese pear (Pyrus pyrifolia Nakai)

inferredcites →https://doi.org/10.1016/j.scienta.2016.07.019openalex-snapshot

A review for the molecular research of russet/semi-russet of sand pear exocarp and their genetic characters

inferredcites →https://doi.org/10.1016/j.scienta.2019.04.086openalex-snapshot

Proteomic analysis of the key mechanism of exocarp russet pigmentation of semi-russet pear under rainwater condition

inferredcites →https://doi.org/10.1016/j.tplants.2008.03.003openalex-snapshot

Building lipid barriers: biosynthesis of cutin and suberin

inferredcites →https://doi.org/10.1021/acs.jafc.5b00013openalex-snapshot

A Focus on the Biosynthesis and Composition of Cuticle in Fruits

inferredcites →https://doi.org/10.1021/bm401620dopenalex-snapshot

Deconstructing a Plant Macromolecular Assembly: Chemical Architecture, Molecular Flexibility, And Mechanical Performance of Natural and Engineered Potato Suberins

inferredcites →https://doi.org/10.1038/75556openalex-snapshot

Gene Ontology: tool for the unification of biology

inferredcites →https://doi.org/10.1038/s41438-019-0172-0openalex-snapshot

Integrated physiologic, proteomic, and metabolomic analyses of Malus halliana adaptation to saline–alkali stress

inferredcites →https://doi.org/10.1038/s41438-020-0242-3openalex-snapshot

Proteome and transcriptome profile analysis reveals regulatory and stress-responsive networks in the russet fruit skin of sand pear

inferredcites →https://doi.org/10.1073/pnas.0706984104openalex-snapshot

Identification of acyltransferases required for cutin biosynthesis and production of cutin with suberin-like monomers

inferredcites →https://doi.org/10.1080/09687680801914508openalex-snapshot

Advances in functional regulation mechanisms of plant aquaporins: Their diversity, gene expression, localization, structure and roles in plant soil-water relations (Review)

inferredcites →https://doi.org/10.1093/bioinformatics/btq054openalex-snapshot

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot

HTSeq—a Python framework to work with high-throughput sequencing data

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Combining Gene Expression and Molecular Marker Information for Mapping Complex Trait Genes: A Simulation Study

inferredcites →https://doi.org/10.1093/jexbot/52.363.2023openalex-snapshot

Protecting against water loss: analysis of the barrier properties of plant cuticles

inferredcites →https://doi.org/10.1093/jxb/err135openalex-snapshot

Root apoplastic barriers block Na+ transport to shoots in rice (Oryza sativa L.)

inferredcites →https://doi.org/10.1093/jxb/eru432openalex-snapshot

Metabolic profiles of soybean roots during early stages of Fusarium tucumaniae infection

inferredcites →https://doi.org/10.1093/jxb/erv366openalex-snapshot

Genome investigation suggestsMdSHN3, an APETALA2-domain transcription factor gene, to be a positive regulator of apple fruit cuticle formation and an inhibitor of russet development

inferredcites →https://doi.org/10.1093/jxb/erv524openalex-snapshot

Two MYB transcription factors regulate flavonoid biosynthesis in pear fruit (Pyrus bretschneideriRehd.)

inferredcites →https://doi.org/10.1093/jxb/erx348openalex-snapshot

Assimilation of ‘omics’ strategies to study the cuticle layer and suberin lamellae in plants

inferredcites →https://doi.org/10.1093/jxb/erz430openalex-snapshot

ABF2 and MYB transcription factors regulate feruloyl transferase FHT involved in ABA-mediated wound suberization of kiwifruit

inferredcites →https://doi.org/10.1093/nar/27.1.29openalex-snapshot

KEGG: Kyoto Encyclopedia of Genes and Genomes

inferredcites →https://doi.org/10.1104/pp.104.055715openalex-snapshot

Differential Expression and Evolution of the Arabidopsis CYP86A Subfamily

inferredcites →https://doi.org/10.1104/pp.112.196717openalex-snapshot

Environmental Stresses of Field Growth Allow Cinnamyl Alcohol Dehydrogenase-Deficient Nicotiana attenuata Plants to Compensate for their Structural Deficiencies

inferredcites →https://doi.org/10.1104/pp.112.201996openalex-snapshot

A Land-Plant-Specific Glycerol-3-Phosphate Acyltransferase Family in Arabidopsis: Substrate Specificity, sn -2 Preference, and Evolution

inferredcites →https://doi.org/10.1111/j.1753-4887.1981.tb06752.xopenalex-snapshot

Proceedings of the National Academy of Sciences of the United States of America

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Gb CYP 86A1‐1 from Gossypium barbadense positively regulates defence against Verticillium dahliae by cell wall modification and activation of immune pathways

inferredcites →https://doi.org/10.1111/pce.12831openalex-snapshot

The functional role of xylem parenchyma cells and aquaporins during recovery from severe water stress

inferredcites →https://doi.org/10.1139/b02-017openalex-snapshot

Demystifying suberin

inferredcites →https://doi.org/10.1158/1078-0432.ccr-17-0474openalex-snapshot

Targeted Proteomics Identifies Proteomic Signatures in Liquid Biopsies of the Endometrium to Diagnose Endometrial Cancer and Assist in the Prediction of the Optimal Surgical Treatment

inferredcites →https://doi.org/10.1186/s12870-015-0582-6openalex-snapshot

Proteomics analysis reveals differentially activated pathways that operate in peanut gynophores at different developmental stages

inferredcites →https://doi.org/10.1371/journal.pone.0083675openalex-snapshot

Exploring Candidate Genes for Pericarp Russet Pigmentation of Sand Pear (Pyrus pyrifolia) via RNA-Seq Data in Two Genotypes Contrasting for Pericarp Color

inferredcites →https://doi.org/10.1590/1678-4685-gmb-2017-0109openalex-snapshot

Characterization and expression of the ABC family (G group) in ‘Dangshansuli’ pear (Pyrus bretschneideri Rehd.) and its russet mutant

inferredcites →https://doi.org/10.3390/plants8020039openalex-snapshot

PbCOP1.1 Contributes to the Negative Regulation of Anthocyanin Biosynthesis in Pear

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4753298openalex-extracted

Ppyltp36 and Ppyltp39 Inhibit the Occurrence of Pear Fruit Russeting Via Regulating the Cuticular Wax Biosynthesis

inferred← citeshttps://doi.org/10.1007/s00299-024-03321-9openalex-snapshot

The MYB transcription factor PpMYB5 regulates Pp4CL1/Pp4CL2 expression to promote lignin biosynthesis of fruit russeting in the flat nectarine

inferred← citeshttps://doi.org/10.1007/s00344-023-11168-9openalex-snapshot

Alterations in Surface Structure and Chemical Composition of the Cuticle in Response to the ‘Star Russeting’ Skin Disorder in Persimmon (Diospyros kaki)

inferred← citeshttps://doi.org/10.1007/s00425-023-04102-6openalex-snapshot

PpyMYB144 transcriptionally regulates pear fruit skin russeting by activating the cytochrome P450 gene PpyCYP86B1

inferred← citeshttps://doi.org/10.1007/s11103-023-01371-3openalex-snapshot

Comprehensive analysis of KCS gene family in pear reveals the involvement of PbrKCSs in cuticular wax and suberin synthesis and pear fruit skin formation

inferred← citeshttps://doi.org/10.1007/s11738-025-03782-9openalex-snapshot

PbSQE3 and PbSQE6 regulates the formation of triterpenoid compounds in the russet mutant of ‘Dangshansuli variety’ pear

inferred← citeshttps://doi.org/10.1007/s12298-023-01329-1openalex-snapshot

Two monolignoid biosynthetic genes 4-coumarate:coenzyme A ligase (4CL) and p-coumaric acid 3-hdroxylase (C3H) involved in lignin accumulation in pear fruits

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PpyLTP36 and PpyLTP39 are involved in the transmembrane transport of cuticular wax and are associated with the occurrence of pear fruit russeting

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A seasonal dynamics of free fatty acid content and gene expression provides new insights into the fatty acid metabolism in Acer truncatum seeds

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Application of quantitative proteomics to investigate fruit ripening and eating quality

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The polyphenolic suberized peridermal skin of the Sikkim cucumber acts as an effective chemical barrier against Botrytis cinerea infection

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Sodium alginate coating improves refrigerated sweet corn quality: Hormonal and metabolic responses

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Prohexadione-calcium inhibits fruit russeting formation by increasing the wax accumulation in 'Hongdan' apple

inferred← citeshttps://doi.org/10.1016/j.scienta.2023.112116openalex-snapshot

Multi-omics analysis of green- and russet skin pear cultivars identify key regulators of skin russeting

inferred← citeshttps://doi.org/10.1016/j.scienta.2024.113251openalex-snapshot

Transcriptome and metabolome integrated analysis reveals the wax biosynthesis mechanism of Allium cepa L.

inferred← citeshttps://doi.org/10.1016/j.scienta.2024.113906openalex-snapshot

Deciphering the genetic and molecular regulatory mechanisms of the environmental-induced fruit semi-russeting in pear: A review

inferred← citeshttps://doi.org/10.1039/d4ay01368aopenalex-snapshot

Application of a metabolomics method in the study of pear fruit storage

inferred← citeshttps://doi.org/10.1093/hr/uhac092openalex-snapshot

The metabolic and proteomic repertoires of periderm tissue in skin of the reticulated Sikkim cucumber fruit

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Microscopic and metabolic investigations disclose the factors that lead to skin cracking in chili-type pepper fruit varieties

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Exocarp-specific expression of a fungal cutinase in tomato fruits alters cuticle ultrastructure, chemistry and nanomechanics

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Natural variants of CsSHN1 orchestrate a temporal regulatory cascade driving fruit skin netting in cucumber

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Evaluation and Optimization Algorithm of Weather Modification Operation Effect

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GhMYB106_D13 coordinates cuticle biosynthesis to build the dual shields for anther protection in upland cotton

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Novel Targets for Fruit Conservation Strategies Revealed by Omics Studies: A Systematic Review and Meta‐Analysis

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Integrated analysis of metabolome, transcriptome, and bioclimatic factors of Acer truncatum seeds reveals key candidate genes related to unsaturated fatty acid biosynthesis, and potentially optimal production area

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Influence of the content of biologically active phenolic compounds in the fruits of Malus Mill. on their quality indicators

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Transcriptome and metabolome analyses reveal phenotype formation differences between russet and non-russet apples

inferred← citeshttps://doi.org/10.3389/fpls.2022.834109openalex-snapshot

Advances in Understanding the Causes, Molecular Mechanism, and Perspectives of Russeting on Tree Fruit

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Transcriptome and Physiological Analysis Highlight Lignin Metabolism of the Fruit Dots Disordering during Postharvest Cold Storage in ‘Danxiahong’ Pear

inferred← citeshttps://doi.org/10.48130/mpb-2023-0016openalex-snapshot

Advances in molecular biological research of Angelica sinensis

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Integration analysis of the metabolome, transcriptome, and microRNAome provides insights into the metabolic regulatory networks of seed germination in pear

inferred← citeshttps://doi.org/10.6084/m9.figshare.26707328openalex-snapshot

Additional file 1 of Integrated analysis of metabolome, transcriptome, and bioclimatic factors of Acer truncatum seeds reveals key candidate genes related to unsaturated fatty acid biosynthesis, and potentially optimal production area

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