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An Expanding Universe of Noncoding RNAs
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1006/jmbi.2000.3593openalex-snapshot
Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes 1 1Edited by M. Yaniv
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Birth of a gene: locus of neuronal BC200 snmRNA in three prosimians and human BC200 pseudogenes as archives of change in the Anthropoidea lineage
inferredcites →https://doi.org/10.1016/s0092-8674(00)80687-xopenalex-snapshot
Secondary Structure of Vertebrate Telomerase RNA
inferredcites →https://doi.org/10.1016/s0092-8674(00)80711-4openalex-snapshot
A Steroid Receptor Coactivator, SRA, Functions as an RNA and Is Present in an SRC-1 Complex
inferredcites →https://doi.org/10.1016/s0092-8674(00)80873-9openalex-snapshot
6S RNA Regulates E. coli RNA Polymerase Activity
inferredcites →https://doi.org/10.1016/s0955-0674(00)00211-8openalex-snapshot
Spliceosomal UsnRNP biogenesis, structure and function
inferredcites →https://doi.org/10.1016/s0960-9822(01)00270-6openalex-snapshot
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli
inferredcites →https://doi.org/10.1016/s0960-9822(01)00401-8openalex-snapshot
Computational identification of noncoding RNAs in E. coli by comparative genomics
inferredcites →https://doi.org/10.1016/s0966-842x(98)01379-1openalex-snapshot
Small RNAs in Escherichia coli
inferredcites →https://doi.org/10.1016/s0968-0004(97)01041-4openalex-snapshot
RNA editing: getting U into RNA
inferredcites →https://doi.org/10.1038/35047580openalex-snapshot
X-chromosome inactivation: counting, choice and initiation
inferredcites →https://doi.org/10.1038/35103511openalex-snapshot
Non–coding RNA genes and the modern RNA world
inferredcites →https://doi.org/10.1038/35104575openalex-snapshot
The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription
inferredcites →https://doi.org/10.1038/35104581openalex-snapshot
7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes
inferredcites →https://doi.org/10.1038/415810aopenalex-snapshot
The non-coding Air RNA is required for silencing autosomal imprinted genes
inferredcites →https://doi.org/10.1038/82367openalex-snapshot
RNA expression analysis using a 30 base pair resolution Escherichia coli genome array
inferredcites →https://doi.org/10.1046/j.1365-2958.2001.02701.xopenalex-snapshot
Emerging views on tmRNA‐mediated protein tagging and ribosome rescue
inferredcites →https://doi.org/10.1073/pnas.032066599openalex-snapshot
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli
inferredcites →https://doi.org/10.1073/pnas.072066399openalex-snapshot
Origin of sphinx , a young chimeric RNA gene in Drosophila melanogaster
inferredcites →https://doi.org/10.1073/pnas.250426397openalex-snapshot
Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization
inferredcites →https://doi.org/10.1073/pnas.97.13.6986openalex-snapshot
Evolution of RNA editing in trypanosome mitochondria
inferredcites →https://doi.org/10.1073/pnas.97.18.9824openalex-snapshot
Switching on and off with RNA
inferredcites →https://doi.org/10.1093/emboj/20.11.2943openalex-snapshot
RNomics: an experimental approach that identifies 201 candidates for novel, small, non‐messenger RNAs in mouse
inferredcites →https://doi.org/10.1093/emboj/20.14.3617openalex-snapshot
Small nucleolar RNA‐guided post‐transcriptional modification of cellular RNAs
inferredcites →https://doi.org/10.1093/nar/25.22.4619openalex-snapshot
Analysis of the yeast genome: identification of new non-coding and small ORF-containing RNAs
inferredcites →https://doi.org/10.1093/nar/27.1.161openalex-snapshot
A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1093/nar/28.1.197openalex-snapshot
Non-coding, mRNA-like RNAs database Y2K
inferredcites →https://doi.org/10.1093/nar/29.19.3928openalex-snapshot
A computational approach to identify genes for functional RNAs in genomic sequences
inferredcites →https://doi.org/10.1101/gad.14.7.777openalex-snapshot
Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation
inferredcites →https://doi.org/10.1101/gad.901001openalex-snapshot
Identification of novel small RNAs using comparative genomics and microarrays
inferredcites →https://doi.org/10.1101/gad.974702openalex-snapshot
miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs
inferredcites →https://doi.org/10.1126/science.1064921openalex-snapshot
Identification of Novel Genes Coding for Small Expressed RNAs
inferredcites →https://doi.org/10.1126/science.1065062openalex-snapshot
An Abundant Class of Tiny RNAs with Probable Regulatory Roles in Caenorhabditis elegans
inferredcites →https://doi.org/10.1126/science.1065329openalex-snapshot
An Extensive Class of Small RNAs in Caenorhabditis elegans
inferredcites →https://doi.org/10.1126/science.1072457openalex-snapshot
Ancient Pathways Programmed by Small RNAs
inferredcites →https://doi.org/10.1126/science.283.5405.1168openalex-snapshot
A Computational Screen for Methylation Guide snoRNAs in Yeast
inferredcites →https://doi.org/10.1126/science.287.5456.1232openalex-snapshot
Crystal Structure of the Ribonucleoprotein Core of the Signal Recognition Particle
inferredcites →https://doi.org/10.1128/mcb.21.19.6507-6514.2001openalex-snapshot
Intergenic Transcription in the Human β-Globin Gene Cluster
inferredcites →https://doi.org/10.1146/annurev.biochem.67.1.153openalex-snapshot
RIBONUCLEASE P: Unity and Diversity in a tRNA Processing Ribozyme
inferredcites →https://doi.org/10.1146/annurev.biochem.70.1.755openalex-snapshot
The Signal Recognition Particle
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model
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Simultaneous Alignment and Structure Prediction of RNAs
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Profiling and Searching for RNA Pseudoknot Structures in Genomes
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Profiling and Searching for RNA Pseudoknot Structures in Genomes
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Structural Alignment of Pseudoknotted RNA
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Spectral Graph Partitioning Analysis of In Vitro Synthesized RNA Structural Folding
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Population Epigenomics: Advancing Understanding of Phenotypic Plasticity, Acclimation, Adaptation and Diseases
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Exploring the Connection Between Synthetic and Natural RNAs in Genomes: A Novel Computational Approach
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Force Spectroscopy with Optical and Magnetic Tweezers
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Aptamers and Their Potential as Recognition Elements for the Detection of Bacteria
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Predicting Non-coding RNA Transcripts
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Generation of cDNA Libraries from RNP-Derived Regulatory Noncoding RNAs
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Noncoding RNAs in Lingzhi Mushroom
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Genetics and Genomics of Abiotic Stress in Rubber Tree (Hevea Brasiliensis)
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Template-Directed Replication of Nucleic Acids Mediated by Viscous Environments
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biRNA: Fast RNA-RNA Binding Sites Prediction
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Genetische Grundlagen der Kanzerogenese
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Proteolytic regulation of stress response pathways in Escherichia coli.
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Computational methods in noncoding RNA research
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A founder mutation for ichthyosis prematurity syndrome restricted to 76 kb by haplotype association
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Law of genome evolution direction: Coding information quantity grows
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Parallel algorithm research on several important open problems in bioinformatics
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Nucleotide distribution variance-based dynamic representation scheme for novel gene prediction
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Prediction of Coding and Non-Coding RNA
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Small RNA-mediated prevention, diagnosis and therapies of cancer
inferred← citeshttps://doi.org/10.1016/b978-0-12-815230-0.00002-9openalex-snapshot
Transcription, Translation, and Regulation of Eukaryotic DNA
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Small non-coding RNAs as epigenetic regulators
inferred← citeshttps://doi.org/10.1016/b978-0-12-824550-7.00008-4openalex-snapshot
Clinical significance of long noncoding RNAs in breast cancer patients
inferred← citeshttps://doi.org/10.1016/b978-0-323-91722-3.00016-6openalex-snapshot
Exploring small RNA in food crops: techniques and approaches
inferred← citeshttps://doi.org/10.1016/b978-0-443-15572-7.00003-6openalex-snapshot
Small noncoding RNAs as epigenetic regulators—updates based on our understanding of other noncoding RNAs
inferred← citeshttps://doi.org/10.1016/b978-012357031-4/50021-2openalex-snapshot
Transcription, Translation, and Regulation of Eukaryotic DNA
inferred← citeshttps://doi.org/10.1016/b978-012492543-4/50031-3openalex-snapshot
The Transcription of Genes
inferred← citeshttps://doi.org/10.1016/b978-012492543-4/50035-0openalex-snapshot
Growth and Development
inferred← citeshttps://doi.org/10.1016/bs.mie.2015.02.002openalex-snapshot
Characterizing RNA Excited States Using NMR Relaxation Dispersion
inferred← citeshttps://doi.org/10.1016/bs.pmbts.2023.02.013openalex-snapshot
Epigenetics in renal diseases
inferred← citeshttps://doi.org/10.1016/j.abb.2004.03.026openalex-snapshot
5′-Heterogeneity of mouse Dda3 transcripts is attributed to differential initiation of transcription and alternative splicing
inferred← citeshttps://doi.org/10.1016/j.aca.2026.346315openalex-snapshot
HOF-101/AgInS2 photogate-engineered organic photoelectrochemical transistor for amplified miRNA-21 biosensing
inferred← citeshttps://doi.org/10.1016/j.bbaexp.2004.12.012openalex-snapshot
Deconstructing PTI-1: PT1-1 is a truncated, but not mutated, form of translation elongation factor 1A1, eEF1A1
inferred← citeshttps://doi.org/10.1016/j.bbaexp.2006.06.004openalex-snapshot
Genomic organization and expression of the human mono-ADP-ribosyltransferase ART3 gene
inferred← citeshttps://doi.org/10.1016/j.bbamcr.2004.09.003openalex-snapshot
Blockade of murine erythroleukemia cell differentiation by hypomethylating agents causes accumulation of discrete small poly(A)− RNAs hybridized to 3′-end flanking sequences of βmajor globin gene
inferred← citeshttps://doi.org/10.1016/j.bbrc.2007.11.038openalex-snapshot
Nezha, a novel active miniature inverted-repeat transposable element in cyanobacteria
inferred← citeshttps://doi.org/10.1016/j.bioeng.2007.02.005openalex-snapshot
An algorithm for searching RNA motifs in genomic sequences
inferred← citeshttps://doi.org/10.1016/j.biotechadv.2024.108393openalex-snapshot
Nucleic acid-responsive smart systems for controlled cargo delivery
inferred← citeshttps://doi.org/10.1016/j.bmc.2008.04.053openalex-snapshot
Study of the base discrimination ability of DNA and 2′-O-methylated RNA oligomers containing 2-thiouracil bases towards complementary RNA or DNA strands and their application to single base mismatch detection
inferred← citeshttps://doi.org/10.1016/j.brainres.2025.150013openalex-snapshot
Transcriptome sequencing reveals key role of ceRNA in regulating inflammation response after intracerebral hemorrhage
inferred← citeshttps://doi.org/10.1016/j.bse.2012.03.012openalex-snapshot
pre-piRNA biogenesis mimics the pathway of miRNA
inferred← citeshttps://doi.org/10.1016/j.chembiol.2004.05.017openalex-snapshot
Engineering a Ligand-Dependent RNA Transcriptional Activator
inferred← citeshttps://doi.org/10.1016/j.dsp.2015.08.007openalex-snapshot
A dynamic representation-based, de novo method for protein-coding region prediction and biological information detection
inferred← citeshttps://doi.org/10.1016/j.envpol.2019.113749openalex-snapshot
CircRNA104250 and lncRNAuc001.dgp.1 promote the PM2.5-induced inflammatory response by co-targeting miR-3607-5p in BEAS-2B cells
inferred← citeshttps://doi.org/10.1016/j.febslet.2004.03.104openalex-snapshot
The steroid receptor RNA activator is the first functional RNA encoding a protein
inferred← citeshttps://doi.org/10.1016/j.gene.2004.03.004openalex-snapshot
Isolation of eight novel Caenorhabditis elegans small RNAs
inferred← citeshttps://doi.org/10.1016/j.gene.2018.02.068openalex-snapshot
Small RNA-mediated regulation in bacteria: A growing palette of diverse mechanisms
inferred← citeshttps://doi.org/10.1016/j.genrep.2018.01.001openalex-snapshot
Identification and functional characterization of bacterial small non-coding RNAs and their target: A review
inferred← citeshttps://doi.org/10.1016/j.ijfoodmicro.2017.07.001openalex-snapshot
RNAseq-based transcriptome comparison of Saccharomyces cerevisiae strains isolated from diverse fermentative environments
inferred← citeshttps://doi.org/10.1016/j.ijmm.2019.04.002openalex-snapshot
A small non-coding RNA facilitates Brucella melitensis intracellular survival by regulating the expression of virulence factor
inferred← citeshttps://doi.org/10.1016/j.jbiotec.2010.10.067openalex-snapshot
ARDesigner: A web-based system for allosteric RNA design
inferred← citeshttps://doi.org/10.1016/j.jfranklin.2003.12.001openalex-snapshot
The role of signal-processing concepts in genomics and proteomics
inferred← citeshttps://doi.org/10.1016/j.jmb.2004.06.054openalex-snapshot
Candidates for Novel RNA Topologies
inferred← citeshttps://doi.org/10.1016/j.jmb.2004.10.006openalex-snapshot
Cycling of the Sm-like Protein Hfq on the DsrA Small Regulatory RNA
inferred← citeshttps://doi.org/10.1016/j.jmb.2005.11.010openalex-snapshot
Three-dimensional Structures of Fibrillar Sm Proteins: Hfq and Other Sm-like Proteins
inferred← citeshttps://doi.org/10.1016/j.jmb.2006.09.004openalex-snapshot
Conserved Small Non-coding RNAs that belong to the σE Regulon: Role in Down-regulation of Outer Membrane Proteins
inferred← citeshttps://doi.org/10.1016/j.jmb.2013.07.008openalex-snapshot
Mapping the Spatial Neighborhood of the Regulatory 6S RNA Bound to Escherichia coli RNA Polymerase Holoenzyme
inferred← citeshttps://doi.org/10.1016/j.jviromet.2007.03.007openalex-snapshot
Development of an oligonucleotide-based DNA microarray for transcriptional analysis of Choristoneura fumiferana nucleopolyhedrovirus (CfMNPV) genes
inferred← citeshttps://doi.org/10.1016/j.lfs.2024.123092openalex-snapshot
Roles of noncoding RNAs in diabetic retinopathy: Mechanisms and therapeutic implications
inferred← citeshttps://doi.org/10.1016/j.mce.2011.10.025openalex-snapshot
The endometrial epigenome and its response to steroid hormones
inferred← citeshttps://doi.org/10.1016/j.mehy.2004.06.024openalex-snapshot
Seven fundamental, unsolved questions in molecular biology
inferred← citeshttps://doi.org/10.1016/j.mib.2007.05.010openalex-snapshot
RNA structure: bioinformatic analysis
inferred← citeshttps://doi.org/10.1016/j.molcel.2024.07.008openalex-snapshot
A ligation-independent sequencing method reveals tRNA-derived RNAs with blocked 3′ termini
inferred← citeshttps://doi.org/10.1016/j.ncrna.2024.06.011openalex-snapshot
The interregulatory circuit between non-coding RNA and apoptotic signaling in diabetic cardiomyopathy
inferred← citeshttps://doi.org/10.1016/j.omtn.2019.11.025openalex-snapshot
H19 Increases IL-17A/IL-23 Releases via Regulating VDR by Interacting with miR675-5p/miR22-5p in Ankylosing Spondylitis
inferred← citeshttps://doi.org/10.1016/j.pan.2017.01.010openalex-snapshot
STX12 lncRNA/miR-148a/SMAD5 participate in the regulation of pancreatic stellate cell activation through a mechanism involving competing endogenous RNA
inferred← citeshttps://doi.org/10.1016/j.plaphy.2021.02.047openalex-snapshot
Dynamic expression of miRNAs and functional analysis of target genes involved in the response to male sterility of the wheat line YS3038
inferred← citeshttps://doi.org/10.1016/j.semcdb.2003.09.013openalex-snapshot
Beyond sense: the role of antisense RNA in controlling Xist expression
inferred← citeshttps://doi.org/10.1016/j.sjbs.2015.11.012openalex-snapshot
Biology and evolution of life science
inferred← citeshttps://doi.org/10.1016/j.tig.2004.12.009openalex-snapshot
Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments
inferred← citeshttps://doi.org/10.1016/j.tplants.2024.09.008openalex-snapshot
Decoding resilience: ecology, regulation, and evolution of biosynthetic gene clusters
inferred← citeshttps://doi.org/10.1016/j.xpro.2026.104795openalex-snapshot
Protocol for identifying glycosylated RNAs using solid-phase chemical conjugation and glycosidase release
inferred← citeshttps://doi.org/10.1016/j.ygeno.2008.04.003openalex-snapshot
NcDNAlign: Plausible multiple alignments of non-protein-coding genomic sequences
inferred← citeshttps://doi.org/10.1016/j.ygeno.2012.10.006openalex-snapshot
Experimental identification of small non-coding regulatory RNAs in the opportunistic human pathogen Burkholderia cenocepacia J2315
inferred← citeshttps://doi.org/10.1016/j.ymeth.2015.02.003openalex-snapshot
Computational analysis of RNA structures with chemical probing data
inferred← citeshttps://doi.org/10.1016/s0006-291x(02)03070-xopenalex-snapshot
Identification of new human coding steroid receptor RNA activator isoforms
inferred← citeshttps://doi.org/10.1016/s0014-2999(03)01480-8openalex-snapshot
Antitumor activity induced by regulatory RNA: possible role of RNA-dependent protein kinase and nuclear factor-κB
inferred← citeshttps://doi.org/10.1016/s0076-6879(03)01024-3openalex-snapshot
Surface Plasmon Resonance Study of RNA–Aminoglycoside Interactions
inferred← citeshttps://doi.org/10.1016/s0378-1119(03)00501-8openalex-snapshot
Identification of 9 novel transcripts and two RGSL genes within the hereditary prostate cancer region (HPC1) at 1q25
inferred← citeshttps://doi.org/10.1016/s0378-1119(03)00718-2openalex-snapshot
Distribution of the MCS4 RNA genes in mycoplasmas belonging to the Mycoplasma mycoides cluster
inferred← citeshttps://doi.org/10.1016/s1074-5521(03)00024-3openalex-snapshot
Encapsulating Streptomycin within a Small 40-mer RNA
inferred← citeshttps://doi.org/10.1016/s1369-5274(03)00027-4openalex-snapshot
Regulatory roles for small RNAs in bacteria
inferred← citeshttps://doi.org/10.1016/s1567-133x(03)00048-6openalex-snapshot
cDNA cloning and spatiotemporal expression during avian embryogenesis of hnRNP A1, a regulatory factor in alternative splicing
inferred← citeshttps://doi.org/10.1016/s1571-0831(07)00205-5openalex-snapshot
Chapter 5 A Point for Thought: Does the Genetic System Include a Meta-Language?
inferred← citeshttps://doi.org/10.1016/s1672-0229(10)60014-9openalex-snapshot
PsRNA: A Computing Engine for the Comparative Identification of Putative Small RNA Locations within Intergenic Regions
inferred← citeshttps://doi.org/10.1016/s1871-0069(05)01003-7openalex-snapshot
Electrochemistry of Nucleic Acids
inferred← citeshttps://doi.org/10.1017/s1751731120000841openalex-snapshot
Review: Long non-coding RNA in livestock
inferred← citeshttps://doi.org/10.1021/acs.analchem.2c04482openalex-snapshot
Ferrocene-Functionalized Covalent Organic Frameworks and Target Catalyzed Hairpin Assembly Strategy for Amplified Electrochemical Determination of MicroRNAs
inferred← citeshttps://doi.org/10.1021/acs.chemrev.6c00100openalex-snapshot
Computational Platforms for Membrane-Active Peptide Therapeutic Design
inferred← citeshttps://doi.org/10.1021/acs.jcim.5b00593openalex-snapshot
Can Holo NMR Chemical Shifts be Directly Used to Resolve RNA–Ligand Poses?
inferred← citeshttps://doi.org/10.1021/acsami.3c01242openalex-snapshot
Spatiotemporal Monitoring of Subcellular mRNAs In Situ via Polyadenine-Mediated Dual-Color Sticky Flares
inferred← citeshttps://doi.org/10.1021/acssynbio.7b00185openalex-snapshot
Rational Modular RNA Engineering Based on In Vivo Profiling of Structural Accessibility
inferred← citeshttps://doi.org/10.1021/bi060455mopenalex-snapshot
Efficient Substrate Cleavage Catalyzed by Hammerhead Ribozymes Derivatized with Selenium for X-Ray Crystallography
inferred← citeshttps://doi.org/10.1021/bi200463popenalex-snapshot
Isoenergetic Microarrays To Study the Structure and Interactions of DsrA and OxyS RNAs in Two- and Three-Component Complexes
inferred← citeshttps://doi.org/10.1021/bi700410gopenalex-snapshot
Mutational Analysis of the Purine Riboswitch Aptamer Domain
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