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Conformational dynamics of SARS-CoV-2 trimeric spike glycoprotein in complex with receptor ACE2 revealed by cryo-EM

https://doi.org/10.1126/sciadv.abe5575
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor
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High resolution single particle refinement in EMAN2.1
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Cryo-electron microscopy structures of the SARS-CoV spike glycoprotein reveal a prerequisite conformational state for receptor binding
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HIV-1 evades antibody-mediated neutralization through conformational masking of receptor-binding sites
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Cryo-electron microscopy structure of a coronavirus spike glycoprotein trimer
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Cryo-EM structures of MERS-CoV and SARS-CoV spike glycoproteins reveal the dynamic receptor binding domains
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Prevention of overfitting in cryo-EM structure determination
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cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
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MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
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Addressing preferred specimen orientation in single-particle cryo-EM through tilting
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A new class of broadly neutralizing antibodies that target the glycan loop of Zika virus envelope protein
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Key residues of the receptor binding motif in the spike protein of SARS-CoV-2 that interact with ACE2 and neutralizing antibodies
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SARS-CoV-2 spike-protein D614G mutation increases virion spike density and infectivity
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Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor
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Structures and distributions of SARS-CoV-2 spike proteins on intact virions
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Structural basis for human coronavirus attachment to sialic acid receptors
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SARS-CoV-2 and bat RaTG13 spike glycoprotein structures inform on virus evolution and furin-cleavage effects
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A thermostable, closed SARS-CoV-2 spike protein trimer
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Stabilized coronavirus spikes are resistant to conformational changes induced by receptor recognition or proteolysis
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Publisher Correction: Stabilized coronavirus spikes are resistant to conformational changes induced by receptor recognition or proteolysis
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Immunogenicity and structures of a rationally designed prefusion MERS-CoV spike antigen
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Tectonic conformational changes of a coronavirus spike glycoprotein promote membrane fusion
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Cell entry mechanisms of SARS-CoV-2
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Deciphering key features in protein structures with the new ENDscript server
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SWISS-MODEL: homology modelling of protein structures and complexes
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Engineering trimeric fibrous proteins based on bacteriophage T4 adhesins
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The Spike D614G mutation increases SARS-CoV-2 infection of multiple human cell types
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D614G mutation of SARS-CoV-2 spike protein enhances viral infectivity
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PHENIX: a comprehensive Python-based system for macromolecular structure solution
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Coot : model-building tools for molecular graphics
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PHENIX : a comprehensive Python-based system for macromolecular structure solution
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Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures
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A pipeline approach to single-particle processing in RELION
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Structure of SARS Coronavirus Spike Receptor-Binding Domain Complexed with Receptor
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Conformational dynamics of single HIV-1 envelope trimers on the surface of native virions
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Structure of human TFIID and mechanism of TBP loading onto promoter DNA
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Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation
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Structural basis for the recognition of SARS-CoV-2 by full-length human ACE2
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Site-specific glycan analysis of the SARS-CoV-2 spike
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Distinct conformational states of SARS-CoV-2 spike protein
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Two Mutations Were Critical for Bat-to-Human Transmission of Middle East Respiratory Syndrome Coronavirus
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The Coronavirus Spike Protein Is a Class I Virus Fusion Protein: Structural and Functional Characterization of the Fusion Core Complex
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Structure, Function, and Evolution of Coronavirus Spike Proteins
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Cryo-EM structure of the SARS coronavirus spike glycoprotein in complex with its host cell receptor ACE2
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Characterisation of molecular motions in cryo-EM single-particle data by multi-body refinement in RELION
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New tools for automated high-resolution cryo-EM structure determination in RELION-3
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Author response: New tools for automated high-resolution cryo-EM structure determination in RELION-3
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The Spike D614G mutation increases SARS-CoV-2 infection of multiple human cell types

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1016/j.jiac.2022.04.018openalex-snapshot
Neutralising activity and antibody titre in 10 patients with breakthrough infections of the SARS-CoV-2 Omicron variant in Japan
inferred← citeshttps://doi.org/10.1016/j.jinf.2021.06.001openalex-snapshot
Structural dynamics of SARS-CoV-2 variants: A health monitoring strategy for anticipating Covid-19 outbreaks
inferred← citeshttps://doi.org/10.1016/j.jksus.2022.102086openalex-snapshot
Computational studies on potential new anti-Covid-19 agents with a multi-target mode of action
inferred← citeshttps://doi.org/10.1016/j.jmgm.2022.108379openalex-snapshot
Modelling SARS-CoV-2 spike-protein mutation effects on ACE2 binding
inferred← citeshttps://doi.org/10.1016/j.jsb.2023.108042openalex-snapshot
Predicting virus Fitness: Towards a structure-based computational model
inferred← citeshttps://doi.org/10.1016/j.jtha.2025.03.030openalex-snapshot
Angiostatin—a novel SARS-CoV-2 inhibitor and biomarker underlying COVID-19 pathophysiology
inferred← citeshttps://doi.org/10.1016/j.jviromet.2021.114424openalex-snapshot
Screening of potential spike glycoprotein / ACE2 dual antagonists against COVID-19 in silico molecular docking
inferred← citeshttps://doi.org/10.1016/j.meegid.2021.105164openalex-snapshot
Haplotype distribution of SARS-CoV-2 variants in low and high vaccination rate countries during ongoing global COVID-19 pandemic in early 2021
inferred← citeshttps://doi.org/10.1016/j.micres.2022.127204openalex-snapshot
Omicron variant: Current insights and future directions
inferred← citeshttps://doi.org/10.1016/j.microc.2025.113187openalex-snapshot
Precision mapping of the functional epitope of a SARS-CoV-2 neutralizing antibody via hydrogen–deuterium exchange mass spectrometry
inferred← citeshttps://doi.org/10.1016/j.mran.2024.100290openalex-snapshot
The wind of change: Gibbs energy of binding and infectivity evolution of Omicron BA.2.86 Pirola, EG.5.1, XBB.1.16 Arcturus, CH.1.1 and BN.1 variants of SARS-CoV-2
inferred← citeshttps://doi.org/10.1016/j.nantod.2022.101580openalex-snapshot
Multivalent ACE2 engineering—A promising pathway for advanced coronavirus nanomedicine development
inferred← citeshttps://doi.org/10.1016/j.sbi.2022.102388openalex-snapshot
ACE2, B0AT1, and SARS-CoV-2 spike protein: Structural and functional implications
inferred← citeshttps://doi.org/10.1016/j.sbi.2023.102619openalex-snapshot
Mechanism and evolution of human ACE2 binding by SARS-CoV-2 spike
inferred← citeshttps://doi.org/10.1016/j.sbi.2023.102664openalex-snapshot
Cryo-EM and cryo-ET of the spike, virion, and antibody neutralization of SARS-CoV-2 and VOCs
inferred← citeshttps://doi.org/10.1016/j.scib.2023.11.020openalex-snapshot
Quantitative single-virus tracking for revealing the dynamics of SARS-CoV-2 fusion with plasma membrane
inferred← citeshttps://doi.org/10.1016/j.sjbs.2022.103372openalex-snapshot
A comprehensive review on Covid-19 Omicron (B.1.1.529) variant
inferred← citeshttps://doi.org/10.1016/j.smim.2021.101533openalex-snapshot
Mutations of SARS-CoV-2 spike protein: Implications on immune evasion and vaccine-induced immunity
inferred← citeshttps://doi.org/10.1016/j.snb.2022.132427openalex-snapshot
Enhanced susceptibility of SARS-CoV-2 spike RBD protein assay targeted by cellular receptors ACE2 and CD147: Multivariate data analysis of multisine impedimetric response
inferred← citeshttps://doi.org/10.1016/j.str.2026.08.007openalex-snapshot
Dissociation and reassembly of the trimeric ectodomain of a baculoviral fusion protein during low-pH treatment
inferred← citeshttps://doi.org/10.1016/j.tibs.2021.06.001openalex-snapshot
Cell entry by SARS-CoV-2
inferred← citeshttps://doi.org/10.1016/j.tibtech.2026.02.017openalex-snapshot
Synthetic RNA–protein decoy granules prevent SARS-CoV-2 infection
inferred← citeshttps://doi.org/10.1016/j.vaccine.2023.03.031openalex-snapshot
Effectiveness of second booster compared to first booster and protection conferred by previous SARS-CoV-2 infection against symptomatic Omicron BA.2 and BA.4/5 in France
inferred← citeshttps://doi.org/10.1016/j.vaccine.2024.126448openalex-snapshot
Intranasal booster with SARS-CoV-2 RBD protein fused to E. coli enterotoxin a subunit after primary mRNA vaccination in mice
inferred← citeshttps://doi.org/10.1016/j.virol.2022.03.001openalex-snapshot
Kappa-RBD produced by glycoengineered Pichia pastoris elicited high neutralizing antibody titers against pseudoviruses of SARS-CoV-2 variants
inferred← citeshttps://doi.org/10.1016/j.virol.2023.109850openalex-snapshot
Physicochemical effects of emerging exchanges on the spike protein's RBM of the SARS-CoV-2 Omicron subvariants BA.1-BA.5 and its influence on the biological properties and attributes developed by these subvariants
inferred← citeshttps://doi.org/10.1016/j.virol.2024.110383openalex-snapshot
Architects of infection: A structural overview of SARS-related coronavirus spike glycoproteins
inferred← citeshttps://doi.org/10.1016/j.virusres.2022.198711openalex-snapshot
Systematic profiling of antigen bias in humoral response against SARS-CoV-2
inferred← citeshttps://doi.org/10.1016/j.xcrm.2024.101553openalex-snapshot
A structure-function analysis shows SARS-CoV-2 BA.2.86 balances antibody escape and ACE2 affinity
inferred← citeshttps://doi.org/10.1016/j.xpro.2021.101024openalex-snapshot
Detection of SARS-CoV-2 spike protein binding to ACE2 in living cells by TR-FRET
inferred← citeshttps://doi.org/10.1016/s2666-5247(23)00011-3openalex-snapshot
Advances in developing ACE2 derivatives against SARS-CoV-2
inferred← citeshttps://doi.org/10.1021/acs.biochem.1c00139openalex-snapshot
Comparative Perturbation-Based Modeling of the SARS-CoV-2 Spike Protein Binding with Host Receptor and Neutralizing Antibodies: Structurally Adaptable Allosteric Communication Hotspots Define Spike Sites Targeted by Global Circulating Mutations
inferred← citeshttps://doi.org/10.1021/acs.biochem.2c00301openalex-snapshot
Energetics of Spike Protein Opening of SARS-CoV-1 and SARS-CoV-2 and Its Variants of Concern: Implications in Host Receptor Scanning and Transmission
inferred← citeshttps://doi.org/10.1021/acs.bioconjchem.5c00482openalex-snapshot
A Dual-Targeted, Long-Circulating, and Intelligent-Responsive Antiviral Agent Suppresses SARS-CoV-2 by Blocking Viral Entry and Replication
inferred← citeshttps://doi.org/10.1021/acs.inorgchem.4c04974openalex-snapshot
Structural Changes at the Zinc Active Site of ACE2 on Binding the SARS-CoV-2 Spike Protein Receptor Binding Domain
inferred← citeshttps://doi.org/10.1021/acs.jcim.1c00560openalex-snapshot
Key Interacting Residues between RBD of SARS-CoV-2 and ACE2 Receptor: Combination of Molecular Dynamics Simulation and Density Functional Calculation
inferred← citeshttps://doi.org/10.1021/acs.jcim.1c01306openalex-snapshot
Evaluation of Interactions between SARS-CoV-2 RBD and Full-Length ACE2 with Coarse-Grained Molecular Dynamics Simulations
inferred← citeshttps://doi.org/10.1021/acs.jcim.2c00124openalex-snapshot
Landscape-Based Protein Stability Analysis and Network Modeling of Multiple Conformational States of the SARS-CoV-2 Spike D614G Mutant: Conformational Plasticity and Frustration-Induced Allostery as Energetic Drivers of Highly Transmissible Spike Variants
inferred← citeshttps://doi.org/10.1021/acs.jcim.2c01634openalex-snapshot
Exploring and Learning the Universe of Protein Allostery Using Artificial Intelligence Augmented Biophysical and Computational Approaches
inferred← citeshttps://doi.org/10.1021/acs.jcim.3c00041openalex-snapshot
Self-Association of ACE-2 with Different RBD Amounts: A Dynamic Simulation Perspective on SARS-CoV-2 Infection
inferred← citeshttps://doi.org/10.1021/acs.jcim.3c00778openalex-snapshot
Markov State Models and Perturbation-Based Approaches Reveal Distinct Dynamic Signatures and Hidden Allosteric Pockets in the Emerging SARS-Cov-2 Spike Omicron Variant Complexes with the Host Receptor: The Interplay of Dynamics and Convergent Evolution Modulates Allostery and Functional Mechanisms
inferred← citeshttps://doi.org/10.1021/acs.jcim.3c00803openalex-snapshot
Exploring the Fatty Acid Binding Pocket in the SARS-CoV-2 Spike Protein – Confirmed and Potential Ligands
inferred← citeshttps://doi.org/10.1021/acs.jcim.3c01857openalex-snapshot
AlphaFold2-Enabled Atomistic Modeling of Structure, Conformational Ensembles, and Binding Energetics of the SARS-CoV-2 Omicron BA.2.86 Spike Protein with ACE2 Host Receptor and Antibodies: Compensatory Functional Effects of Binding Hotspots in Modulating Mechanisms of Receptor Binding and Immune…
inferred← citeshttps://doi.org/10.1021/acs.jctc.1c00372openalex-snapshot
Dynamic Profiling of Binding and Allosteric Propensities of the SARS-CoV-2 Spike Protein with Different Classes of Antibodies: Mutational and Perturbation-Based Scanning Reveals the Allosteric Duality of Functionally Adaptable Hotspots
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.1c00320openalex-snapshot
Probing the Allosteric Inhibition Mechanism of a Spike Protein Using Molecular Dynamics Simulations and Active Compound Identifications
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.3c00576openalex-snapshot
C-2 Thiophenyl Tryptophan Trimers Inhibit Cellular Entry of SARS-CoV-2 through Interaction with the Viral Spike (S) Protein
inferred← citeshttps://doi.org/10.1021/acs.jpcb.0c10637openalex-snapshot
Dynamic Network Modeling of Allosteric Interactions and Communication Pathways in the SARS-CoV-2 Spike Trimer Mutants: Differential Modulation of Conformational Landscapes and Signal Transmission via Cascades of Regulatory Switches
inferred← citeshttps://doi.org/10.1021/acs.jpcb.1c04556openalex-snapshot
Accelerating COVID-19 Research Using Molecular Dynamics Simulation
inferred← citeshttps://doi.org/10.1021/acs.jpcb.2c02365openalex-snapshot
Ionization of D571 Is Coupled with SARS-CoV-2 Spike Up/Down Equilibrium Revealing the pH-Dependent Allosteric Mechanism of Receptor-Binding Domains
inferred← citeshttps://doi.org/10.1021/acs.jpcb.3c05338openalex-snapshot
Intrinsically Disordered Regions Function as a Cervical Collar to Remotely Regulate the Nodding Dynamics of SARS-CoV-2 Prefusion Spike Heads
inferred← citeshttps://doi.org/10.1021/acs.jpcb.4c01341openalex-snapshot
AlphaFold2 Predictions of Conformational Ensembles and Atomistic Simulations of the SARS-CoV-2 Spike XBB Lineages Reveal Epistatic Couplings between Convergent Mutational Hotspots that Control ACE2 Affinity
inferred← citeshttps://doi.org/10.1021/acs.jpclett.1c01548openalex-snapshot
Regulation Mechanism for the Binding between the SARS-CoV-2 Spike Protein and Host Angiotensin-Converting Enzyme II
inferred← citeshttps://doi.org/10.1021/acscentsci.1c00804openalex-snapshot
Probing Affinity, Avidity, Anticooperativity, and Competition in Antibody and Receptor Binding to the SARS-CoV-2 Spike by Single Particle Mass Analyses
inferred← citeshttps://doi.org/10.1021/acscentsci.2c01190openalex-snapshot
In Silico Discovery of Small Molecule Modulators Targeting the Achilles’ Heel of SARS-CoV-2 Spike Protein
inferred← citeshttps://doi.org/10.1021/acsinfecdis.1c00433openalex-snapshot
Structure and Mutations of SARS-CoV-2 Spike Protein: A Focused Overview
inferred← citeshttps://doi.org/10.1021/acsnano.2c06803openalex-snapshot
Spatial- and Valence-Matched Neutralizing DNA Nanostructure Blocks Wild-Type SARS-CoV-2 and Omicron Variant Infection
inferred← citeshttps://doi.org/10.1021/acsomega.1c02336openalex-snapshot
Landscape-Based Mutational Sensitivity Cartography and Network Community Analysis of the SARS-CoV-2 Spike Protein Structures: Quantifying Functional Effects of the Circulating D614G Variant
inferred← citeshttps://doi.org/10.1021/acsomega.1c03558openalex-snapshot
Atomistic Simulations and In Silico Mutational Profiling of Protein Stability and Binding in the SARS-CoV-2 Spike Protein Complexes with Nanobodies: Molecular Determinants of Mutational Escape Mechanisms
inferred← citeshttps://doi.org/10.1021/acsomega.2c00844openalex-snapshot
Small Molecules Targeting SARS-CoV-2 Spike Glycoprotein Receptor-Binding Domain
inferred← citeshttps://doi.org/10.1021/acsomega.3c00944openalex-snapshot
Evolution of Sequence and Structure of SARS-CoV-2 Spike Protein: A Dynamic Perspective
inferred← citeshttps://doi.org/10.1021/acsomega.4c10519openalex-snapshot
In Silico Discovery of a Novel Antiviral Scaffold for SARS-CoV-2 Targeting the Spike Glycoprotein through the Fatty Acid Binding Pocket
inferred← citeshttps://doi.org/10.1021/acsomega.5c10442openalex-snapshot
A Tetrapodal Tryptophan Derivative with Multiple Exposed Free Carboxylic Acids Blocks Host Cell Entry of Omicron SARS-Cov-2 and Respiratory Syncytial Virus
inferred← citeshttps://doi.org/10.1021/jacs.1c05435openalex-snapshot
Fusion Peptide of SARS-CoV-2 Spike Rearranges into a Wedge Inserted in Bilayered Micelles
inferred← citeshttps://doi.org/10.1021/jacsau.4c00886openalex-snapshot
Quantitative Prediction of Protein–Polyelectrolyte Binding Thermodynamics: Adsorption of Heparin-Analog Polysulfates to the SARS-CoV-2 Spike Protein RBD
inferred← citeshttps://doi.org/10.1038/s41392-022-01007-wopenalex-snapshot
mRNA-based therapeutics: powerful and versatile tools to combat diseases
inferred← citeshttps://doi.org/10.1038/s41421-021-00349-zopenalex-snapshot
Structure-based evidence for the enhanced transmissibility of the dominant SARS-CoV-2 B.1.1.7 variant (Alpha)
inferred← citeshttps://doi.org/10.1038/s41421-023-00534-2openalex-snapshot
High-throughput screening of spike variants uncovers the key residues that alter the affinity and antigenicity of SARS-CoV-2
inferred← citeshttps://doi.org/10.1038/s41422-020-00438-wopenalex-snapshot
Engineered trimeric ACE2 binds viral spike protein and locks it in “Three-up” conformation to potently inhibit SARS-CoV-2 infection
inferred← citeshttps://doi.org/10.1038/s41422-021-00490-0openalex-snapshot
Structural basis for the different states of the spike protein of SARS-CoV-2 in complex with ACE2
inferred← citeshttps://doi.org/10.1038/s41422-022-00672-4openalex-snapshot
Structural and biochemical mechanism for increased infectivity and immune evasion of Omicron BA.2 variant compared to BA.1 and their possible mouse origins
inferred← citeshttps://doi.org/10.1038/s41422-024-00958-9openalex-snapshot
Structural basis for the recognition of HCoV-HKU1 by human TMPRSS2
inferred← citeshttps://doi.org/10.1038/s41467-020-20401-yopenalex-snapshot
Cryo-EM analysis of the HCoV-229E spike glycoprotein reveals dynamic prefusion conformational changes
inferred← citeshttps://doi.org/10.1038/s41467-020-20465-wopenalex-snapshot
Development and structural basis of a two-MAb cocktail for treating SARS-CoV-2 infections
inferred← citeshttps://doi.org/10.1038/s41467-021-24905-zopenalex-snapshot
A synthetic nanobody targeting RBD protects hamsters from SARS-CoV-2 infection
inferred← citeshttps://doi.org/10.1038/s41467-021-27350-0openalex-snapshot
Conformational dynamics of the Beta and Kappa SARS-CoV-2 spike proteins and their complexes with ACE2 receptor revealed by cryo-EM
inferred← citeshttps://doi.org/10.1038/s41467-022-28446-xopenalex-snapshot
Synthetic virions reveal fatty acid-coupled adaptive immunogenicity of SARS-CoV-2 spike glycoprotein
inferred← citeshttps://doi.org/10.1038/s41467-022-28528-wopenalex-snapshot
Structural basis for SARS-CoV-2 Delta variant recognition of ACE2 receptor and broadly neutralizing antibodies
inferred← citeshttps://doi.org/10.1038/s41467-022-28654-5openalex-snapshot
Cooperative multivalent receptor binding promotes exposure of the SARS-CoV-2 fusion machinery core
inferred← citeshttps://doi.org/10.1038/s41467-022-29288-3openalex-snapshot
Monospecific and bispecific monoclonal SARS-CoV-2 neutralizing antibodies that maintain potency against B.1.617
inferred← citeshttps://doi.org/10.1038/s41467-023-42200-xopenalex-snapshot
Design, structure and plasma binding of ancestral β-CoV scaffold antigens
inferred← citeshttps://doi.org/10.1038/s41467-025-63101-1openalex-snapshot
A broadly neutralizing antibody recognizes a unique epitope with a signature motif common across coronaviruses
inferred← citeshttps://doi.org/10.1038/s41541-021-00369-6openalex-snapshot
Distinguishing features of current COVID-19 vaccines: knowns and unknowns of antigen presentation and modes of action
inferred← citeshttps://doi.org/10.1038/s41586-022-04581-9openalex-snapshot
Molecular basis of receptor binding and antibody neutralization of Omicron
inferred← citeshttps://doi.org/10.1038/s41594-021-00652-zopenalex-snapshot
Effect of SARS-CoV-2 B.1.1.7 mutations on spike protein structure and function
inferred← citeshttps://doi.org/10.1038/s41598-021-01705-5openalex-snapshot
Interaction of Spike protein and lipid membrane of SARS-CoV-2 with Ursodeoxycholic acid, an in-silico analysis
inferred← citeshttps://doi.org/10.1038/s41598-022-12032-8openalex-snapshot
High-resolution analysis of long-term serum antibodies in humans following convalescence of SARS-CoV-2 infection
inferred← citeshttps://doi.org/10.1038/s41598-023-40005-yopenalex-snapshot
Spike protein mutations and structural insights of pangolin lineage B.1.1.25 with implications for viral pathogenicity and ACE2 binding affinity
inferred← citeshttps://doi.org/10.1038/s41598-023-43661-2openalex-snapshot
Influence of variant-specific mutations, temperature and pH on conformations of a large set of SARS-CoV-2 spike trimer vaccine antigen candidates
inferred← citeshttps://doi.org/10.1038/s41598-025-91469-zopenalex-snapshot
Predicting viral host codon fitness and path shifting through tree-based learning on codon usage biases and genomic characteristics
inferred← citeshttps://doi.org/10.1038/s42003-024-07422-9openalex-snapshot
Structure and dynamics of the interaction of Delta and Omicron BA.1 SARS-CoV-2 variants with REGN10987 Fab reveal mechanism of antibody action
inferred← citeshttps://doi.org/10.1039/d1cs01170gopenalex-snapshot
Interaction of SARS-CoV-2 with host cells and antibodies: experiment and simulation
inferred← citeshttps://doi.org/10.1039/d2cp01893dopenalex-snapshot
Frustration-driven allosteric regulation and signal transmission in the SARS-CoV-2 spike omicron trimer structures: a crosstalk of the omicron mutation sites allosterically regulates tradeoffs of protein stability and conformational adaptability
inferred← citeshttps://doi.org/10.1039/d3cp02042hopenalex-snapshot
Probing conformational landscapes of binding and allostery in the SARS-CoV-2 omicron variant complexes using microsecond atomistic simulations and perturbation-based profiling approaches: hidden role of omicron mutations as modulators of allosteric signaling and epistatic relationships
inferred← citeshttps://doi.org/10.1039/d3cp02628kopenalex-snapshot
Binding of synthetic nanobodies to the SARS-CoV-2 receptor-binding domain: the importance of salt bridges
inferred← citeshttps://doi.org/10.1039/d3ra00198aopenalex-snapshot
The influence of single-point mutation D614G on the binding process between human angiotensin-converting enzyme 2 and the SARS-CoV-2 spike protein-an atomistic simulation study
inferred← citeshttps://doi.org/10.1039/d3ra01764hopenalex-snapshot
Study of fusion peptide release for the spike protein of SARS-CoV-2
inferred← citeshttps://doi.org/10.1039/d4cp01372gopenalex-snapshot
Exploring conformational landscapes and binding mechanisms of convergent evolution for the SARS-CoV-2 spike Omicron variant complexes with the ACE2 receptor using AlphaFold2-based structural ensembles and molecular dynamics simulations
inferred← citeshttps://doi.org/10.1039/d5cp02468dopenalex-snapshot
Dynamic mutational profiling of binding interactions and allosteric networks in conformational ensembles of the SARS-CoV-2 spike protein complexes with classes of antibodies targeting cryptic binding sites: confluence of binding and allostery determines molecular mechanisms and hotspots of immune…
inferred← citeshttps://doi.org/10.1039/d6cp02673gopenalex-snapshot
Contrasting dynamic and mechanistic signatures of Class 3 and Class 4 neutralizing antibodies targeting SARS-CoV-2 spike protein: dissecting molecular determinants of neutralization mechanisms using a multi-pronged computational approach
inferred← citeshttps://doi.org/10.1039/d6nh00151copenalex-snapshot
Three-dimensional single-particle reconstruction by atomic force microscopy imaging and template matching allows rapid structural-based validation of recombinant SARS-CoV-2 Spike protein from a single topology image
inferred← citeshttps://doi.org/10.1042/bsr20260440openalex-snapshot
Disulfide bonds stabilize the SARS-CoV-2 RBD and preserve binding to ACE2 following thermal denaturation
inferred← citeshttps://doi.org/10.1051/bioconf/20224303034openalex-snapshot
Effect of Polysaccharide-Based Film on Morphometric Parameters of Rat liver
inferred← citeshttps://doi.org/10.1073/pnas.2303292120openalex-snapshot
A broad-spectrum macrocyclic peptide inhibitor of the SARS-CoV-2 spike protein
inferred← citeshttps://doi.org/10.1073/pnas.2404892121openalex-snapshot
The accomplices: Heparan sulfates and N-glycans foster SARS-CoV-2 spike:ACE2 receptor binding and virus priming
inferred← citeshttps://doi.org/10.1080/07391102.2021.1933594openalex-snapshot
Computational analysis of protein stability and allosteric interaction networks in distinct conformational forms of the SARS-CoV-2 spike D614G mutant: reconciling functional mechanisms through allosteric model of spike regulation
inferred← citeshttps://doi.org/10.1080/07391102.2022.2032354openalex-snapshot
Mutations in the receptor-binding domain of human SARS CoV-2 spike protein increases its affinity to bind human ACE-2 receptor
inferred← citeshttps://doi.org/10.1080/10408347.2026.2701969openalex-snapshot
Recent Advances in Structural and Functional Characterization of Biological Macromolecules
inferred← citeshttps://doi.org/10.1080/13543776.2025.2494860openalex-snapshot
A patent review of anti-coronavirus agents targeting the spike-ACE2 interaction (2019–present)
inferred← citeshttps://doi.org/10.1080/14756366.2023.2244693openalex-snapshot
Peptide foldamer-based inhibitors of the SARS-CoV-2 S protein–human ACE2 interaction
inferred← citeshttps://doi.org/10.1080/14760584.2023.2211153openalex-snapshot
Advances in SARS-CoV-2 receptor-binding domain-based COVID-19 vaccines
inferred← citeshttps://doi.org/10.1080/19420862.2022.2057832openalex-snapshot
David versus goliath: ACE2-Fc receptor traps as potential SARS-CoV-2 inhibitors
inferred← citeshttps://doi.org/10.1080/22221751.2021.2024455openalex-snapshot
Mapping cross-variant neutralizing sites on the SARS-CoV-2 spike protein
inferred← citeshttps://doi.org/10.1089/vim.2022.0122openalex-snapshot
Alpha to Omicron (Variants of Concern): Mutation Journey, Vaccines, and Therapy
inferred← citeshttps://doi.org/10.1093/bib/bbaf384openalex-snapshot
SARITA: a large language model for generating the S1 subunit of the SARS-CoV-2 spike protein
inferred← citeshttps://doi.org/10.1093/molbev/msac061openalex-snapshot
Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function
inferred← citeshttps://doi.org/10.1093/mtomcs/mfaf038openalex-snapshot
High energy resolution fluorescence detected X-ray absorption spectroscopy (HERFD-XAS) for studies of metals and metalloids in biology: current innovations and future perspectives
inferred← citeshttps://doi.org/10.1093/ve/veac063openalex-snapshot
Evolution of ACE2-independent SARS-CoV-2 infection and mouse adaption after passage in cells expressing human and mouse ACE2
inferred← citeshttps://doi.org/10.1101/2020.07.04.187989openalex-snapshot
Cryo-EM Structures Delineate a pH-Dependent Switch that Mediates Endosomal Positioning of SARS-CoV-2 Spike Receptor-Binding Domains
inferred← citeshttps://doi.org/10.1101/2020.12.25.424008openalex-snapshot
Differential Dynamic Behavior of Prefusion Spike Proteins of SARS Coronaviruses 1 and 2
inferred← citeshttps://doi.org/10.1101/2021.01.15.426849openalex-snapshot
The impact of Spike mutations on SARS-CoV-2 neutralization
inferred← citeshttps://doi.org/10.1101/2021.02.24.432666openalex-snapshot
Cryo-EM study on the homo-oligomeric ring formation of yeast TRiC/CCT subunits reveals TRiC ring assembly mechanism
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