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Improved de novo genomic assembly for the domestic donkey
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Subchromosomal karyotype evolution in Equidae
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Y Chromosome Uncovers the Recent Oriental Origin of Modern Stallions
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The cold climate geomorphology of the Eastern Cape Drakensberg: A reevaluation of past climatic conditions during the last glacial cycle in Southern Africa
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Gene expression patterns associated with infertility in humans and rodent models
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Simulation of the Last Glacial Maximum climate over East Asia with a regional climate model nested in a general circulation model
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Chromosomal rearrangements and the genomic distribution of gene-expression divergence in humans and chimpanzees
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The genomics of speciation-with-gene-flow
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Chromosomal speciation revisited: rearranging theory with pieces of evidence
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The African wild ass (Equus africanus): conservation status in the horn of Africa
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Chromosomal rearrangements and speciation
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Accurate whole human genome sequencing using reversible terminator chemistry
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Inference of human population history from individual whole-genome sequences
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Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
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Discovery of lost diversity of paternal horse lineages using ancient DNA
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Development of Middle Stone Age innovation linked to rapid climate change
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A molecular basis for classic blond hair color in Europeans
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The Parkinson's disease–linked proteins Fbxo7 and Parkin interact to mediate mitophagy
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Annotated Manhattan plots and QQ plots for GWAS using R, Revisited
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Annotated Manhattan plots and QQ plots for GWAS using R, Revisited
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Donkey genome and insight into the imprinting of fast karyotype evolution
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Domestication of the donkey: Timing, processes, and indicators
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Speciation with gene flow in equids despite extensive chromosomal plasticity
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Prehistoric genomes reveal the genetic foundation and cost of horse domestication
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Rates of evolution in seed plants: Net increase in diversity of chromosome numbers and species numbers through time
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Rapid speciation and chromosomal evolution in mammals.
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Gene prediction with a hidden Markov model and a new intron submodel
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CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
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Fast and accurate short read alignment with Burrows–Wheeler transform
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QUAST: quality assessment tool for genome assemblies
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Recombination suppression by heterozygous Robertsonian chromosomes in the mouse.
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Association of genetic markers within the KIT and KITLG genes with human male infertility
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Assessing the gene space in draft genomes
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WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013
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The BioMart community portal: an innovative alternative to large, centralized data repositories
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Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage
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Bruce J. MacFadden., Fossil Horses: Systematics, Paleobiology, and Evolution of the Family Equidae.
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Ancient DNA from Nubian and Somali wild ass provides insights into donkey ancestry and domestication
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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
inferredcites →https://doi.org/10.1101/gr.229202openalex-snapshot
BLAT —The BLAST -Like Alignment Tool
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FOSSIL HORSES: SYSTEMATICS, PALEOBIOLOGY, AND EVOLUTION OF THE FAMILY EQUIDAE
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SKEPTICISM TOWARDS SANTA ROSALIA, OR WHY ARE THERE SO FEW KINDS OF ANIMALS?
inferredcites →https://doi.org/10.1126/science.1096008openalex-snapshot
African Origins of the Domestic Donkey
inferredcites →https://doi.org/10.1126/science.1178158openalex-snapshot
Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse
inferredcites →https://doi.org/10.1126/science.aam5298openalex-snapshot
Ancient genomic changes associated with domestication of the horse
inferredcites →https://doi.org/10.1128/mcb.00498-13openalex-snapshot
The PR/SET Domain Zinc Finger Protein Prdm4 Regulates Gene Expression in Embryonic Stem Cells but Plays a Nonessential Role in the Developing Mouse Embryo
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Sertoli Cell-Only Syndrome: Behind the Genetic Scenes
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Comparative mapping in equids: the asine X chromosome is rearranged compared to horse and Hartmann’s mountain zebra
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Sperm studies in heterozygote inversion carriers: a review
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Aldehyde dehydrogenase 1a1 is dispensable for stem cell function in the mouse hematopoietic and nervous systems
inferredcites →https://doi.org/10.1186/1471-2105-12-491openalex-snapshot
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot
Versatile and open software for comparing large genomes
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ANGSD: Analysis of Next Generation Sequencing Data
inferredcites →https://doi.org/10.1186/s13059-015-0721-2openalex-snapshot
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
inferredcites →https://doi.org/10.1371/journal.pone.0060015openalex-snapshot
Identification of Genetic Variation on the Horse Y Chromosome and the Tracing of Male Founder Lineages in Modern Breeds
inferredcites →https://doi.org/10.1371/journal.pone.0086860openalex-snapshot
Genome-Wide Detection of Copy Number Variations among Diverse Horse Breeds by Array CGH
inferredcites →https://doi.org/10.1534/genetics.105.047985openalex-snapshot
Chromosome Inversions, Local Adaptation and Speciation
inferredcites →https://doi.org/10.1620/tjem.224.111openalex-snapshot
Human t-Complex Protein 11 (TCP11), a Testis-Specific Gene Product, Is a Potential Determinant of the Sperm Morphology
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Fossil Horses: Systematics, Paleobiology, and Evolution of the Family Equidae.
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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MTaxi: A comparative tool for taxon identification of ultra low coverage ancient genomes
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MTaxi: A comparative tool for taxon identification of ultra low coverage ancient genomes
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MTaxi: A comparative tool for taxon identification of ultra low coverage ancient genomes
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An Ancient DNA Perspective on Horse Evolution
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African Donkey Genetic Resources, Diversity and Breeding Strategies
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Challenges in Donkey Conservation and Breeding: Historical, Genetic, and Sociocultural Perspectives
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Unraveling the genetic and physiological potential of donkeys: insights from genomics, proteomics, and metabolomics approaches
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Genetic diversity of the Y-chromosome in domestic animals: from evolutionary insights to functional implications
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The evolution and domestication of horses and donkeys
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Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample
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Genetics, Evolution, and Physiology of Donkeys and Mules
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Donkey Industry in China: Current Aspects, Suggestions and Future Challenges
inferred← citeshttps://doi.org/10.1016/j.jgg.2024.11.002openalex-snapshot
Improved chromosome-level donkey (Equus asinus) genome provides insights into genome and chromosome evolution
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Donkey genomes provide new insights into domestication and selection for coat color
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The origins and spread of domestic horses from the Western Eurasian steppes
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The horse Y chromosome as an informative marker for tracing sire lines
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Extinction of chromosomes due to specialization is a universal occurrence
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Refining the evolutionary tree of the horse Y chromosome
inferred← citeshttps://doi.org/10.1038/s41598-023-47583-xopenalex-snapshot
Trio-binning of a hinny refines the comparative organization of the horse and donkey X chromosomes and reveals novel species-specific features
inferred← citeshttps://doi.org/10.1038/s41598-023-50253-7openalex-snapshot
Whole-genome sequencing provides novel insights into the evolutionary history and genetic adaptation of reindeer populations in northern Eurasia
inferred← citeshttps://doi.org/10.1038/s42003-024-06337-9openalex-snapshot
A metagenomic analysis of the phase 2 Anopheles gambiae 1000 genomes dataset reveals a wide diversity of cobionts associated with field collected mosquitoes
inferred← citeshttps://doi.org/10.1080/10495398.2022.2053145openalex-snapshot
Single nucleotide polymorphisms (SNPs) and indels identified from whole-genome re-sequencing of four Chinese donkey breeds
inferred← citeshttps://doi.org/10.1093/jas/skae165openalex-snapshot
Analysis of ddRAD-seq data provides new insights into the genomic structure and patterns of diversity in Italian donkey populations
inferred← citeshttps://doi.org/10.1101/2023.08.16.553162openalex-snapshot
Whole genome sequencing provides novel insights into the evolutionary history and genetic adaptations of reindeer populations in northern Eurasia
inferred← citeshttps://doi.org/10.1101/823047openalex-snapshot
Comparative transcriptome analysis of mule uncovered several heterosis-related genes for improving muscular endurance and cognition
inferred← citeshttps://doi.org/10.1111/age.13211openalex-snapshot
Genetic architectures and selection signatures of body height in Chinese indigenous donkeys revealed by next‐generation sequencing
inferred← citeshttps://doi.org/10.1111/mec.17440openalex-snapshot
The first complete genome of the extinct European wild ass ( Equus hemionus hydruntinus )
inferred← citeshttps://doi.org/10.1126/science.abo3503openalex-snapshot
The genomic history and global expansion of domestic donkeys
inferred← citeshttps://doi.org/10.1126/science.adc9691openalex-snapshot
Early dispersal of domestic horses into the Great Plains and northern Rockies
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63,XX, SRY‐negative, pseudohermaphroditism in a Somali wild ass ( Equus asinus somalicus )
inferred← citeshttps://doi.org/10.1146/annurev-animal-061220-023118openalex-snapshot
Genomics and the Evolutionary History of Equids
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LDscaff: LD-based scaffolding of de novo genome assemblies
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Genetic diversity, evolution and selection in the major histocompatibility complex DRB and DQB loci in the family Equidae
inferred← citeshttps://doi.org/10.1186/s12864-021-07984-6openalex-snapshot
Genome collinearity analysis illuminates the evolution of donkey chromosome 1 and horse chromosome 5 in perissodactyls: A comparative study
inferred← citeshttps://doi.org/10.1186/s12864-022-09033-2openalex-snapshot
eSMC: a statistical model to infer admixture events from individual genomics data
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Experimental cross-species infection of donkeys with equine hepacivirus and analysis of host immune signatures
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Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples
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Mitochondrial DNA Variation and Genetic Relationships in Indian Halari Donkey Breed using D-Loop Region
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Gestação e parâmetros fisiológicos neonatais em potros muares
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Allele-specific expression and alternative splicing in horse譫onkey and cattle讁ak hybrids
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Assessing DNA Sequence Alignment Methods for Characterizing Ancient Genomes and Methylomes
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Transcriptome Atlas of 16 Donkey Tissues
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Chromosome-Level Haplotype Assembly for Equus asinu
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Comparative Transcriptomics Uncover the Uniqueness of Oocyte Development in the Donkey
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A review of genetic resources and trends of omics applications in donkey research: focus on China
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Structural variations in livestock genomes and their associations with phenotypic traits: a review
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Comparative Transcriptome Profiling Analysis Uncovers Novel Heterosis-Related Candidate Genes Associated with Muscular Endurance in Mules
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Detection of Selection Signatures Underlying Production and Adaptive Traits Based on Whole-Genome Sequencing of Six Donkey Populations
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Exploring Genetic Markers: Mitochondrial DNA and Genomic Screening for Biodiversity and Production Traits in Donkeys
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The Donkey Genome: From Evolutionary Insights to Sustainable Breeding Strategies
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Preliminary Evaluation of Muscle Fiber Composition in the Middle Gluteal Muscle in Race Mules and Mammoth Donkeys
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Genetic Structure and Selection Signals in Hetian Gray Donkeys and Xinjiang Donkeys from Xinjiang, China
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Origin, Evolution, and Research Development of Donkeys
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Analysis of the Whole-Genome Sequences from an Equus Parent-Offspring Trio Provides Insight into the Genomic Incompatibilities in the Hybrid Mule
inferred← citeshttps://doi.org/10.3390/genes13122272openalex-snapshot
Unlocking Horse Y Chromosome Diversity
inferred← citeshttps://doi.org/10.3390/genes14051081openalex-snapshot
A Genome-Wide Association Study of the Chest Circumference Trait in Xinjiang Donkeys Based on Whole-Genome Sequencing Technology
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Insertion of Telomeric Repeats in the Human and Horse Genomes: An Evolutionary Perspective
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Additional file 1 of LDscaff: LD-based scaffolding of de novo genome assemblies
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Additional file 1 of Genome collinearity analysis illuminates the evolution of donkey chromosome 1 and horse chromosome 5 in perissodactyls: A comparative study
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The genomic history of horse domestication and management : an ancient DNA perspective
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Epigenomic study on the domestication of the horse using ancient DNA
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Radiocarbon and genomic evidence for the survival of Equus Sussemionus until the late Holocene
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