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Host-to-Parasite Gene Transfer in Flowering Plants: Phylogenetic Evidence from Malpighiales

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/j.1537-2197.1988.tb08828.xopenalex-snapshot

POLLINATION OF RAFFLESIA (RAFFLESIACEAE)

inferredcites →https://doi.org/10.1007/bf00178250openalex-snapshot

High rates of nucleotide substitution in nuclear small-subunit (18S) rDNA from holoparasitic flowering plants

inferredcites →https://doi.org/10.1038/46536openalex-snapshot

The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes

inferredcites →https://doi.org/10.1038/nature01743openalex-snapshot

Widespread horizontal transfer of mitochondrial genes in flowering plants

inferredcites →https://doi.org/10.1046/j.1095-8339.2002.00028.xopenalex-snapshot

Systematics of Vitaceae from the viewpoint of plastid rbcL DNA sequence data

inferredcites →https://doi.org/10.1046/j.1095-8339.2003.t01-1-00158.xopenalex-snapshot

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II

inferredcites →https://doi.org/10.1073/pnas.0305562101openalex-snapshot

Mitochondrial DNA sequences reveal the photosynthetic relatives of Rafflesia , the world's largest flower

inferredcites →https://doi.org/10.1073/pnas.1833775100openalex-snapshot

Horizontal gene transfer from flowering plants to Gnetum

inferredcites →https://doi.org/10.1525/9780520417793openalex-snapshot

The Biology of Parasitic Flowering Plants

inferredcites →https://doi.org/10.2307/1222465openalex-snapshot

An Integrated System of Classification of Flowering Plants

inferredcites →https://doi.org/10.2307/2258548openalex-snapshot

The Biology of Parasitic Flowering Plants.

inferredcites →https://doi.org/10.3732/ajb.91.2.262openalex-snapshot

Elatinaceae are sister to Malpighiaceae; Peridiscaceae belong to Saxifragales

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Unravelling the species diversity, phylogeny and biogeography of the mycoheterotrophic Voyrieae (Gentianaceae) and the description of a new species

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Horizontal Gene Transfer

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The danger zone: The joint trap of incomplete lineage sorting and long‐branch attraction in resolving the Gondwanan origin of Rafflesiaceae and Apodanthaceae

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Tuning a ménage à trois: Co‐evolution and co‐adaptation of nuclear and organellar genomes in plants

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Engineering host resistance against parasitic weeds with RNA interference

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RNA translocation between parasitic plants and their hosts

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The first phylogenetic analysis of Tetrastigma (Miq.) Planch., the host of Rafflesiaceae

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Theoretical Approaches to the Dynamics of Transposable Elements in Genomes, Populations, and Species

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Mitochondrial Genome Evolution in the Plant Lineage

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Class Magnoliopsida (Dicotyledons)

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Alien Gene Transfer in Crop Plants: An Introduction

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Role of Horizontal Gene Transfer in Evolution of the Plant Genome

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Horizontal Transfer of Transposons as Genomic Fossils of Host-Parasite Interactions

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Vitaceae

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Die Zelle als gengesteuertes System

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Organellar Genomes of Flowering Plants

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The complete nucleotide sequence of the cassava (Manihot esculenta) chloroplast genome and the evolution of atpF in Malpighiales: RNA editing and multiple losses of a group II intron

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Phylogenetics of Quiinaceae (Malpighiales): evidence from trnL-trnF sequence data and morphology

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Phylogeny of the eudicot order Malpighiales: analysis of a recalcitrant clade with sequences of the petD group II intron

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Phylogenetic analyses of Malpighiales using plastid and nuclear DNA sequences, with particular reference to the embryology of Euphorbiaceae sens. str.

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Evolutionary origin of a plant mitochondrial group II intron from a reverse transcriptase/maturase-encoding ancestor

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Molecular phylogenetic analysis of Euphorbiaceae sensu stricto based on plastid and nuclear DNA sequences and ovule and seed character evolution

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Bud development, flower phenology and life history of holoparasitic Rafflesia cantleyi

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The series, the network, and the tree: changing metaphors of order in nature

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Testing for treeness: lateral gene transfer, phylogenetic inference, and model selection

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A fragment of chloroplast DNA was transferred horizontally, probably from non-eudicots, to mitochondrial genome of Phaseolus

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Multichromosomal structure and foreign tracts in the Ombrophytum subterraneum (Balanophoraceae) mitochondrial genome

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Quercus pubescens and its hemiparasite Loranthus europaeus: nutrient dynamics of leaves and twigs

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The Role of Horizontal Transfer in Shaping the Plant Mitochondrial Genome

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Molecular phylogeny of tropical forest plants

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Darwin's Pangenesis and the Lamarckian Inheritance of Acquired Characters

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Diversity and evolution of Pong-like elements in Bambusoideae subfamily

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Floral Evolution: Dramatic Size Change Was Recent and Rapid in the World's Largest Flowers

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Adaptive Evolution of C4 Photosynthesis through Recurrent Lateral Gene Transfer

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Population-Specific Selection on Standing Variation Generated by Lateral Gene Transfers in a Grass

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Deeply Altered Genome Architecture in the Endoparasitic Flowering Plant Sapria himalayana Griff. (Rafflesiaceae)

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Application of food and feed safety assessment principles to evaluate transgenic approaches to gene modulation in crops

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Horizontal mtDNA transfer between cells is common during mouse development

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The ornithine decarboxylase gene of Trypanosoma brucei: Evidence for horizontal gene transfer from a vertebrate source

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Linear plasmids in plant mitochondria: Peaceful coexistences or malicious invasions?

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Mitochondria in parasitic plants

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En route to a genome-based classification of Archaea and Bacteria?

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The give-and-take of DNA: horizontal gene transfer in plants

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The evolution of parasitism in plants

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Horizontal gene transfer of a plastid gene in the non-photosynthetic flowering plants Orobanche and Phelipanche (Orobanchaceae)

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Origin and timing of the horizontal transfer of a PgiC gene from Poa to Festuca ovina

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Evolutionary analysis revealed the horizontal transfer of the Cyt b gene from Fungi to Chromista

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Back together: Over 1000 single-copy nuclear loci and reproductive features support the holoendoparasitic Apodanthaceae and Rafflesiaceae as sister lineages in the order Malpighiales

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Gene transfer from parasitic to host plants

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A role for host–parasite interactions in the horizontal transfer of transposons across phyla

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Give and take

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Horizontal gene transfer in eukaryotic evolution

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Like father like son

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Origin of the plant Tm-1-like gene via two independent horizontal transfer events and one gene fusion event

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Effect of soil nursery mixtures and hormone on the growth of Tetrastigma rafflesiae (Miq.) planch

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An end to all things? — plants and their names

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Massive horizontal transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella

inferred← citeshttps://doi.org/10.1073/pnas.1114076109openalex-snapshot

Horizontal transfer of chloroplast genomes between plant species

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Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns

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Cell-to-cell movement of mitochondria in plants

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Horizontal gene transfer is more frequent with increased heterotrophy and contributes to parasite adaptation

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Lateral transfers of large DNA fragments spread functional genes among grasses

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Contribution of plant–bacteria interactions to horizontal gene transfer in plants

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Making next-generation sequencing work for you: approaches and practical considerations for marker development and phylogenetics

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Explosive Radiation of Malpighiales Supports a Mid‐Cretaceous Origin of Modern Tropical Rain Forests

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.001.0001openalex-snapshot

People, Plants and Genes

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.002.0003openalex-snapshot

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.002.0004openalex-snapshot

Dedication

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.002.0006openalex-snapshot

List of figures

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.002.0007openalex-snapshot

List of tables

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List of text boxes

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Preface

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.002.0010openalex-snapshot

Nomenclature and terminology

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.003.0001openalex-snapshot

Early human societies and their plants

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.003.0002openalex-snapshot

Plant management and agriculture

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.003.0003openalex-snapshot

How some people became farmers

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.003.0004openalex-snapshot

Plant genomes

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.003.0005openalex-snapshot

Fluid genomes, uncertain species, and the genetics of crop domestication

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.003.0006openalex-snapshot

The domestication of cereal crops

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.003.0007openalex-snapshot

The domestication of non-cereal crops

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.003.0008openalex-snapshot

People and the emergence of crops

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.003.0009openalex-snapshot

Agriculture: a mixed blessing

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.003.0010openalex-snapshot

Evolution of agrourban cultures: I The Near East

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.003.0011openalex-snapshot

Evolution of agrourban cultures: II South and east Asia

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.003.0012openalex-snapshot

Evolution of agrourban cultures: III Africa, Europe, and the Americas

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.003.0013openalex-snapshot

Crop management in the classical and medieval periods

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.003.0014openalex-snapshot

Agricultural improvement and the rise of crop breeding

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.003.0015openalex-snapshot

Imperial botany and the early scientific breeders

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.003.0016openalex-snapshot

Agricultural improvement in modern times

inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199207145.003.0017openalex-snapshot

The future of agriculture and humanity

inferred← citeshttps://doi.org/10.1093/aob/mcu114openalex-snapshot

Holoparasitic Rafflesiaceae possess the most reduced endophytes and yet give rise to the world's largest flowers

inferred← citeshttps://doi.org/10.1093/bfgp/elv001openalex-snapshot

Transcriptomics exposes the uniqueness of parasitic plants

inferred← citeshttps://doi.org/10.1093/evolut/qpaf201openalex-snapshot

Reconsidering cytonuclear discordance in the genomic age

inferred← citeshttps://doi.org/10.1093/jhered/esu052openalex-snapshot

Direct Visualization of Horizontal Gene Transfer in Cotton Plants

inferred← citeshttps://doi.org/10.1093/jxb/erl148openalex-snapshot

Horizontal gene transfer in plants

inferred← citeshttps://doi.org/10.1093/molbev/msaf082openalex-snapshot

Unequally Abundant Chromosomes and Unusual Collections of Transferred Sequences Characterize Mitochondrial Genomes of Gastrodia (Orchidaceae), One of the Largest Mycoheterotrophic Plant Genera

inferred← citeshttps://doi.org/10.1093/molbev/msj068openalex-snapshot

Comprehensive Multigene Phylogenies of Excavate Protists Reveal the Evolutionary Positions of “Primitive” Eukaryotes

inferred← citeshttps://doi.org/10.1093/molbev/msm101openalex-snapshot

Plastid Genome Sequence of the Cryptophyte Alga Rhodomonas salina CCMP1319: Lateral Transfer of Putative DNA Replication Machinery and a Test of Chromist Plastid Phylogeny

inferred← citeshttps://doi.org/10.1093/molbev/msn129openalex-snapshot

Frequent, Phylogenetically Local Horizontal Transfer of the cox1 Group I Intron in Flowering Plant Mitochondria

inferred← citeshttps://doi.org/10.1093/molbev/mst206openalex-snapshot

Plant Expansins in Bacteria and Fungi: Evolution by Horizontal Gene Transfer and Independent Domain Fusion

inferred← citeshttps://doi.org/10.1093/molbev/msu051openalex-snapshot

Possible Loss of the Chloroplast Genome in the Parasitic Flowering Plant Rafflesia lagascae (Rafflesiaceae)

inferred← citeshttps://doi.org/10.1093/molbev/msu324openalex-snapshot

Horizontal Gene Transfer of Chlamydial-Like tRNA Genes into Early Vascular Plant Mitochondria

inferred← citeshttps://doi.org/10.1093/molbev/msv127openalex-snapshot

Extensive Horizontal Transfer and Homologous Recombination Generate Highly Chimeric Mitochondrial Genomes in Yeast

inferred← citeshttps://doi.org/10.1093/molbev/msz198openalex-snapshot

Ancient Mitochondrial Gene Transfer between Fungi and the Orchids

inferred← citeshttps://doi.org/10.1093/pcp/pcaf131openalex-snapshot

Systemic organellar genome reconfiguration along the parasitic continuum in the broomrape family (Orobanchaceae)

inferred← citeshttps://doi.org/10.1093/plcell/koaf195openalex-snapshot

Mechanisms, detection, and impact of horizontal gene transfer in plant functional evolution

inferred← citeshttps://doi.org/10.1094/mpmi-10-11-0260openalex-snapshot

Role of the Sucrose Synthase Encoding PrSus1 Gene in the Development of the Parasitic Plant Phelipanche ramosa L. (Pomel)

inferred← citeshttps://doi.org/10.1094/phyto-99-11-1321openalex-snapshot

Broomrape Can Acquire Viruses from Its Hosts

inferred← citeshttps://doi.org/10.1098/rspb.2005.3226openalex-snapshot

Gene transfer from a parasitic flowering plant to a fern

inferred← citeshttps://doi.org/10.1099/mic.0.27549-0openalex-snapshot

A question concerning the identity of Streptomyces sp. MSU-2110

inferred← citeshttps://doi.org/10.1101/2022.12.23.521604openalex-snapshot

New mitochondrial genomes of leptosporangiate ferns allow modeling the mitogenomic inflation syndrome across all land plant lineages

inferred← citeshttps://doi.org/10.1101/2024.12.09.626742openalex-snapshot

Diverging repeatomes in holoparasitic Hydnoraceae uncover a playground of genome evolution

inferred← citeshttps://doi.org/10.1101/2025.06.25.661533openalex-snapshot

Circle-Mediated HGT shapes the multichromosomal mitochondrial genome of the endoparasite Mitrastemon yamamotoi

inferred← citeshttps://doi.org/10.1101/2025.11.14.688545openalex-snapshot

A structural solution to functional HGT: Gene chimerism bypasses mitochondrial expression barriers in parasitic plants

inferred← citeshttps://doi.org/10.1101/694950openalex-snapshot

Exploring the phylogeny of rosids with a five-locus supermatrix from GenBank

inferred← citeshttps://doi.org/10.1104/pp.17.01025openalex-snapshot

Fission and Fusion of Plant Mitochondria, and Genome Maintenance

inferred← citeshttps://doi.org/10.1105/tpc.114.123620openalex-snapshot

Evolutionary Origins of a Bioactive Peptide Buried within Preproalbumin

inferred← citeshttps://doi.org/10.1111/bij.12160openalex-snapshot

Circulating nucleic acids: possible inherited effects

inferred← citeshttps://doi.org/10.1111/bij.12872openalex-snapshot

Speciation through the looking-glass

inferred← citeshttps://doi.org/10.1111/boj.12385openalex-snapshot

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

inferred← citeshttps://doi.org/10.1111/j.1095-8339.2007.00694.xopenalex-snapshot

Why does some pollen lack apertures? A review of inaperturate pollen in eudicots

inferred← citeshttps://doi.org/10.1111/j.1095-8339.2009.00996.xopenalex-snapshot

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

inferred← citeshttps://doi.org/10.1111/j.1095-8339.2011.01162.xopenalex-snapshot

Comparative floral structure and systematics in Rhizophoraceae, Erythroxylaceae and the potentially related Ctenolophonaceae, Linaceae, Irvingiaceae and Caryocaraceae (Malpighiales)

inferred← citeshttps://doi.org/10.1111/j.1095-8339.2012.01258.xopenalex-snapshot

Molecular phylogenetic analysis of Podostemaceae: implications for taxonomy of major groups

inferred← citeshttps://doi.org/10.1111/j.1095-8339.2012.01289.xopenalex-snapshot

Origin and evolution of Chrysobalanaceae: insights into the evolution of plants in the Neotropics

inferred← citeshttps://doi.org/10.1111/j.1096-0031.2008.00241.xopenalex-snapshot

Bias and conflict in phylogenetic inference of myco‐heterotrophic plants: a case study in Thismiaceae

inferred← citeshttps://doi.org/10.1111/j.1364-3703.2010.00702.xopenalex-snapshot

Invertases involved in the development of the parasitic plant Phelipanche ramosa : characterization of the dominant soluble acid isoform, PrSAI1

inferred← citeshttps://doi.org/10.1111/j.1365-313x.2008.03613.xopenalex-snapshot

Trans‐specific gene silencing between host and parasitic plants

inferred← citeshttps://doi.org/10.1111/j.1366-9516.2005.00184.xopenalex-snapshot

Pieces in the plant puzzle

inferred← citeshttps://doi.org/10.1111/j.1399-3054.2006.00768.xopenalex-snapshot

Organization and variation of angiosperm mitochondrial genome

inferred← citeshttps://doi.org/10.1111/j.1467-7652.2009.00418.xopenalex-snapshot

Gene silencing of mannose 6‐phosphate reductase in the parasitic weed Orobanche aegyptiaca through the production of homologous dsRNA sequences in the host plant

inferred← citeshttps://doi.org/10.1111/j.1467-8748.2009.01668.xopenalex-snapshot

PARASITES, THEIR RELATIONSHIPS AND THE DISINTEGRATION OF SCROPHULARIACEAESENSU LATO

inferred← citeshttps://doi.org/10.1111/j.1759-6831.2009.00035.xopenalex-snapshot

Phylogenetic placement of Cynomorium in Rosales inferred from sequences of the inverted repeat region of the chloroplast genome

inferred← citeshttps://doi.org/10.1111/j.1759-6831.2010.00097.xopenalex-snapshot

Angiosperm phylogeny inferred from sequences of four mitochondrial genes

inferred← citeshttps://doi.org/10.1111/jse.12260openalex-snapshot

The big, the bad, and the beautiful: Biology of the world's largest flowers

inferred← citeshttps://doi.org/10.1111/jse.12303openalex-snapshot

Structure and ontogeny of successive cambia in Tetrastigma (Vitaceae), the host plants of Rafflesiaceae

inferred← citeshttps://doi.org/10.1111/jse.12310openalex-snapshot

Genome size variation and evolution in the grape family Vitaceae

inferred← citeshttps://doi.org/10.1111/jse.12427openalex-snapshot

A new phylogenetic tribal classification of the grape family (Vitaceae)

inferred← citeshttps://doi.org/10.1111/jse.12444openalex-snapshot

Testing reticulate evolution of four Vitis species from East Asia using restriction‐site associated DNA sequencing

inferred← citeshttps://doi.org/10.1111/nph.12919openalex-snapshot

Next‐generation sequencing data suggest that certain nonphotosynthetic green plants have lost their plastid genomes

inferred← citeshttps://doi.org/10.1111/nph.13467openalex-snapshot

Dynamic evolution of Geranium mitochondrial genomes through multiple horizontal and intracellular gene transfers

inferred← citeshttps://doi.org/10.1111/nph.16926openalex-snapshot

Horizontal gene transfers dominate the functional mitochondrial gene space of a holoparasitic plant

inferred← citeshttps://doi.org/10.1111/nph.70280openalex-snapshot

Diverging repeatomes in holoparasitic Hydnoraceae uncover a playground of genome evolution

inferred← citeshttps://doi.org/10.1111/tpj.70889openalex-snapshot

Circle‐mediated HGT shapes the multichromosomal mitochondrial genome of the endoparasitic plant Mitrastemon yamamotoi

inferred← citeshttps://doi.org/10.1111/wre.12025openalex-snapshot

Trafficking of molecules between parasitic plants and their hosts

inferred← citeshttps://doi.org/10.1126/sciadv.abd8215openalex-snapshot

Horizontal genome transfer by cell-to-cell travel of whole organelles

inferred← citeshttps://doi.org/10.1126/science.1135260openalex-snapshot

Floral Gigantism in Rafflesiaceae

inferred← citeshttps://doi.org/10.1126/science.1246275openalex-snapshot

Horizontal Transfer of Entire Genomes via Mitochondrial Fusion in the Angiosperm Amborella

inferred← citeshttps://doi.org/10.1134/s2079059712020104openalex-snapshot

Characterization of variability of the gene Nad1 intron in representatives of Vicia L. genus (Fabaceae Lindl family)

inferred← citeshttps://doi.org/10.1139/b08-033openalex-snapshot

Reticulate evolution in the parasitic genusCuscuta(Convolvulaceae): over and over againThis paper is one of a selection of papers published in the Special Issue on Systematics Research.

inferred← citeshttps://doi.org/10.1139/cjb-2020-0025openalex-snapshot

Comparative morphology and ontogenetic patterns of Bdallophytum species (Cytinaceae, Malvales): insight into the biology of an endoparasitic genus

inferred← citeshttps://doi.org/10.1146/annurev-genet-120215-035329openalex-snapshot

Witnessing Genome Evolution: Experimental Reconstruction of Endosymbiotic and Horizontal Gene Transfer

inferred← citeshttps://doi.org/10.1155/2012/679045openalex-snapshot

Horizontal Transfer and the Evolution of Host-Pathogen Interactions

inferred← citeshttps://doi.org/10.1186/1471-2148-10-219openalex-snapshot

The worldwide holoparasitic Apodanthaceae confidently placed in the Cucurbitales by nuclear and mitochondrial gene trees

inferred← citeshttps://doi.org/10.1186/1471-2148-11-277openalex-snapshot

Multiple recent horizontal transfers of the cox1intron in Solanaceae and extended co-conversion of flanking exons

inferred← citeshttps://doi.org/10.1186/1471-2148-13-48openalex-snapshot

Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species

inferred← citeshttps://doi.org/10.1186/1471-2148-4-40openalex-snapshot

Phylogenetic inference in Rafflesiales: the influence of rate heterogeneity and horizontal gene transfer

inferred← citeshttps://doi.org/10.1186/1471-2148-5-38openalex-snapshot

Discovery of the photosynthetic relatives of the "Maltese mushroom" Cynomorium

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