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mRNA N6 ‐methyladenosine is critical for cold tolerance in Arabidopsis

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ajb2.1442openalex-snapshot

Cold tolerance in the genus Arabidopsis

inferredcites →https://doi.org/10.1002/pld3.239openalex-snapshot

N6‐methyladenosine and RNA secondary structure affect transcript stability and protein abundance during systemic salt stress in Arabidopsis

inferredcites →https://doi.org/10.1006/meth.2001.1262openalex-snapshot

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

inferredcites →https://doi.org/10.1007/978-1-4939-7136-7_9openalex-snapshot

Isolation of Polysomal RNA for Analyzing Stress-Responsive Genes Regulated at the Translational Level in Plants

inferredcites →https://doi.org/10.1007/978-1-60761-702-0_3openalex-snapshot

Gene Regulation During Cold Stress Acclimation in Plants

inferredcites →https://doi.org/10.1016/j.cell.2012.05.003openalex-snapshot

Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons

inferredcites →https://doi.org/10.1016/j.cell.2015.05.014openalex-snapshot

N6-methyladenosine Modulates Messenger RNA Translation Efficiency

inferredcites →https://doi.org/10.1016/j.celrep.2018.10.020openalex-snapshot

N6-Methyladenosine Inhibits Local Ribonucleolytic Cleavage to Stabilize mRNAs in Arabidopsis

inferredcites →https://doi.org/10.1016/j.celrep.2018.10.068openalex-snapshot

Circadian Clock Regulation of Hepatic Lipid Metabolism by Modulation of m6A mRNA Methylation

inferredcites →https://doi.org/10.1016/j.devcel.2016.06.008openalex-snapshot

N6-Methyladenosine RNA Modification Regulates Shoot Stem Cell Fate in Arabidopsis

inferredcites →https://doi.org/10.1016/j.molcel.2011.08.017openalex-snapshot

Mechanisms and Consequences of Alternative Polyadenylation

inferredcites →https://doi.org/10.1016/j.molcel.2019.02.034openalex-snapshot

Endoribonucleolytic Cleavage of m6A-Containing RNAs by RNase P/MRP Complex

inferredcites →https://doi.org/10.1016/j.molp.2017.01.004openalex-snapshot

BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis

inferredcites →https://doi.org/10.1016/j.molp.2021.01.013openalex-snapshot

CPSF30-L-mediated recognition of mRNA m6A modification controls alternative polyadenylation of nitrate signaling-related gene transcripts in Arabidopsis

inferredcites →https://doi.org/10.1016/j.molp.2021.01.014openalex-snapshot

Arabidopsis N6-methyladenosine reader CPSF30-L recognizes FUE signals to control polyadenylation site choice in liquid-like nuclear bodies

inferredcites →https://doi.org/10.1016/j.pbi.2015.05.015openalex-snapshot

The Arabidopsis epitranscriptome

inferredcites →https://doi.org/10.1016/j.pbi.2018.05.010openalex-snapshot

The nucleotides they are a-changin’: function of RNA binding proteins in post-transcriptional messenger RNA editing and modification in Arabidopsis

inferredcites →https://doi.org/10.1016/j.semcdb.2010.04.001openalex-snapshot

MicroRNAs with macro-effects on plant stress responses

inferredcites →https://doi.org/10.1016/j.stem.2014.09.019openalex-snapshot

m6A RNA Modification Controls Cell Fate Transition in Mammalian Embryonic Stem Cells

inferredcites →https://doi.org/10.1016/j.tplants.2018.04.002openalex-snapshot

Molecular Regulation of CBF Signaling in Cold Acclimation

inferredcites →https://doi.org/10.1038/36285openalex-snapshot

Mutation of the mouse klotho gene leads to a syndrome resembling ageing.

inferredcites →https://doi.org/10.1038/nature11112openalex-snapshot

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

inferredcites →https://doi.org/10.1038/nature12730openalex-snapshot

N6-methyladenosine-dependent regulation of messenger RNA stability

inferredcites →https://doi.org/10.1038/nature15377openalex-snapshot

Dynamic m6A mRNA methylation directs translational control of heat shock response

inferredcites →https://doi.org/10.1038/ncomms6630openalex-snapshot

Unique features of the m6A methylome in Arabidopsis thaliana

inferredcites →https://doi.org/10.1038/nprot.2008.211openalex-snapshot

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

inferredcites →https://doi.org/10.1038/nsmb.3162openalex-snapshot

N6-methyladenosine–encoded epitranscriptomics

inferredcites →https://doi.org/10.1038/s41467-019-13317-9openalex-snapshot

m6A in mRNA coding regions promotes translation via the RNA helicase-containing YTHDC2

inferredcites →https://doi.org/10.1038/s41556-018-0045-zopenalex-snapshot

Recognition of RNA N6-methyladenosine by IGF2BP proteins enhances mRNA stability and translation

inferredcites →https://doi.org/10.1046/j.1365-313x.1998.00310.xopenalex-snapshot

Low temperature regulation of theArabidopsisCBF family of AP2 transcriptional activators as an early step in cold‐inducedCORgene expression

inferredcites →https://doi.org/10.1073/pnas.0303029101openalex-snapshot

CBF2/DREB1C is a negative regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role in stress tolerance in Arabidopsis

inferredcites →https://doi.org/10.1073/pnas.0705639105openalex-snapshot

Arabidopsis CBF1 and CBF3 have a different function than CBF2 in cold acclimation and define different gene classes in the CBF regulon

inferredcites →https://doi.org/10.1073/pnas.1103741108openalex-snapshot

CIRCADIAN CLOCK-ASSOCIATED 1 and LATE ELONGATED HYPOCOTYL regulate expression of the C-REPEAT BINDING FACTOR (CBF) pathway in Arabidopsis

inferredcites →https://doi.org/10.1093/bib/bbs017openalex-snapshot

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot

STAR: ultrafast universal RNA-seq aligner

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot

HTSeq—a Python framework to work with high-throughput sequencing data

inferredcites →https://doi.org/10.1093/bioinformatics/bty110openalex-snapshot

TAPAS: tool for alternative polyadenylation site analysis

inferredcites →https://doi.org/10.1093/jxb/erab074openalex-snapshot

Transcriptome-wide analysis of epitranscriptome and translational efficiency associated with heterosis in maize

inferredcites →https://doi.org/10.1093/jxb/ery262openalex-snapshot

New insights into the plant epitranscriptome

inferredcites →https://doi.org/10.1093/nar/gkx1030openalex-snapshot

MODOMICS: a database of RNA modification pathways. 2017 update

inferredcites →https://doi.org/10.1104/pp.110.161794openalex-snapshot

Molecular Basis of Plant Cold Acclimation: Insights Gained from Studying the CBF Cold Response Pathway

inferredcites →https://doi.org/10.1104/pp.16.00533openalex-snapshot

Mutational Evidence for the Critical Role of CBF Transcription Factors in Cold Acclimation in Arabidopsis

inferredcites →https://doi.org/10.1104/pp.19.00987openalex-snapshot

Natural Variation in RNA m 6 A Methylation and Its Relationship with Translational Status

inferredcites →https://doi.org/10.1104/pp.19.01156openalex-snapshot

Occurrence and Functions of m 6 A and Other Covalent Modifications in Plant mRNA

inferredcites →https://doi.org/10.1105/tpc.003483openalex-snapshot

Arabidopsis Transcriptome Profiling Indicates That Multiple Regulatory Pathways Are Activated during Cold Acclimation in Addition to the CBF Cold Response Pathway[W]

inferredcites →https://doi.org/10.1105/tpc.108.058883openalex-snapshot

MTA Is an Arabidopsis Messenger RNA Adenosine Methylase and Interacts with a Homolog of a Sex-Specific Splicing Factor

inferredcites →https://doi.org/10.1105/tpc.13.1.61openalex-snapshot

Monitoring the Expression Pattern of 1300 Arabidopsis Genes under Drought and Cold Stresses by Using a Full-Length cDNA Microarray

inferredcites →https://doi.org/10.1105/tpc.16.00669openalex-snapshot

Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature

inferredcites →https://doi.org/10.1105/tpc.16.00912openalex-snapshot

ALKBH10B Is an RNA N 6 -Methyladenosine Demethylase Affecting Arabidopsis Floral Transition

inferredcites →https://doi.org/10.1105/tpc.17.00934openalex-snapshot

The m 6 A Reader ECT2 Controls Trichome Morphology by Affecting mRNA Stability in Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.18.00177openalex-snapshot

Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome

inferredcites →https://doi.org/10.1111/jipb.12515openalex-snapshot

The precise regulation of different COR genes by individual CBF transcription factors in Arabidopsis thaliana

inferredcites →https://doi.org/10.1111/jipb.12917openalex-snapshot

H3K36me2 is highly correlated with m6A modifications in plants

inferredcites →https://doi.org/10.1111/nph.14586openalex-snapshot

Identification of factors required for m 6 A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI

inferredcites →https://doi.org/10.1111/nph.15696openalex-snapshot

Advances and challenges in uncovering cold tolerance regulatory mechanisms in plants

inferredcites →https://doi.org/10.1111/tpj.12796openalex-snapshot

Regulation of the Arabidopsis CBF regulon by a complex low‐temperature regulatory network

inferredcites →https://doi.org/10.1111/tpj.15270openalex-snapshot

N 6 ‐Methyladenosine mRNA methylation is important for salt stress tolerance in Arabidopsis

inferredcites →https://doi.org/10.1126/science.aag1550openalex-snapshot

A transcription factor hierarchy defines an environmental stress response network

inferredcites →https://doi.org/10.1146/annurev.arplant.57.032905.105444openalex-snapshot

TRANSCRIPTIONAL REGULATORY NETWORKS IN CELLULAR RESPONSES AND TOLERANCE TO DEHYDRATION AND COLD STRESSES

inferredcites →https://doi.org/10.1186/s12864-018-5279-4openalex-snapshot

Comparative transcriptome and translatome analysis in contrasting rice genotypes reveals differential mRNA translation in salt-tolerant Pokkali under salt stress

inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

inferredcites →https://doi.org/10.1186/s13059-015-0839-2openalex-snapshot

Transcriptome-wide high-throughput deep m6A-seq reveals unique differential m6A methylation patterns between three organs in Arabidopsis thaliana

inferredcites →https://doi.org/10.1186/s13059-019-1771-7openalex-snapshot

RNA methylomes reveal the m6A-mediated regulation of DNA demethylase gene SlDML2 in tomato fruit ripening

inferredcites →https://doi.org/10.1242/dev.189134openalex-snapshot

Recurrent requirement for the m6A-ECT2/ECT3/ECT4 axis in the control of cell proliferation during plant organogenesis

inferredcites →https://doi.org/10.1371/journal.pgen.1005471openalex-snapshot

The Arabidopsis RCC1 Family Protein TCF1 Regulates Freezing Tolerance and Cold Acclimation through Modulating Lignin Biosynthesis

inferredcites →https://doi.org/10.1371/journal.pgen.1008120openalex-snapshot

The subunit of RNA N6-methyladenosine methyltransferase OsFIP regulates early degeneration of microspores in rice

inferredcites →https://doi.org/10.2147/ott.s226796openalex-snapshot

RNA m6A Methyltransferase METTL3 Promotes The Growth Of Prostate Cancer By Regulating Hedgehog Pathway

inferredcites →https://doi.org/10.3389/fpls.2012.00048openalex-snapshot

Adenosine Methylation in Arabidopsis mRNA is Associated with the 3′ End and Reduced Levels Cause Developmental Defects

inferredcites →https://doi.org/10.3389/fpls.2019.00500openalex-snapshot

Epitranscriptomic RNA Methylation in Plant Development and Abiotic Stress Responses

inferredcites →https://doi.org/10.3390/ijms21072462openalex-snapshot

MTA, an RNA m6A Methyltransferase, Enhances Drought Tolerance by Regulating the Development of Trichomes and Roots in Poplar

inferredcites →https://doi.org/10.3390/plants9050560openalex-snapshot

Physiological and Molecular Mechanism Involved in Cold Stress Tolerance in Plants

inferredcites →https://doi.org/10.4161/rna.36281openalex-snapshot

Transcriptome-wide N6-methyladenosine profiling of rice callus and leaf reveals the presence of tissue-specific competitors involved in selective mRNA modification

inferredcites →https://doi.org/10.7554/elife.47261openalex-snapshot

The Tudor SND1 protein is an m6A RNA reader essential for replication of Kaposi’s sarcoma-associated herpesvirus

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Glycine Betaine-Mediated M6a Methylation Alleviated Low Temperature Combined with Low Light Stress in Pepper (Capsicum Annuum L.)

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The m6A regulatory network in plant stress adaptation: from mechanisms to breeding potential

inferred← citeshttps://doi.org/10.3390/cells15100943openalex-snapshot

Dual Roles of m6A Modification: Orchestrating Development and Abiotic Stress Resilience in Plants

inferred← citeshttps://doi.org/10.3390/ijms241914441openalex-snapshot

AP2/EREBP Pathway Plays an Important Role in Chaling Wild Rice Tolerance to Cold Stress

inferred← citeshttps://doi.org/10.3390/ijms26083593openalex-snapshot

Genome-Wide Identification and Expression Analysis of m6A Methyltransferase Family in Przewalskia tangutica Maxim.

inferred← citeshttps://doi.org/10.3390/ncrna10010008openalex-snapshot

RNA N6-Methyladenosine Affects Copper-Induced Oxidative Stress Response in Arabidopsis thaliana

inferred← citeshttps://doi.org/10.3390/plants12142747openalex-snapshot

Genome-Wide Identification, Expression and Evolution Analysis of m6A Writers, Readers and Erasers in Aegilops_tauschii

inferred← citeshttps://doi.org/10.3390/plants14132002openalex-snapshot

Epitranscriptomic Control of Drought Tolerance in Rice: The Role of RNA Methylation

inferred← citeshttps://doi.org/10.6084/m9.figshare.26586030openalex-snapshot

Additional file 1 of m6A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis

inferred← citeshttps://doi.org/10.6084/m9.figshare.26586033openalex-snapshot

Additional file 2 of m6A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis

inferred← citeshttps://doi.org/10.6084/m9.figshare.26586036openalex-snapshot

Additional file 3 of m6A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis

inferred← citeshttps://doi.org/10.6084/m9.figshare.26586039openalex-snapshot

Additional file 4 of m6A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis

inferred← citeshttps://doi.org/10.6084/m9.figshare.26586042openalex-snapshot

Additional file 5 of m6A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis

inferred← citeshttps://doi.org/10.6084/m9.figshare.26586045openalex-snapshot

Additional file 6 of m6A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis

inferred← citeshttps://doi.org/10.6084/m9.figshare.26586048openalex-snapshot

Additional file 7 of m6A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis

inferred← citeshttps://doi.org/10.6084/m9.figshare.26586051openalex-snapshot

Additional file 8 of m6A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis

inferred← citeshttps://doi.org/10.6084/m9.figshare.26658292openalex-snapshot

Additional file 1 of Genome-wide identification, characterization, and expression analysis of m6A readers-YTH domain-containing genes in alfalfa

inferred← citeshttps://doi.org/10.6084/m9.figshare.26658295openalex-snapshot

Additional file 2 of Genome-wide identification, characterization, and expression analysis of m6A readers-YTH domain-containing genes in alfalfa

inferred← citeshttps://doi.org/10.6084/m9.figshare.26658298openalex-snapshot

Additional file 3 of Genome-wide identification, characterization, and expression analysis of m6A readers-YTH domain-containing genes in alfalfa

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