On the public citation graph

Use of 16S rRNA and rpoB Genes as Molecular Markers for Microbial Ecology Studies

0 signed · 613 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00227-005-1614-9openalex-snapshot
Identification of the cellular site of polychlorinated peptide biosynthesis in the marine sponge Dysidea (Lamellodysidea) herbacea and symbiotic cyanobacterium Oscillatoria spongeliae by CARD-FISH analysis
inferredcites →https://doi.org/10.1016/0022-5193(65)90083-4openalex-snapshot
Molecules as documents of evolutionary history
inferredcites →https://doi.org/10.1016/j.femsec.2004.04.011openalex-snapshot
Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE
inferredcites →https://doi.org/10.1016/j.fm.2003.10.002openalex-snapshot
The rpoB gene as a target for PCR-DGGE analysis to follow lactic acid bacterial population dynamics during food fermentations
inferredcites →https://doi.org/10.1016/j.fm.2005.01.019openalex-snapshot
Lactic acid bacteria evolution during winemaking: Use of rpoB gene as a target for PCR-DGGE analysis
inferredcites →https://doi.org/10.1016/j.mib.2004.04.015openalex-snapshot
Molecular microbial ecology: land of the one-eyed king
inferredcites →https://doi.org/10.1016/j.soilbio.2004.03.011openalex-snapshot
Impact of DNA extraction method on bacterial community composition measured by denaturing gradient gel electrophoresis
inferredcites →https://doi.org/10.1016/s0076-6879(05)97021-3openalex-snapshot
Simultaneous Fluorescence In Situ Hybridization of mRNA and rRNA for the Detection of Gene Expression in Environmental Microbes
inferredcites →https://doi.org/10.1016/s0167-7012(02)00026-xopenalex-snapshot
Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria
inferredcites →https://doi.org/10.1016/s0167-7012(03)00140-4openalex-snapshot
Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: a cautionary tale
inferredcites →https://doi.org/10.1016/s0168-6496(00)00102-1openalex-snapshot
Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: changes in the genetic diversity of bacterial populations
inferredcites →https://doi.org/10.1038/345060a0openalex-snapshot
Genetic diversity in Sargasso Sea bacterioplankton
inferredcites →https://doi.org/10.1038/nature02649openalex-snapshot
Fine-scale phylogenetic architecture of a complex bacterial community
inferredcites →https://doi.org/10.1038/nrmicro1236openalex-snapshot
Re-evaluating prokaryotic species
inferredcites →https://doi.org/10.1038/sj.jim.2900546openalex-snapshot
Redefining relativity: quantitative PCR at low template concentrations for industrial and environmental microbiology
inferredcites →https://doi.org/10.1046/j.1472-765x.2002.01183.xopenalex-snapshot
Use of rpoB and 16S rRNA genes to analyse bacterial diversity of a tropical soil using PCR and DGGE
inferredcites →https://doi.org/10.1073/pnas.180094797openalex-snapshot
Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics
inferredcites →https://doi.org/10.1073/pnas.74.11.5088openalex-snapshot
Phylogenetic structure of the prokaryotic domain: The primary kingdoms
inferredcites →https://doi.org/10.1093/bioinformatics/14.9.817openalex-snapshot
MODELTEST: testing the model of DNA substitution.
inferredcites →https://doi.org/10.1093/molbev/msh248openalex-snapshot
Evolution of the RNA Polymerase B' Subunit Gene (rpoB') in Halobacteriales: a Complementary Molecular Marker to the SSU rRNA Gene
inferredcites →https://doi.org/10.1093/nar/21.22.5264openalex-snapshot
MUST, a computer package of Management Utilities for Sequences and Trees
inferredcites →https://doi.org/10.1093/nar/22.22.4673openalex-snapshot
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
inferredcites →https://doi.org/10.1093/nar/29.1.181openalex-snapshot
rrndb: the Ribosomal RNA Operon Copy Number Database
inferredcites →https://doi.org/10.1111/j.1462-2920.2004.00617.xopenalex-snapshot
Identification and phylogenetic sorting of bacterial lineages with universally conserved genes and proteins
inferredcites →https://doi.org/10.1111/j.1462-2920.2005.00793.xopenalex-snapshot
Diversity of bacteria associated with the coral Pocillopora damicornis from the Great Barrier Reef
inferredcites →https://doi.org/10.1111/j.1574-6941.2005.00018.xopenalex-snapshot
PCR-DGGE method to assess the diversity of BTEX mono-oxygenase genes at contaminated sites
inferredcites →https://doi.org/10.1126/science.1103289openalex-snapshot
Frequent Recombination in a Saltern Population of Halorubrum
inferredcites →https://doi.org/10.1126/science.1106028openalex-snapshot
Genotypic Diversity Within a Natural Coastal Bacterioplankton Population
inferredcites →https://doi.org/10.1126/science.3672135openalex-snapshot
Structurally Distinct, Stage-Specific Ribosomes Occur in Plasmodium
inferredcites →https://doi.org/10.1128/aem.61.6.2203-2210.1995openalex-snapshot
Genetic diversity of Desulfovibrio spp. in environmental samples analyzed by denaturing gradient gel electrophoresis of [NiFe] hydrogenase gene fragments
inferredcites →https://doi.org/10.1128/aem.64.10.3724-3730.1998openalex-snapshot
Bias in Template-to-Product Ratios in Multitemplate PCR
inferredcites →https://doi.org/10.1128/aem.66.4.1328-1333.2000openalex-snapshot
rRNA Operon Copy Number Reflects Ecological Strategies of Bacteria
inferredcites →https://doi.org/10.1128/aem.66.8.3376-3380.2000openalex-snapshot
rpoB -Based Microbial Community Analysis Avoids Limitations Inherent in 16S rRNA Gene Intraspecies Heterogeneity
inferredcites →https://doi.org/10.1128/aem.67.7.2922-2926.2001openalex-snapshot
Photosynthetic and Phylogenetic Primers for Detection of Anoxygenic Phototrophs in Natural Environments
inferredcites →https://doi.org/10.1128/aem.69.3.1748-1758.2003openalex-snapshot
In Situ Accessibility of Small-Subunit rRNA of Members of the Domains Bacteria , Archaea , and Eucarya to Cy3-Labeled Oligonucleotide Probes
inferredcites →https://doi.org/10.1128/aem.69.5.2555-2562.2003openalex-snapshot
Formation of Pseudo-Terminal Restriction Fragments, a PCR-Related Bias Affecting Terminal Restriction Fragment Length Polymorphism Analysis of Microbial Community Structure
inferredcites →https://doi.org/10.1128/aem.69.8.4935-4941.2003openalex-snapshot
Is the In Situ Accessibility of the 16S rRNA of Escherichia coli for Cy3-Labeled Oligonucleotide Probes Predicted by a Three-Dimensional Structure Model of the 30S Ribosomal Subunit?
inferredcites →https://doi.org/10.1128/aem.71.9.5107-5115.2005openalex-snapshot
Phylogeny and Molecular Identification of Vibrios on the Basis of Multilocus Sequence Analysis
inferredcites →https://doi.org/10.1128/jb.171.11.6234-6242.1989openalex-snapshot
Autogenous regulation of the RNA polymerase beta subunit of Escherichia coli occurs at the translational level in vivo
inferredcites →https://doi.org/10.1128/jb.186.12.3980-3990.2004openalex-snapshot
Intragenomic Heterogeneity and Intergenomic Recombination among Haloarchaeal rRNA Genes
inferredcites →https://doi.org/10.1128/jb.186.9.2629-2635.2004openalex-snapshot
Divergence and Redundancy of 16S rRNA Sequences in Genomes with Multiple rrn Operons
inferredcites →https://doi.org/10.1128/mr.51.2.221-271.1987openalex-snapshot
Bacterial evolution
inferredcites →https://doi.org/10.1186/1471-2105-3-2openalex-snapshot
The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
inferredcites →https://doi.org/10.2144/03344rr01openalex-snapshot
Understanding Bias in Microbial Community Analysis Techniques due to rrn Operon Copy Number Heterogeneity

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/phytotaxa.365.1.1zenodo-depositor-declared
Revision of the Synechococcales (Cyanobacteria) through recognition of four families including Oculatellaceae fam. nov. and Trichocoleaceae fam. nov. and six new genera containing 14 species
inferred← citeshttps://doi.org/10.5252/cryptogamie-algologie2023v44a3zenodo-depositor-declared
Structural and Functional Genes, and Highly Repetitive Sequences Commonly Used in the Phylogeny and Species Concept of the Phylum Cyanobacteria
inferred← citeshttps://doi.org/10.1002/9781118010549.ch18openalex-snapshot
Functional Intestinal Metagenomics
inferred← citeshttps://doi.org/10.1002/9781119097426.ch4openalex-snapshot
Characterization of Electrode‐Associated Biomass And Microbial Communities
inferred← citeshttps://doi.org/10.1002/9781119332169.ch4openalex-snapshot
Taxonomic Identification of Cyanobacteria by a Polyphasic Approach
inferred← citeshttps://doi.org/10.1002/ecs2.2090openalex-snapshot
Estimating taxon‐specific population dynamics in diverse microbial communities
inferred← citeshttps://doi.org/10.1002/ieam.1580openalex-snapshot
The use of microbial gene abundance in the development of fuel remediation guidelines in polar soils
inferred← citeshttps://doi.org/10.1002/jobm.201000117openalex-snapshot
Novel application of the MSSCP method in biodiversity studies
inferred← citeshttps://doi.org/10.1002/mbo3.1333openalex-snapshot
The emergence of the tetrathionate reductase operon in the Escherichia coli/Shigella pan‐genome
inferred← citeshttps://doi.org/10.1002/ps.71319openalex-snapshot
Strain‐specific monitoring of Bacillus amyloliquefaciens AH2 in strawberry fields using a specific molecular marker
inferred← citeshttps://doi.org/10.1007/10_2016_49openalex-snapshot
Molecular Phylogenetics: Concepts for a Newcomer
inferred← citeshttps://doi.org/10.1007/978-1-0716-1681-9_15openalex-snapshot
Helminth Microbiota Profiling Using Bacterial 16S rRNA Gene Amplicon Sequencing: From Sampling to Sequence Data Mining
inferred← citeshttps://doi.org/10.1007/978-1-4614-6418-1_733-3openalex-snapshot
Lateral Gene Transfer and Microbial Diversity
inferred← citeshttps://doi.org/10.1007/978-1-4614-6418-1_787-1openalex-snapshot
Next-Generation Sequencing on Metagenomic Data: Assembly and Binning
inferred← citeshttps://doi.org/10.1007/978-1-4614-6418-1_89-5openalex-snapshot
Computational Tools for Taxonomic Assignment
inferred← citeshttps://doi.org/10.1007/978-1-60761-439-5_3openalex-snapshot
Addressing PCR Biases in Environmental Microbiology Studies
inferred← citeshttps://doi.org/10.1007/978-3-031-01650-9openalex-snapshot
Computational Genomic Signatures
inferred← citeshttps://doi.org/10.1007/978-3-031-31212-0_7openalex-snapshot
Sequenzbasierte Klassifizierung und Identifizierung von Prokaryoten
inferred← citeshttps://doi.org/10.1007/978-3-031-45293-2_7openalex-snapshot
Sequence-Based Classification and Identification
inferred← citeshttps://doi.org/10.1007/978-3-031-65257-8_7openalex-snapshot
Sequenzbasierte Klassifikation und Identifikation
inferred← citeshttps://doi.org/10.1007/978-3-319-11038-7_5openalex-snapshot
Microbiological Diversity of Peri-Implantitis Biofilms
inferred← citeshttps://doi.org/10.1007/978-3-319-39961-4_16openalex-snapshot
Anaerobic Microbial Communities and Processes Involved in the Methane Cycle in Freshwater Lakes-a Focus on Lake Pavin
inferred← citeshttps://doi.org/10.1007/978-3-319-68867-1_5openalex-snapshot
Microbial Socialization Highlights the AMF Effect
inferred← citeshttps://doi.org/10.1007/978-3-319-96971-8_10openalex-snapshot
Biodiversity Conservation of Phages and Microbial Populations
inferred← citeshttps://doi.org/10.1007/978-3-319-99280-8_7openalex-snapshot
Sequence-Based Classification and Identification of Prokaryotes
inferred← citeshttps://doi.org/10.1007/978-3-642-12340-5_18openalex-snapshot
Trends in Rhizobial Evolution and Some Taxonomic Remarks
inferred← citeshttps://doi.org/10.1007/978-981-10-5050-3_2openalex-snapshot
Uncultivated Lineages and Host–Microbe Interaction in Saline Environment
inferred← citeshttps://doi.org/10.1007/978-981-13-1562-6_5openalex-snapshot
Metagenomics: Focusing on the Haystack
inferred← citeshttps://doi.org/10.1007/978-981-13-6480-8_23openalex-snapshot
Molecular Microbial Biodiversity Assessment in the Mycorrhizosphere
inferred← citeshttps://doi.org/10.1007/978-981-97-7123-3_4openalex-snapshot
Metagenomics and Microbiome Analysis
inferred← citeshttps://doi.org/10.1007/s00217-008-0958-zopenalex-snapshot
Multiplex PCR–capillary electrophoresis–SSCP used to identify foodborne pathogens
inferred← citeshttps://doi.org/10.1007/s00217-016-2720-2openalex-snapshot
Lactic acid bacteria communities in must, alcoholic and malolactic Tempranillo wine fermentations, by culture-dependent and culture-independent methods
inferred← citeshttps://doi.org/10.1007/s00248-007-9304-4openalex-snapshot
Morphological and Phylogenetic Analysis of Anabaenopsis abijatae and Anabaenopsis elenkinii (Nostocales, Cyanobacteria) from Tropical Inland Water Bodies
inferred← citeshttps://doi.org/10.1007/s00248-007-9310-6openalex-snapshot
Leaf-Associated Bacterial and Fungal Taxa Shifts in Response to Larvae of the Tree Hole Mosquito, Ochlerotatus triseriatus
inferred← citeshttps://doi.org/10.1007/s00248-008-9445-0openalex-snapshot
Molecular Studies on the Microbial Diversity Associated with Mining-Impacted Coeur d’Alene River Sediments
inferred← citeshttps://doi.org/10.1007/s00248-010-9799-yopenalex-snapshot
Male Killing and Incomplete Inheritance of a Novel Spiroplasma in the Moth Ostrinia zaguliaevi
inferred← citeshttps://doi.org/10.1007/s00248-012-0153-4openalex-snapshot
Intra- and Intergenomic Variation of Ribosomal RNA Operons in Concurrent Alteromonas macleodii Strains
inferred← citeshttps://doi.org/10.1007/s00248-016-0897-3openalex-snapshot
Detection and Diversity of the Nitrite Oxidoreductase Alpha Subunit (nxrA) Gene of Nitrospina in Marine Sediments
inferred← citeshttps://doi.org/10.1007/s00248-020-01638-yopenalex-snapshot
Merging Fungal and Bacterial Community Profiles via an Internal Control
inferred← citeshttps://doi.org/10.1007/s00253-012-4262-2openalex-snapshot
Molecular tools for deciphering the microbial community structure and diversity in rumen ecosystem
inferred← citeshttps://doi.org/10.1007/s00253-013-4974-yopenalex-snapshot
Dynamics of lactic acid bacteria populations in Rioja wines by PCR-DGGE, comparison with culture-dependent methods
inferred← citeshttps://doi.org/10.1007/s00253-014-5550-9openalex-snapshot
DNA barcoding to map the microbial communities: current advances and future directions
inferred← citeshttps://doi.org/10.1007/s00253-014-5870-9openalex-snapshot
Molecular biology-based methods for quantification of bacteria in mixed culture: perspectives and limitations
inferred← citeshttps://doi.org/10.1007/s00253-014-5928-8openalex-snapshot
Microbial community study in newly established Qingcaosha Reservoir of Shanghai, China
inferred← citeshttps://doi.org/10.1007/s00284-010-9846-4openalex-snapshot
A Novel Antifungal Pseudomonas fluorescens Isolated from Potato Soils in Greenland
inferred← citeshttps://doi.org/10.1007/s00284-012-0197-1openalex-snapshot
The Gut Bacteria Associated with Camponotus japonicus Mayr with Culture-Dependent and DGGE Methods
inferred← citeshttps://doi.org/10.1007/s00284-018-1482-4openalex-snapshot
Cross-Reactivity of Prokaryotic 16S rDNA-Specific Primers to Eukaryotic DNA: Mistaken Microbial Community Profiling in Environmental Samples
inferred← citeshttps://doi.org/10.1007/s00338-020-02006-5openalex-snapshot
Reducing host DNA contamination in 16S rRNA gene surveys of anthozoan microbiomes using PNA clamps
inferred← citeshttps://doi.org/10.1007/s00792-008-0194-2openalex-snapshot
Intraspecific polymorphism of 16S rRNA genes in two halophilic archaeal genera, Haloarcula and Halomicrobium
inferred← citeshttps://doi.org/10.1007/s00792-016-0820-3openalex-snapshot
Diversity of gene cassettes and the abundance of the class 1 integron-integrase gene in sediment polluted by metals
inferred← citeshttps://doi.org/10.1007/s00792-018-1066-zopenalex-snapshot
Biogeography of thermophiles and predominance of Thermus scotoductus in domestic water heaters
inferred← citeshttps://doi.org/10.1007/s00792-024-01358-yopenalex-snapshot
Molecular diversity of green-colored microbial mats from hot springs of northern Japan
inferred← citeshttps://doi.org/10.1007/s10123-020-00119-zopenalex-snapshot
Metagenomic analyses uncover the differential effect of azide treatment on bacterial community structure by enriching a specific Cyanobacteria present in a saline-alkaline environmental sample
inferred← citeshttps://doi.org/10.1007/s10123-026-00831-2openalex-snapshot
Whole-genome analysis and enzymatic profiling of Bacillus spizizenii as a xylanase-producing source from Iran
inferred← citeshttps://doi.org/10.1007/s10142-015-0433-4openalex-snapshot
Insights from 20 years of bacterial genome sequencing
inferred← citeshttps://doi.org/10.1007/s10482-014-0156-xopenalex-snapshot
Halapricum salinum gen. nov., sp. nov., an extremely halophilic archaeon isolated from non-purified solar salt
inferred← citeshttps://doi.org/10.1007/s10482-014-0259-4openalex-snapshot
Haladaptatus pallidirubidus sp. nov., a halophilic archaeon isolated from saline soil samples in Yunnan and Xinjiang, China
inferred← citeshttps://doi.org/10.1007/s10482-018-1054-4openalex-snapshot
Testing culture purity in prokaryotes: criteria and challenges
inferred← citeshttps://doi.org/10.1007/s10532-013-9662-1openalex-snapshot
Isolation and characterization of a novel Dehalobacter species strain TCP1 that reductively dechlorinates 2,4,6-trichlorophenol
inferred← citeshttps://doi.org/10.1007/s10539-010-9217-3openalex-snapshot
Gene sharing and genome evolution: networks in trees and trees in networks
inferred← citeshttps://doi.org/10.1007/s10750-008-9519-5openalex-snapshot
Morphological characteristics and phylogenetic relationship of Anabaena species from Lakes Dianchi and Erhai, China
inferred← citeshttps://doi.org/10.1007/s11033-024-09239-5openalex-snapshot
Microbial ensemble in the hives: deciphering the intricate gut ecosystem of hive and forager bees of Apis mellifera
inferred← citeshttps://doi.org/10.1007/s11033-026-12807-6openalex-snapshot
Mechanistic insights into the degradation of poly (3-hydroxybutyrate) and its copolymers by Nocardiopsis dassonvillei NCIM 5124
inferred← citeshttps://doi.org/10.1007/s11104-009-9946-8openalex-snapshot
Molecular tools in rhizosphere microbiology—from single-cell to whole-community analysis
inferred← citeshttps://doi.org/10.1007/s11270-017-3655-3openalex-snapshot
Effect of Silene vulgaris and Heavy Metal Pollution on Soil Microbial Diversity in Long-Term Contaminated Soil
inferred← citeshttps://doi.org/10.1007/s11274-026-05113-7openalex-snapshot
Potential of Bacillus amyloliquefaciens XSZ-1 as a bio-inoculant for enhancing cotton productivity and health in saline-alkali cotton field soil
inferred← citeshttps://doi.org/10.1007/s11356-015-5906-4openalex-snapshot
Persistent Hg contamination and occurrence of Hg-methylating transcript (hgcA) downstream of a chlor-alkali plant in the Olt River (Romania)
inferred← citeshttps://doi.org/10.1007/s12155-014-9486-9openalex-snapshot
New Insights into Clostridia Through Comparative Analyses of Their 40 Genomes
inferred← citeshttps://doi.org/10.1007/s12275-008-0117-zopenalex-snapshot
Turkey fecal microbial community structure and functional gene diversity revealed by 16S rRNA gene and metagenomic sequences
inferred← citeshttps://doi.org/10.1007/s12275-011-1136-8openalex-snapshot
Use of rpoB sequences and rep-PCR for phylogenetic study of Anoxybacillus species
inferred← citeshttps://doi.org/10.1007/s12275-014-3485-6openalex-snapshot
Regional effects on chimera formation in 454 pyrosequenced amplicons from a mock community
inferred← citeshttps://doi.org/10.1007/s13199-022-00831-6openalex-snapshot
So many rhizobial partners, so little nitrogen fixed: The intriguing symbiotic promiscuity of common bean (Phaseolus vulgaris L.)
inferred← citeshttps://doi.org/10.1007/s13205-016-0386-xopenalex-snapshot
Phylogenetic relationships of fluorescent pseudomonads deduced from the sequence analysis of 16S rRNA, Pseudomonas-specific and rpoD genes
inferred← citeshttps://doi.org/10.1007/s13205-018-1297-9openalex-snapshot
Characterization, phylogenetic distribution and evolutionary trajectories of diverse hydrocarbon degrading microorganisms isolated from refinery sludge
inferred← citeshttps://doi.org/10.1007/s13213-014-1017-6openalex-snapshot
Identification and phylogenetic relationship of Mannheimia varigena using the 16S rRNA subunit and the rpoB gene
inferred← citeshttps://doi.org/10.1016/b978-0-12-394394-1.00001-8openalex-snapshot
Biotechnologies for the Management of Genetic Resources for Food and Agriculture
inferred← citeshttps://doi.org/10.1016/b978-0-12-410472-3.00002-6openalex-snapshot
Long-Read, Single Molecule, Real-Time (SMRT) DNA Sequencing for Metagenomic Applications
inferred← citeshttps://doi.org/10.1016/b978-0-12-814849-5.00001-0openalex-snapshot
Methods of Assessment of Microbial Diversity in Natural Environments
inferred← citeshttps://doi.org/10.1016/b978-0-12-824411-1.00007-7openalex-snapshot
Analytical methods
inferred← citeshttps://doi.org/10.1016/b978-0-443-13320-6.00016-0openalex-snapshot
Molecular Tools for Assessing Bacterial Diversity From Natural Environments
inferred← citeshttps://doi.org/10.1016/bs.mim.2020.11.003openalex-snapshot
The use of probes and bacteriophages for the detection of bacteria
inferred← citeshttps://doi.org/10.1016/j.actatropica.2025.107795openalex-snapshot
Metatranscriptomic profiling of the bacterial and fungal microbiota of field-collected Anopheles darlingi from Colombia: Community composition and functional insights
inferred← citeshttps://doi.org/10.1016/j.anaerobe.2008.12.003openalex-snapshot
Phenotypic and genotypic analyses of clinical Fusobacterium nucleatum and Fusobacterium periodonticum isolates from the human gut
inferred← citeshttps://doi.org/10.1016/j.anaerobe.2013.06.001openalex-snapshot
Use of denaturing gradient gel electrophoresis to detect Actinobacteria associated with the human faecal microbiota
inferred← citeshttps://doi.org/10.1016/j.apjtm.2015.07.029openalex-snapshot
Genetic variation of Leptospira isolated from rats catched in Yogyakarta Indonesia
inferred← citeshttps://doi.org/10.1016/j.apsoil.2017.12.025openalex-snapshot
Arbuscular mycorrhizal fungal species differ in their capacity to overrule the soil’s legacy from maize monocropping
inferred← citeshttps://doi.org/10.1016/j.aqrep.2022.101312openalex-snapshot
Presence and habitats of bacterial fish pathogen relatives in a marine salmon post-smolt RAS
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2011.03.016openalex-snapshot
Water quality and microbial community structure in juvenile Atlantic cod (Gadus morhua L.) cultures
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2020.735497openalex-snapshot
Localisation of probiotic Vibrio midae K811 within the gastrointestinal tract of post-larval abalone, Haliotis midae
inferred← citeshttps://doi.org/10.1016/j.bcab.2017.12.006openalex-snapshot
Isolation and characterization of urease-producing bacteria from tropical peat
inferred← citeshttps://doi.org/10.1016/j.bcab.2018.07.003openalex-snapshot
Identification of a novel hydrogen producing bacteria from sugarcane bagasse waste
inferred← citeshttps://doi.org/10.1016/j.bej.2019.107246openalex-snapshot
Impacts of biofilm on monochloramine decay in storm sewer systems: Direct reactions or AOB cometabolism
inferred← citeshttps://doi.org/10.1016/j.biocontrol.2026.106028openalex-snapshot
Streptomyces taiwanensis sp. nov., a novel actinobacteria mediated management of banana Fusarium wilt
inferred← citeshttps://doi.org/10.1016/j.biortech.2012.03.045openalex-snapshot
Fate of tetracycline, sulfonamide and fluoroquinolone resistance genes and the changes in bacterial diversity during composting of swine manure
inferred← citeshttps://doi.org/10.1016/j.biortech.2020.123952openalex-snapshot
Integrating independent microbial studies to build predictive models of anaerobic digestion inhibition by ammonia and phenol
inferred← citeshttps://doi.org/10.1016/j.bios.2012.03.037openalex-snapshot
Label-free, multiplexed detection of bacterial tmRNA using silicon photonic microring resonators
inferred← citeshttps://doi.org/10.1016/j.bios.2019.05.007openalex-snapshot
A supersensitive MSPQC bacterium sensor based on 16S rRNA and “DNA-RNA switch”
inferred← citeshttps://doi.org/10.1016/j.biotechadv.2013.05.010openalex-snapshot
Quantitative real-time PCR approaches for microbial community studies in wastewater treatment systems: Applications and considerations
inferred← citeshttps://doi.org/10.1016/j.chom.2015.01.011openalex-snapshot
Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley
inferred← citeshttps://doi.org/10.1016/j.chom.2024.05.022openalex-snapshot
Discovery of disease-adapted bacterial lineages in inflammatory bowel diseases
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2025.108751openalex-snapshot
Survey on phylogenetic tree construction using machine learning
inferred← citeshttps://doi.org/10.1016/j.csbj.2018.02.006openalex-snapshot
Highlighting Clinical Metagenomics for Enhanced Diagnostic Decision-making: A Step Towards Wider Implementation
inferred← citeshttps://doi.org/10.1016/j.culher.2019.12.009openalex-snapshot
History and microbial biodeterioration of audiovisual materials
inferred← citeshttps://doi.org/10.1016/j.diagmicrobio.2013.07.013openalex-snapshot
Comparison of rpoB gene sequencing, 16S rRNA gene sequencing, gyrB multiplex PCR, and the VITEK2 system for identification of Acinetobacter clinical isolates
inferred← citeshttps://doi.org/10.1016/j.diagmicrobio.2026.117449openalex-snapshot
From culture to metagenomics: A paradigm shift in diagnosing infective endocarditis
inferred← citeshttps://doi.org/10.1016/j.ebiom.2019.07.034openalex-snapshot
Temporal association of the development of oropharyngeal microbiota with early life wheeze in a population-based birth cohort
inferred← citeshttps://doi.org/10.1016/j.ecocom.2017.02.004openalex-snapshot
Sampling, sequencing and the SAD
inferred← citeshttps://doi.org/10.1016/j.ejsobi.2010.11.010openalex-snapshot
A review of molecular methods to study the microbiota of soil and the mycosphere
inferred← citeshttps://doi.org/10.1016/j.fm.2008.04.009openalex-snapshot
Recent advances in molecular techniques to study microbial communities in food-associated matrices and processes
inferred← citeshttps://doi.org/10.1016/j.fm.2013.06.001openalex-snapshot
16S rRNA partial gene sequencing for the differentiation and molecular subtyping of Listeria species
inferred← citeshttps://doi.org/10.1016/j.fm.2018.01.015openalex-snapshot
Genotypic and phenotypic characterization of the food spoilage bacterium Brochothrix thermosphacta
inferred← citeshttps://doi.org/10.1016/j.foodcont.2017.03.024openalex-snapshot
Development of primer set for the identification of fish species in surimi products using denaturing gradient gel electrophoresis
inferred← citeshttps://doi.org/10.1016/j.foodres.2025.116380openalex-snapshot
Development of reference-based model for improved analysis of bacterial community
inferred← citeshttps://doi.org/10.1016/j.fsigen.2016.10.005openalex-snapshot
Soil characterisation by bacterial community analysis for forensic applications: A quantitative comparison of environmental technologies
inferred← citeshttps://doi.org/10.1016/j.gastrohep.2015.01.004openalex-snapshot
Caracterización, influencia y manipulación de la microbiota gastrointestinal en salud y enfermedad
inferred← citeshttps://doi.org/10.1016/j.hal.2008.02.010openalex-snapshot
Genetic characterisation of Cylindrospermopsis raciborskii (Nostocales, Cyanobacteria) isolates from Africa and Europe
inferred← citeshttps://doi.org/10.1016/j.hazadv.2024.100439openalex-snapshot
Taxonomic and evolutionary insights from comparative genomics of hydrocarbon degrading bacteria isolated from petroleum reservoirs
inferred← citeshttps://doi.org/10.1016/j.idairyj.2008.11.004openalex-snapshot
Intragenomic 16S rRNA gene heterogeneity in Lactococcus lactis subsp. cremoris
inferred← citeshttps://doi.org/10.1016/j.ijfoodmicro.2015.03.013openalex-snapshot
Identification of acetic acid bacteria in traditionally produced vinegar and mother of vinegar by using different molecular techniques
inferred← citeshttps://doi.org/10.1016/j.ijfoodmicro.2015.05.010openalex-snapshot
The predominance of Lactobacillus sanfranciscensis in French organic sourdoughs and its impact on related bread characteristics
inferred← citeshttps://doi.org/10.1016/j.ijfoodmicro.2020.108573openalex-snapshot
Development of a multiplex real-time PCR assay for the identification and quantification of group-specific Bacillus spp. and the genus Paenibacillus
inferred← citeshttps://doi.org/10.1016/j.ijfoodmicro.2022.109613openalex-snapshot
Aerobic spore-forming bacteria in powdered infant formula: Enumeration, identification by MALDI-TOF mass spectrometry (MS), presence of toxin genes and rpoB gene typing
inferred← citeshttps://doi.org/10.1016/j.jes.2014.05.027openalex-snapshot
Analysis of the bacterial community composition in acidic well water used for drinking in Guinea-Bissau, West Africa
inferred← citeshttps://doi.org/10.1016/j.jflm.2017.05.009openalex-snapshot
Postmortem microbial communities in burial soil layers of skeletonized humans
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2019.04.020openalex-snapshot
Antibiotic resistance genes attenuated with salt accumulation in saline soil
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2023.131660openalex-snapshot
Seasonal and spatial variations of antibiotic resistance genes and bacterial biodiversity in biofilms covering the equipment at successive stages of drinking water purification
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2023.133122openalex-snapshot
Labile carbon inputs boost microbial contribution to legacy mercury reduction and emissions from industry-polluted soils
inferred← citeshttps://doi.org/10.1016/j.joen.2008.12.022openalex-snapshot
Bacterial Community Profiling of Cryogenically Ground Samples from the Apical and Coronal Root Segments of Teeth with Apical Periodontitis
inferred← citeshttps://doi.org/10.1016/j.joen.2009.08.005openalex-snapshot
Real-time Polymerase Chain Reaction Quantification of Porphyromonas gingivalis and Tannerella forsythia in Primary Endodontic Infections
inferred← citeshttps://doi.org/10.1016/j.jpba.2020.113787openalex-snapshot
Insects’ potential: Understanding the functional role of their gut microbiome
inferred← citeshttps://doi.org/10.1016/j.lwt.2022.113573openalex-snapshot
An Illumina MiSeq sequencing-based method using the mreB gene for high-throughput discrimination of Pseudomonas species in raw milk
inferred← citeshttps://doi.org/10.1016/j.mcp.2009.02.001openalex-snapshot
An rpoD-based PCR procedure for the identification of Pseudomonas species and for their detection in environmental samples
inferred← citeshttps://doi.org/10.1016/j.medmic.2021.100034openalex-snapshot
Absolute quantitation of oral bacteria involved in oral cancer by real-time PCR
inferred← citeshttps://doi.org/10.1016/j.micinf.2016.03.011openalex-snapshot
The salivary microbiome for differentiating individuals: proof of principle
inferred← citeshttps://doi.org/10.1016/j.micpath.2017.11.012openalex-snapshot
Nocardiosis from 1888 to 2017
inferred← citeshttps://doi.org/10.1016/j.micres.2010.02.003openalex-snapshot
Microbial phylogeny and diversity: Small subunit ribosomal RNA sequence analysis and beyond
inferred← citeshttps://doi.org/10.1016/j.micres.2018.08.015openalex-snapshot
Profiles of quorum sensing (QS)-related sequences in phycospheric microorganisms during a marine dinoflagellate bloom, as determined by a metagenomic approach
inferred← citeshttps://doi.org/10.1016/j.mimet.2012.09.004openalex-snapshot
A quantitative PCR method for assessing the presence of Pasteurella testudinis DNA in nasal lavage samples from the desert tortoise (Gopherus agassizii)
inferred← citeshttps://doi.org/10.1016/j.mimet.2012.09.016openalex-snapshot
Development of bacteria identification array to detect lactobacilli in Thai fermented sausage
inferred← citeshttps://doi.org/10.1016/j.mimet.2012.09.018openalex-snapshot
Development of a custom 16S rRNA gene library for the identification and molecular subtyping of Salmonella enterica
inferred← citeshttps://doi.org/10.1016/j.mimet.2013.12.022openalex-snapshot
tuf-PCR-temporal temperature gradient gel electrophoresis for molecular detection and identification of staphylococci: Application to breast milk and neonate gut microbiota
inferred← citeshttps://doi.org/10.1016/j.mimet.2016.06.008openalex-snapshot
Expression stability of 13 housekeeping genes during carbon starvation of Pseudomonas aeruginosa
inferred← citeshttps://doi.org/10.1016/j.mimet.2018.05.025openalex-snapshot
Does universal 16S rRNA gene amplicon sequencing of environmental communities provide an accurate description of nitrifying guilds?
inferred← citeshttps://doi.org/10.1016/j.mimet.2019.03.005openalex-snapshot
Rapid and reasonable molecular identification of bacteria and fungi in microbiological diagnostics using rapid real-time PCR and Sanger sequencing
inferred← citeshttps://doi.org/10.1016/j.mimet.2021.106350openalex-snapshot
Development of a database and standardized approach for rpoB sequence-based subtyping and identification of aerobic spore-forming Bacillales
inferred← citeshttps://doi.org/10.1016/j.molp.2020.12.002openalex-snapshot
Mycorrhizal symbiosis modulates the rhizosphere microbiota to promote rhizobia–legume symbiosis
inferred← citeshttps://doi.org/10.1016/j.nahs.2020.100948openalex-snapshot
Randomly switching evolution equations
inferred← citeshttps://doi.org/10.1016/j.patbio.2011.03.014openalex-snapshot
Intragenomic and intraspecific heterogeneity of the 16S rRNA gene in seven bacterial species from the respiratory tract of cystic fibrosis patients assessed by PCR-Temporal Temperature Gel Electrophoresis
inferred← citeshttps://doi.org/10.1016/j.plasmid.2021.102576openalex-snapshot
An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms
inferred← citeshttps://doi.org/10.1016/j.psj.2026.107417openalex-snapshot
Importance of methods selected for microbiome studies: State of the science and challenges
inferred← citeshttps://doi.org/10.1016/j.resmic.2013.01.003openalex-snapshot
In silico analysis of tkt1 from avian pathogenic Escherichia coli and its virulence evaluation in chickens
inferred← citeshttps://doi.org/10.1016/j.rhisph.2021.100360openalex-snapshot
Effect of mycorrhizal fungi inoculation on bacterial diversity, community structure and fruit yield of blueberry
inferred← citeshttps://doi.org/10.1016/j.scib.2020.03.005openalex-snapshot
An amplification-selection model for quantified rhizosphere microbiota assembly
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2017.10.110openalex-snapshot
Arctic antibiotic resistance gene contamination, a result of anthropogenic activities and natural origin
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2020.140466openalex-snapshot
The impact of WWTP size and sampling season on the prevalence of antibiotic resistance genes in wastewater and the river system
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2020.141451openalex-snapshot
Differential prevalence and host-association of antimicrobial resistance traits in disinfected and non-disinfected drinking water systems
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2021.149862openalex-snapshot
Survival strategy of comammox bacteria in a wastewater nutrient removal system with sludge fermentation liquid as additional carbon source
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2023.163890openalex-snapshot
Shifts in sediment bacterial communities reflect changes in depositional environments in a fluviatile context
inferred← citeshttps://doi.org/10.1016/j.snb.2020.128784openalex-snapshot
Probe-lengthening amplification-assisted microchip electrophoresis for ultrasensitive bacteria screening
inferred← citeshttps://doi.org/10.1016/j.soilbio.2014.07.026openalex-snapshot
Diversity and distribution of rhizobia nodulated with Phaseolus vulgaris in two ecoregions of China
inferred← citeshttps://doi.org/10.1016/j.soilbio.2017.10.033openalex-snapshot
Rhizobia inhabiting nodules and rhizosphere soils of alfalfa: A strong selection of facultative microsymbionts
inferred← citeshttps://doi.org/10.1016/j.syapm.2008.09.002openalex-snapshot
Genetic diversity of Streptomyces spp. causing common scab of potato in eastern Canada
inferred← citeshttps://doi.org/10.1016/j.syapm.2012.05.002openalex-snapshot
Nakamurella panacisegetis sp. nov. and proposal for reclassification of Humicoccus flavidus Yoon et al., 2007 and Saxeibacter lacteus Lee et al., 2008 as Nakamurella flavida comb. nov. and Nakamurella lactea comb. nov.
inferred← citeshttps://doi.org/10.1016/j.tim.2007.05.004openalex-snapshot
Integrons: mobilizable platforms that promote genetic diversity in bacteria
inferred← citeshttps://doi.org/10.1016/j.tim.2008.09.008openalex-snapshot
The rpoB gene as a tool for clinical microbiologists
inferred← citeshttps://doi.org/10.1016/j.wasman.2017.10.007openalex-snapshot
Monitoring of microbial communities in anaerobic digestion sludge for biogas optimisation
inferred← citeshttps://doi.org/10.1016/j.watres.2020.116604openalex-snapshot
Time to act–assessing variations in qPCR analyses in biological nitrogen removal with examples from partial nitritation/anammox systems
inferred← citeshttps://doi.org/10.1016/j.ygeno.2017.10.007openalex-snapshot
Planctomycetes attached to algal surfaces: Insight into their genomes
inferred← citeshttps://doi.org/10.1016/j.ympev.2016.12.010openalex-snapshot
A report on extensive lateral genetic reciprocation between arsenic resistant Bacillus subtilis and Bacillus pumilus strains analyzed using RAPD-PCR
inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108746openalex-snapshot
Universal single-copy genes and 16S rDNA present incongruent evolutionary histories in Vibrio
inferred← citeshttps://doi.org/10.1016/s1001-0742(08)62158-0openalex-snapshot
Dynamic changes of microbial community diversity in a photohydrogen producing reactor monitored by PCR-DGGE
inferred← citeshttps://doi.org/10.1017/9781107707399.015openalex-snapshot
Phylogenetic Techniques in Geomicrobiology
inferred← citeshttps://doi.org/10.1017/s175173111200078xopenalex-snapshot
Flaxseed supplementation decreases methanogenic gene abundance in the rumen of dairy cows
inferred← citeshttps://doi.org/10.1021/acs.est.2c08818openalex-snapshot
Biotrickling Filtration for the Reduction of N2O Emitted during Wastewater Treatment: Results from a Long-Term In Situ Pilot-Scale Testing
inferred← citeshttps://doi.org/10.1021/acs.est.5b01031openalex-snapshot
Accumulation of Clinically Relevant Antibiotic-Resistance Genes, Bacterial Load, and Metals in Freshwater Lake Sediments in Central Europe
inferred← citeshttps://doi.org/10.1021/acs.est.9b07641openalex-snapshot
Municipal Solid Waste Treatment System Increases Ambient Airborne Bacteria and Antibiotic Resistance Genes
inferred← citeshttps://doi.org/10.1021/pr8009885openalex-snapshot
Top-Down Systems Biology Modeling of Host Metabotype−Microbiome Associations in Obese Rodents
inferred← citeshttps://doi.org/10.1038/ismej.2010.161openalex-snapshot
Spatial organization of intestinal microbiota in the mouse ascending colon
inferred← citeshttps://doi.org/10.1038/ismej.2011.75openalex-snapshot
Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm
inferred← citeshttps://doi.org/10.1038/ismej.2015.101openalex-snapshot
Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota
inferred← citeshttps://doi.org/10.1038/nature24661openalex-snapshot
A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites
inferred← citeshttps://doi.org/10.1038/nbt.4229openalex-snapshot
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
inferred← citeshttps://doi.org/10.1038/ncomms2615openalex-snapshot
A novel metatranscriptomic approach to identify gene expression dynamics during extracellular electron transfer
inferred← citeshttps://doi.org/10.1038/s41396-019-0502-0openalex-snapshot
Metagenomic and chemical characterization of soil cobalamin production
inferred← citeshttps://doi.org/10.1038/s41396-019-0563-0openalex-snapshot
Swift evolutionary response of microbes to a rise in anthropogenic mercury in the Northern Hemisphere
inferred← citeshttps://doi.org/10.1038/s41396-021-00960-8openalex-snapshot
Nutrient supplementation experiments with saltern microbial communities implicate utilization of DNA as a source of phosphorus
inferred← citeshttps://doi.org/10.1038/s41396-021-01178-4openalex-snapshot
Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution
inferred← citeshttps://doi.org/10.1038/s41429-022-00569-9openalex-snapshot
Antibiotic resistance and carriage class I integron in clinical isolates of Acinetobacter baumannii from Al Muthanna, Iraq
inferred← citeshttps://doi.org/10.1038/s41597-024-03518-3openalex-snapshot
16S rRNA, metagenomics and 2bRAD-M sequencing to decode human thanatomicrobiome
inferred← citeshttps://doi.org/10.1038/s41598-018-37062-zopenalex-snapshot
Interactions within the microbiome alter microbial interactions with host chemical defences and affect disease in a marine holobiont
inferred← citeshttps://doi.org/10.1038/s41598-021-00026-xopenalex-snapshot
MinION sequencing from sea ice cryoconites leads to de novo genome reconstruction from metagenomes
inferred← citeshttps://doi.org/10.1038/s41598-021-01636-1openalex-snapshot
Enhancing diversity analysis by repeatedly rarefying next generation sequencing data describing microbial communities
inferred← citeshttps://doi.org/10.1038/s41598-022-23886-3openalex-snapshot
Biotechnology methods for succession of bacterial communities in polychlorinated biphenyls (PCBs) contaminated soils and isolation novel PCBs-degrading bacteria
inferred← citeshttps://doi.org/10.1038/s41598-023-49881-wopenalex-snapshot
S9.6-based hybrid capture immunoassay for pathogen detection
inferred← citeshttps://doi.org/10.1038/s41598-025-15530-7openalex-snapshot
Development of strain specific simple sequence repeats and assessment of genetic diversity in Erwinia amylovora from marker selection to phylogenetic analysis
inferred← citeshttps://doi.org/10.1038/srep08820openalex-snapshot
Variations of gastric corpus microbiota are associated with early esophageal squamous cell carcinoma and squamous dysplasia
inferred← citeshttps://doi.org/10.1038/srep15840openalex-snapshot
Genome-wide identification and characterization of reference genes with different transcript abundances for Streptomyces coelicolor
inferred← citeshttps://doi.org/10.1039/d4va00112eopenalex-snapshot
Solving freshwater conservation challenges through next-generation sequencing approaches
inferred← citeshttps://doi.org/10.1042/etls20200313openalex-snapshot
Plant growth-promoting microbes — an industry view
inferred← citeshttps://doi.org/10.1063/1.5027939openalex-snapshot
The effectiveness of 28S and 16S molecular regions in resolving phylogeny of Malaysian microgastrinae (Hymenoptera: Braconidae)
showing the first 200 of 569 · page through all 569
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.