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Reticulate evolution of the tertiary relict Osmanthus
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Tree thinking for all biology: the problem with reading phylogenies as ladders of progress
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Homoploid hybridization of plants in the Hengduan mountains region
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Plastid genomes reveal evolutionary shifts in elevational range and flowering time of Osmanthus (Oleaceae)
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Evolution of Forest Cover in Portugal: From the Miocene to the Present
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Molecular phylogenetic reconstruction of Osmanthus Lour. (Oleaceae) and related genera based on three chloroplast intergenic spacers
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Phylogeny and systematics of the Lactucinae (Asteraceae) focusing on their SW Asian centre of diversity
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Development and characterization of polymorphic microsatellite loci in endangered fern Adiantum reniforme var. sinense
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Empirical assessment of the reproductive fitness components of the hybrid pine Pinus densata on the Tibetan Plateau
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Understanding Evolutionary Trees
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Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites
inferredcites →https://doi.org/10.1016/j.pld.2017.09.004openalex-snapshot
Origins and evolution of plant diversity in the Hengduan Mountains, China
inferredcites →https://doi.org/10.1016/j.ympev.2006.07.004openalex-snapshot
Incongruent plastid and nuclear DNA phylogenies reveal ancient intergeneric hybridization in Pilosella hawkweeds (Hieracium, Cichorieae, Asteraceae)
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Evidence of chloroplast capture in South American Nothofagus (subgenus Nothofagus, Nothofagaceae)
inferredcites →https://doi.org/10.1016/j.ympev.2011.01.009openalex-snapshot
Glacial survival east and west of the ‘Mekong–Salween Divide’ in the Himalaya–Hengduan Mountains region as revealed by AFLPs and cpDNA sequence variation in Sinopodophyllum hexandrum (Berberidaceae)
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Intricate patterns of phylogenetic relationships in the olive family as inferred from multi-locus plastid and nuclear DNA sequence analyses: A close-up on Chionanthus and Noronhia (Oleaceae)
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Phylogenomic conflict resulting from ancient introgression following species diversification in Stewartia s.l. (Theaceae)
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Introgression is widespread in the radiation of carnivorous Nepenthes pitcher plants
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Plastid phylogenomic analyses of Fagales reveal signatures of conflict and ancient chloroplast capture
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Oleaceous laurophyllous leaf fossils and pollen from the European Tertiary
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
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The chromosome-level quality genome provides insights into the evolution of the biosynthesis genes for aroma compounds of Osmanthus fragrans
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The Chloranthus sessilifolius genome provides insight into early diversification of angiosperms
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Massive haplotypes underlie ecotypic differentiation in sunflowers
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The colonization history of Olea europaea L. in Macaronesia based on internal transcribed spacer 1 (ITS‐1) sequences, randomly amplified polymorphic DNAs (RAPD), and intersimple sequence repeats (ISSR)
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Horizontal transfer of chloroplast genomes between plant species
inferredcites →https://doi.org/10.1073/pnas.1616063114openalex-snapshot
Uplift-driven diversification in the Hengduan Mountains, a temperate biodiversity hotspot
inferredcites →https://doi.org/10.1080/03746609609468918openalex-snapshot
Notes From The Royal Botanic Garden, Edinburgh
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PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
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Phylogenetics of Olea (Oleaceae) based on plastid and nuclear ribosomal DNA sequences: Tertiary climatic shifts and lineage differentiation times
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
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The Sequence Alignment/Map format and SAMtools
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Phybase: an R package for species tree analysis
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DendroPy: a Python library for phylogenetic computing
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The variant call format and VCFtools
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Quartet Inference from SNP Data Under the Coalescent Model
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RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
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From the Mediterranean to the Pacific: re-circumscription towardsNotelaea s.l.and historical biogeography of a generic complex in Oleinae (Oleaceae)
inferredcites →https://doi.org/10.1093/gigascience/giab008openalex-snapshot
Twelve years of SAMtools and BCFtools
inferredcites →https://doi.org/10.1093/molbev/msab063openalex-snapshot
Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus
inferredcites →https://doi.org/10.1093/molbev/msad013openalex-snapshot
Re-evaluating Homoploid Reticulate Evolution in Helianthus Sunflowers
inferredcites →https://doi.org/10.1093/molbev/msj030openalex-snapshot
Application of Phylogenetic Networks in Evolutionary Studies
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/molbev/msr048openalex-snapshot
Testing for Ancient Admixture between Closely Related Populations
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
inferredcites →https://doi.org/10.1093/nsr/nwac280openalex-snapshot
Extensive gene flow in secondary sympatry after allopatric speciation
inferredcites →https://doi.org/10.1093/nsr/nwx156openalex-snapshot
Is the East Asian flora ancient or not?
inferredcites →https://doi.org/10.1093/sysbio/syaa066openalex-snapshot
Disentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae s.l
inferredcites →https://doi.org/10.1093/sysbio/syaa083openalex-snapshot
The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales
inferredcites →https://doi.org/10.1093/sysbio/syq084openalex-snapshot
Coalescent Histories on Phylogenetic Networks and Detection of Hybridization Despite Incomplete Lineage Sorting
inferredcites →https://doi.org/10.1093/sysbio/syv023openalex-snapshot
Detection and Polarization of Introgression in a Five-Taxon Phylogeny
inferredcites →https://doi.org/10.1093/sysbio/syw083openalex-snapshot
Ancestral Gene Flow and Parallel Organellar Genome Capture Result in Extreme Phylogenomic Discord in a Lineage of Angiosperms
inferredcites →https://doi.org/10.1093/sysbio/syy023openalex-snapshot
HyDe: A Python Package for Genome-Scale Hybridization Detection
inferredcites →https://doi.org/10.1101/gr.210948.116openalex-snapshot
Speciation network in Laurasiatheria: retrophylogenomic signals
inferredcites →https://doi.org/10.1104/pp.16.01340openalex-snapshot
Hybridization in Plants: Old Ideas, New Techniques
inferredcites →https://doi.org/10.1111/(issn)1095-8312openalex-snapshot
Biological Journal of the Linnean Society
inferredcites →https://doi.org/10.1111/1755-0998.13016openalex-snapshot
Phylogenomics using low‐depth whole genome sequencing: A case study with the olive tribe
inferredcites →https://doi.org/10.1111/1755-0998.13265openalex-snapshot
Dsuite ‐ Fast D ‐statistics and related admixture evidence from VCF files
inferredcites →https://doi.org/10.1111/2041-210x.12199openalex-snapshot
BAMM tools: an R package for the analysis of evolutionary dynamics on phylogenetic trees
inferredcites →https://doi.org/10.1111/2041-210x.12626openalex-snapshot
Bayesian model selection with BAMM: effects of the model prior on the inferred number of diversification shifts
inferredcites →https://doi.org/10.1111/bij.12509openalex-snapshot
Museomics illuminate the history of an extinct, paleoendemic plant lineage (Hesperelaea, Oleaceae) known from an 1875 collection from Guadalupe Island, Mexico
inferredcites →https://doi.org/10.1111/j.0908-8857.2004.03297.xopenalex-snapshot
Glacial history and colonization of Europe by the blue tit Parus caeruleus
inferredcites →https://doi.org/10.1111/j.1365-2699.2006.01653.xopenalex-snapshot
Plastid and nuclear DNA polymorphism reveals historical processes of isolation and reticulation in the olive tree complex ( Olea europaea )
inferredcites →https://doi.org/10.1111/j.1474-919x.1971.tb05144.xopenalex-snapshot
EVOLUTIONARY ASPECTS OF FRUIT‐EATING BY BIRDS
inferredcites →https://doi.org/10.1111/j.1759-6831.2010.00099.xopenalex-snapshot
Molecular phylogeny of Osmanthus (Oleaceae) based on non-coding chloroplast and nuclear ribosomal internal transcribed spacer regions
inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00169.xopenalex-snapshot
phytools: an R package for phylogenetic comparative biology (and other things)
inferredcites →https://doi.org/10.1111/jbi.13229openalex-snapshot
Shifts in plant distributions in response to climate warming in a biodiversity hotspot, the Hengduan Mountains
inferredcites →https://doi.org/10.1111/jse.12745openalex-snapshot
A phylogenomic perspective on gene tree conflict and character evolution in Caprifoliaceae using target enrichment data, with Zabelioideae recognized as a new subfamily
inferredcites →https://doi.org/10.1111/jse.12809openalex-snapshot
Evolutionary origin of species diversity on the Qinghai–Tibet Plateau
inferredcites →https://doi.org/10.1111/tpj.15858openalex-snapshot
A chromosome‐level genome of Syringa oblata provides new insights into chromosome formation in Oleaceae and evolutionary history of lilacs
inferredcites →https://doi.org/10.1111/tpj.16334openalex-snapshot
Post‐hybridization introgression and natural selection promoted genomic divergence of Aegilops speltoides and the four S*‐genome diploid species
inferredcites →https://doi.org/10.1126/science.1188021openalex-snapshot
A Draft Sequence of the Neandertal Genome
inferredcites →https://doi.org/10.1126/science.42.1074.161openalex-snapshot
The Proceedings of the National Academy of Sciences
inferredcites →https://doi.org/10.1126/science.aaw2090openalex-snapshot
Genomic architecture and introgression shape a butterfly radiation
inferredcites →https://doi.org/10.11646/phytotaxa.436.3.6openalex-snapshot
Revisiting the phylogeny and taxonomy of Osmanthus (Oleaceae) including description of the new genus Chengiodendron
inferredcites →https://doi.org/10.1186/1471-2105-8-460openalex-snapshot
Dendroscope: An interactive viewer for large phylogenetic trees
inferredcites →https://doi.org/10.1186/1471-2105-9-322openalex-snapshot
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships
inferredcites →https://doi.org/10.1186/1471-2148-10-302openalex-snapshot
A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
inferredcites →https://doi.org/10.1186/1471-2164-15-162openalex-snapshot
SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data
inferredcites →https://doi.org/10.1186/1471-2164-16-s10-s2openalex-snapshot
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inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot
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inferredcites →https://doi.org/10.1186/s12870-021-03236-7openalex-snapshot
Overexpression of a carrot BCH gene, DcBCH1, improves tolerance to drought in Arabidopsis thaliana
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OrthoFinder: phylogenetic orthology inference for comparative genomics
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GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
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inferredcites →https://doi.org/10.1371/journal.pgen.1002660openalex-snapshot
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inferredcites →https://doi.org/10.1371/journal.pgen.1002967openalex-snapshot
Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data
inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot
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Threatened Species List of China’s Higher Plants
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inferredcites →https://doi.org/10.2307/4120313openalex-snapshot
Osmanthus decorus and Disjunct Asiatic-European Distributions in the Oleaceae
inferredcites →https://doi.org/10.24823/nrbge.1958.2527openalex-snapshot
A MONOGRAPHIC REVISION OF OSMANTHUS IN ASIA AND AMERICA
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Growth-development peculiarities of some rare and endangered plants in nature and culture
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R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3389/fevo.2020.616741openalex-snapshot
Reticulate Evolution, Ancient Chloroplast Haplotypes, and Rapid Radiation of the Australian Plant Genus Adenanthos (Proteaceae)
inferredcites →https://doi.org/10.3389/fgene.2014.00004openalex-snapshot
Evolutionary diversifications of plants on the Qinghai-Tibetan Plateau
inferredcites →https://doi.org/10.3389/fpls.2016.02022openalex-snapshot
Phylogenetic and Taxonomic Status Analyses of the Abaso Section from Multiple Nuclear Genes and Plastid Fragments Reveal New Insights into the North America Origin of Populus (Salicaceae)
inferredcites →https://doi.org/10.3389/fpls.2018.00099openalex-snapshot
Molecular Phylogeny and Dating of Forsythieae (Oleaceae) Provide Insight into the Miocene History of Eurasian Temperate Shrubs
inferredcites →https://doi.org/10.3389/fpls.2020.00361openalex-snapshot
Plastome Evolution in Saxifragaceae and Multiple Plastid Capture Events Involving Heuchera and Tiarella
inferredcites →https://doi.org/10.3406/revec.1988.5424openalex-snapshot
Fruit choice and seed dissemination by birds and mammals in the evergreen forests of upland Malawi
inferredcites →https://doi.org/10.3732/ajb.91.10.1700openalex-snapshot
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inferredcites →https://doi.org/10.3906/bot-1008-42openalex-snapshot
Reproductive biology studies towards the conservation of two rare species of Colchic flora, Arbutus andrachne and Osmanthus decorus
inferredcites →https://doi.org/10.4161/fly.19695openalex-snapshot
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
inferredcites →https://doi.org/10.5281/zenodo.1463215openalex-snapshot
nmatzke/BioGeoBEARS: BioGeoBEARS: BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.11646/phytotaxa.684.1.2zenodo-depositor-declared
An overview of the genus Osmanthus (Oleaceae) in Vietnam, with two new records and lectotypifications
inferred← citeshttps://doi.org/10.1002/tax.70166openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.palaeo.2026.114017openalex-snapshot
Asymmetric introgression and reticulate evolution result from palaeoclimate-driven range dynamics of the Smilax hispida group in North and Central America
inferred← citeshttps://doi.org/10.1016/j.tfp.2025.100983openalex-snapshot
Chloroplast DNA Phylogeography of Osmanthus cooperi: Diversity, Refugia, and Conservation
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108327openalex-snapshot
Phylogenomic and morphological evidence supports the reinstatement of the bamboo genus Clavinodum from Oligostachyum (Poaceae: Bambusoideae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108472openalex-snapshot
Hybridization and incomplete lineage sorting characterize the evolutionary history of two East Asian clades of Stewartia (Theaceae)
inferred← citeshttps://doi.org/10.1098/rsbl.2025.0444openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2024.06.28.601132openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/cla.70025openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s12870-026-08580-0openalex-snapshot
Genomic divergence, introgression and KASP fingerprinting panel development in five cultivar groups of sweet osmanthus
inferred← citeshttps://doi.org/10.17475/kastorman.1845395openalex-snapshot
Molecular Phylogeny of Medicinal-Aromatic Plant Osmanthus decorus from Artvin, Türkiye
inferred← citeshttps://doi.org/10.3390/plants13121653openalex-snapshot
Phylogeographic Structure and Population Dynamics of Baoxing Osmanthus (Osmanthus serrulatus), an Endemic Species from the Southwest Sichuan Basin, China
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