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An RpoHI-Dependent Response Promotes Outgrowth after Extended Stationary Phase in the Alphaproteobacterium Rhodobacter sphaeroides

https://doi.org/10.1128/jb.00249-17
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-0-387-78885-2_4openalex-snapshot
The Two-Component Network and the General Stress Sigma Factor RpoS (σS) in Escherichia coli
inferredcites →https://doi.org/10.1007/s00018-003-3242-1openalex-snapshot
Oxygen intervention in the regulation of gene expression: the photosynthetic bacterial paradigm
inferredcites →https://doi.org/10.1016/j.tim.2013.01.002openalex-snapshot
Bacterial lifestyle shapes stringent response activation
inferredcites →https://doi.org/10.1016/j.tim.2014.12.006openalex-snapshot
The general stress response in Alphaproteobacteria
inferredcites →https://doi.org/10.1016/s0076-6879(06)11009-5openalex-snapshot
[9] TM4 Microarray Software Suite
inferredcites →https://doi.org/10.1016/s0378-1097(99)00374-2openalex-snapshot
Regulation of bacterial photosynthesis genes by oxygen and light
inferredcites →https://doi.org/10.1016/s1046-2023(03)00155-5openalex-snapshot
Normalization of cDNA microarray data
inferredcites →https://doi.org/10.1021/pr060624popenalex-snapshot
Protein Synthesis Patterns Reveal a Complex Regulatory Response to Singlet Oxygen inRhodobacter
inferredcites →https://doi.org/10.1038/nature08756openalex-snapshot
The primary transcriptome of the major human pathogen Helicobacter pylori
inferredcites →https://doi.org/10.1038/nrmicro1340openalex-snapshot
Long-term survival during stationary phase: evolution and the GASP phenotype
inferredcites →https://doi.org/10.1046/j.1365-2958.2002.02787.xopenalex-snapshot
The alternative sigma factor σE controls antioxidant defences required for Salmonella virulence and stationary‐phase survival
inferredcites →https://doi.org/10.1073/pnas.0502225102openalex-snapshot
A transcriptional response to singlet oxygen, a toxic byproduct of photosynthesis
inferredcites →https://doi.org/10.1080/15476286.2015.1017211openalex-snapshot
The VrrA sRNA controls a stationary phase survival factor Vrp ofVibrio cholerae
inferredcites →https://doi.org/10.1080/15476286.2015.1031948openalex-snapshot
The sRNA SorY confers resistance during photooxidative stress by affecting a metabolite transporter inRhodobacter sphaeroides
inferredcites →https://doi.org/10.1093/bioinformatics/btm412openalex-snapshot
A comparison of background correction methods for two-colour microarrays
inferredcites →https://doi.org/10.1093/bioinformatics/btp472openalex-snapshot
The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets
inferredcites →https://doi.org/10.1093/bioinformatics/btu533openalex-snapshot
READemption—a tool for the computational analysis of deep-sequencing–based transcriptome data
inferredcites →https://doi.org/10.1093/nar/29.9.e45openalex-snapshot
A new mathematical model for relative quantification in real-time RT-PCR
inferredcites →https://doi.org/10.1093/nar/30.1.207openalex-snapshot
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
inferredcites →https://doi.org/10.1099/00221287-147-9-2399openalex-snapshot
Identification of the heat-shock sigma factor RpoH and a second RpoH-like protein in Sinorhizobium meliloti The GenBank accession numbers for the sequences reported in this paper are AF128845 (rpoH1) and AF149031 (rpoH2).
inferredcites →https://doi.org/10.1099/mic.0.021428-0openalex-snapshot
The Rhizobium etli RpoH1 and RpoH2 sigma factors are involved in different stress responses
inferredcites →https://doi.org/10.1111/j.1365-2958.2010.07336.xopenalex-snapshot
General stress response in α‐proteobacteria: PhyR and beyond
inferredcites →https://doi.org/10.1111/j.1574-6968.1986.tb01270.xopenalex-snapshot
Evidence for a coordinate transcriptional control of alpha-toxin and protein a synthesis inStaphylococcus aureus
inferredcites →https://doi.org/10.1111/j.1574-6976.2010.00213.xopenalex-snapshot
Stationary phase in gram-negative bacteria
inferredcites →https://doi.org/10.1111/j.1574-6976.2011.00279.xopenalex-snapshot
Growth rate regulation in Escherichia coli
inferredcites →https://doi.org/10.1111/j.1758-2229.2011.00245.xopenalex-snapshot
Response of the photosynthetic bacterium Rhodobacter sphaeroides to iron limitation and the role of a Fur orthologue in this response
inferredcites →https://doi.org/10.1111/mmi.13458openalex-snapshot
RpoS‐dependent sRNA RgsA regulates Fis and AcpP in Pseudomonas aeruginosa
inferredcites →https://doi.org/10.1128/jb.00405-06openalex-snapshot
Activity of Rhodobacter sphaeroides RpoH II , a Second Member of the Heat Shock Sigma Factor Family
inferredcites →https://doi.org/10.1128/jb.00449-12openalex-snapshot
Dual RpoH Sigma Factors and Transcriptional Plasticity in a Symbiotic Bacterium
inferredcites →https://doi.org/10.1128/jb.00644-06openalex-snapshot
An RpoH-Like Heat Shock Sigma Factor Is Involved in Stress Response and Virulence inBrucella melitensis16M
inferredcites →https://doi.org/10.1128/jb.00925-08openalex-snapshot
RpoH II Activates Oxidative-Stress Defense Systems and Is Controlled by RpoE in the Singlet Oxygen-Dependent Response in Rhodobacter sphaeroides
inferredcites →https://doi.org/10.1128/jb.01536-08openalex-snapshot
Growth Phase- and Cell Division-Dependent Activation and Inactivation of the σ 32 Regulon in Escherichia coli
inferredcites →https://doi.org/10.1128/jb.01605-09openalex-snapshot
Overlapping Alternative Sigma Factor Regulons in the Response to Singlet Oxygen inRhodobacter sphaeroides
inferredcites →https://doi.org/10.1128/jb.02475-14openalex-snapshot
A Cluster of Four Homologous Small RNAs Modulates C 1 Metabolism and the Pyruvate Dehydrogenase Complex in Rhodobacter sphaeroides under Various Stress Conditions
inferredcites →https://doi.org/10.1128/jb.181.20.6361-6370.1999openalex-snapshot
Growth Phase-Dependent Variation in Protein Composition of the Escherichia coli Nucleoid
inferredcites →https://doi.org/10.1128/jb.181.20.6547-6551.1999openalex-snapshot
Escherichia coli Lrp (Leucine-Responsive Regulatory Protein) Does Not Directly Regulate Expression of the leu Operon Promoter
inferredcites →https://doi.org/10.1128/jb.186.22.7726-7735.2004openalex-snapshot
Responses of the Rhodobacter sphaeroides Transcriptome to Blue Light under Semiaerobic Conditions
inferredcites →https://doi.org/10.1128/jb.187.5.1591-1603.2005openalex-snapshot
Genome-Wide Analysis of the General Stress Response Network in Escherichia coli : σ S -Dependent Genes, Promoters, and Sigma Factor Selectivity
inferredcites →https://doi.org/10.1146/annurev.micro.57.030502.090803openalex-snapshot
BrucellaStationary-Phase Gene Expression and Virulence
inferredcites →https://doi.org/10.1159/000350370openalex-snapshot
Crucial Roles of MicA and RybB as Vital Factors for σE-Dependent Cell Lysis in Escherichia coli Long-Term Stationary Phase
inferredcites →https://doi.org/10.1186/1471-2164-15-794openalex-snapshot
Role of oxygen and the OxyR protein in the response to iron limitation in Rhodobacter sphaeroides
inferredcites →https://doi.org/10.1186/1471-2180-10-265openalex-snapshot
The role of sigma factor RpoH1 in the pH stress response of Sinorhizobium meliloti
inferredcites →https://doi.org/10.1186/s12864-015-2162-4openalex-snapshot
Analysis of the FnrL regulon in Rhodobacter capsulatus reveals limited regulon overlap with orthologues from Rhodobacter sphaeroides and Escherichia coli
inferredcites →https://doi.org/10.1371/journal.pcbi.1000502openalex-snapshot
Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures
inferredcites →https://doi.org/10.1371/journal.pgen.1002929openalex-snapshot
Convergence of the Transcriptional Responses to Heat Shock and Singlet Oxygen Stresses
inferredcites →https://doi.org/10.1371/journal.pgen.1003493openalex-snapshot
Genome-Wide Identification of Regulatory RNAs in the Human Pathogen Clostridium difficile
inferredcites →https://doi.org/10.1371/journal.pgen.1003495openalex-snapshot
High-Resolution Transcriptome Maps Reveal Strain-Specific Regulatory Features of Multiple Campylobacter jejuni Isolates
inferredcites →https://doi.org/10.1371/journal.pgen.1003576openalex-snapshot
Integrative “Omics”-Approach Discovers Dynamic and Regulatory Features of Bacterial Stress Responses
inferredcites →https://doi.org/10.2144/03342mt01openalex-snapshot
TM4: A Free, Open-Source System for Microarray Data Management and Analysis
inferredcites →https://doi.org/10.3389/fmicb.2015.00164openalex-snapshot
Identification of a Novel Small Non-Coding RNA Modulating the Intracellular Survival of Brucella melitensis

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← backgroundhttps://doi.org/10.5281/zenodo.34192zenodo-depositor-declared
inferred← citeshttps://doi.org/10.1016/j.aquaeng.2019.102001openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.biortech.2019.02.076openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.micpath.2018.01.023openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41598-021-92845-1openalex-snapshot
Blue light directly modulates the quorum network in the human pathogen Acinetobacter baumannii
inferred← citeshttps://doi.org/10.1080/15476286.2020.1857520openalex-snapshot
Antisense RNA asPcrL regulates expression of photosynthesis genes in Rhodobacter sphaeroides by promoting RNase III-dependent turn-over of puf mRNA
inferred← citeshttps://doi.org/10.1080/15476286.2023.2195733openalex-snapshot
Ribonuclease E strongly impacts bacterial adaptation to different growth conditions
inferred← citeshttps://doi.org/10.1093/gigascience/giy096openalex-snapshot
ANNOgesic: a Swiss army knife for the RNA-seq based annotation of bacterial/archaeal genomes
inferred← citeshttps://doi.org/10.1093/nar/gkab146openalex-snapshot
The small DUF1127 protein CcaF1 from Rhodobacter sphaeroides is an RNA-binding protein involved in sRNA maturation and RNA turnover
inferred← citeshttps://doi.org/10.1093/nar/gkab491openalex-snapshot
sRNA-mediated RNA processing regulates bacterial cell division
inferred← citeshttps://doi.org/10.1111/1462-2920.14809openalex-snapshot
Adaptation of the Alphaproteobacterium Rhodobacter sphaeroides to stationary phase
inferred← citeshttps://doi.org/10.1111/1462-2920.15818openalex-snapshot
A major checkpoint for protein expression in Rhodobacter sphaeroides during heat stress response occurs at the level of translation
inferred← citeshttps://doi.org/10.1111/1758-2229.12718openalex-snapshot
A response regulator of the OmpR family is part of the regulatory network controlling the oxidative stress response of Rhodobacter sphaeroides
inferred← citeshttps://doi.org/10.1111/mmi.14076openalex-snapshot
PcrX, an sRNA derived from the 3′‐ UTR of the Rhodobacter sphaeroides puf operon modulates expression of puf genes encoding proteins of the bacterial photosynthetic apparatus
inferred← citeshttps://doi.org/10.1186/s12864-019-5749-3openalex-snapshot
Comparative analyses of the variation of the transcriptome and proteome of Rhodobacter sphaeroides throughout growth
inferred← citeshttps://doi.org/10.1186/s12866-018-1161-4openalex-snapshot
The PhyR homolog RSP_1274 of Rhodobacter sphaeroides is involved in defense of membrane stress and has a moderate effect on RpoE (RSP_1092) activity
inferred← citeshttps://doi.org/10.1186/s12866-024-03486-zopenalex-snapshot
DUF1127-containing protein and ProQ had opposite effects on biofilm formation in Vibrio alginolyticus
inferred← citeshttps://doi.org/10.1186/s12866-024-03624-7openalex-snapshot
Chemical quantification of N-acyl alanine methyl ester (NAME) production and impact on temporal gene expression patterns in Roseovarius tolerans EL-164
inferred← citeshttps://doi.org/10.3389/fmicb.2018.00978openalex-snapshot
Identification and Characterization of a Cis Antisense RNA of the rpoH Gene of Salmonella enterica Serovar Typhi
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1384543openalex-snapshot
Function of the RNA-targeting class 2 type VI CRISPR Cas system of Rhodobacter capsulatus
inferred← citeshttps://doi.org/10.3390/ijms22147557openalex-snapshot
A Complex Network of Sigma Factors and sRNA StsR Regulates Stress Responses in R. sphaeroides
inferred← citeshttps://doi.org/10.3390/ijms222212260openalex-snapshot
Maturation of UTR-Derived sRNAs Is Modulated during Adaptation to Different Growth Conditions
inferred← citeshttps://doi.org/10.3390/ijms232415486openalex-snapshot
A Small RNA, UdsC, Interacts with the RpoHII mRNA and Affects the Motility and Stress Resistance of Rhodobacter sphaeroides
inferred← citeshttps://doi.org/10.3390/ijms25169123openalex-snapshot
The Impact of the Major Endoribonucleases RNase E and RNase III and of the sRNA StsR on Photosynthesis Gene Expression in Rhodobacter sphaeroides Is Growth-Phase-Dependent
inferred← citeshttps://doi.org/10.3390/microorganisms11112678openalex-snapshot
The Regulatory Functions of the Multiple Alternative Sigma Factors RpoE, RpoHI, and RpoHII Depend on the Growth Phase in Rhodobacter sphaeroides
inferred← citeshttps://doi.org/10.3390/microorganisms7120671openalex-snapshot
Multiple Sense and Antisense Promoters Contribute to the Regulated Expression of the isc-suf Operon for Iron-Sulfur Cluster Assembly in Rhodobacter
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