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Evaluation of High-Throughput Sequencing for Identifying Known and Unknown Viruses in Biological Samples

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Detection of Novel Sequences Related to African Swine Fever Virus in Human Serum and Sewage
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Application of Broad-Spectrum Resequencing Microarray for Genotyping Rhabdoviruses
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Decreased Frequency of Cytomegalovirus (CMV)-Specific CD4+T Lymphocytes in Simian Immunodeficiency Virus-Infected Rhesus Macaques: Inverse Relationship with CMV Viremia
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Lyssavirus Matrix Protein Induces Apoptosis by a TRAIL-Dependent Mechanism Involving Caspase-8 Activation
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New DNA Viruses Identified in Patients with Acute Viral Infection Syndrome
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Phi29 polymerase based random amplification of viral RNA as an alternative to random RT-PCR
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Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations
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Occupancy Modeling, Maximum Contig Size Probabilities and Designing Metagenomics Experiments
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Panmicrobial Oligonucleotide Array for Diagnosis of Infectious Diseases

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Spatial scale influences taxon conservation in the eukaryotic virome of a mosquito
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Live rubella virus vaccine long-term persistence as an antigenic trigger of cutaneous granulomas in patients with primary immunodeficiency
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Saliva and viral infections
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A Member of a New Picornaviridae Genus Is Shed in Pig Feces
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Identification of the First Human Gyrovirus, a Virus Related to Chicken Anemia Virus
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The Perils of Pathogen Discovery: Origin of a Novel Parvovirus-Like Hybrid Genome Traced to Nucleic Acid Extraction Spin Columns
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Identical Consensus Sequence and Conserved Genomic Polymorphism of Hepatitis E Virus during Controlled Interspecies Transmission
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A Multicenter Study To Evaluate the Performance of High-Throughput Sequencing for Virus Detection
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Human Anelloviruses: Influence of Demographic Factors, Recombination, and Worldwide Diversity
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No evidence for viral sequences in five lepidic adenocarcinomas (former “BAC”) by a high-throughput sequencing approach
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ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens
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A Comparison between Transcriptome Sequencing and 16S Metagenomics for Detection of Bacterial Pathogens in Wildlife
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Human Skin Microbiota: High Diversity of DNA Viruses Identified on the Human Skin by High Throughput Sequencing
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Metagenomic Detection of Viral Pathogens in Spanish Honeybees: Co-Infection by Aphid Lethal Paralysis, Israel Acute Paralysis and Lake Sinai Viruses
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IMSA: Integrated Metagenomic Sequence Analysis for Identification of Exogenous Reads in a Host Genomic Background
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Next Generation Sequencing Uncovers Unexpected Bacterial Pathogens in Ticks in Western Europe
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A Preliminary Study of Viral Metagenomics of French Bat Species in Contact with Humans: Identification of New Mammalian Viruses
inferred← citeshttps://doi.org/10.1371/journal.pone.0122636openalex-snapshot
Target-Dependent Enrichment of Virions Determines the Reduction of High-Throughput Sequencing in Virus Discovery
inferred← citeshttps://doi.org/10.1371/journal.pone.0139810openalex-snapshot
Host-Associated Metagenomics: A Guide to Generating Infectious RNA Viromes
inferred← citeshttps://doi.org/10.1371/journal.pone.0151481openalex-snapshot
The Intestinal Eukaryotic Virome in Healthy and Diarrhoeic Neonatal Piglets
inferred← citeshttps://doi.org/10.1371/journal.pone.0232138openalex-snapshot
Investigation of viral etiology in potentially malignant disorders and oral squamous cell carcinomas in non-smoking, non-drinking patients
inferred← citeshttps://doi.org/10.1371/journal.pone.0300915openalex-snapshot
Host influence on the eukaryotic virome of sympatric mosquitoes and abundance of diverse viruses with a broad host range
inferred← citeshttps://doi.org/10.1371/journal.ppat.1002282openalex-snapshot
A Wide Extent of Inter-Strain Diversity in Virulent and Vaccine Strains of Alphaherpesviruses
inferred← citeshttps://doi.org/10.14288/1.0073777openalex-snapshot
Metagenomic analyses of two female genital tract diseases : bacterial vaginosis and ovarian cancer
inferred← citeshttps://doi.org/10.1533/9780857099167.1.3openalex-snapshot
Nucleic acid sequencing for characterizing infectious and/or novel agents in complex samples
inferred← citeshttps://doi.org/10.15666/aeer/1906_42814298openalex-snapshot
PROSPECTS FOR DIATOMS IDENTIFICATION USING METAGENOMICS: A REVIEW
inferred← citeshttps://doi.org/10.1684/vir.2014.0576openalex-snapshot
Diagnostic des viroses et séquençage haut débit : vers un changement de paradigme ?
inferred← citeshttps://doi.org/10.20506/rst.32.2.2206openalex-snapshot
High-throughput sequencing in veterinary infection biology and diagnostics
inferred← citeshttps://doi.org/10.21775/cimb.024.059openalex-snapshot
Comparing Viral Metagenomic Extraction Methods
inferred← citeshttps://doi.org/10.2217/fmb.12.30openalex-snapshot
Application of Resequencing Microarrays in Microbial Detection and Characterization
inferred← citeshttps://doi.org/10.2340/00015555-2686openalex-snapshot
No Viral Transcripts Associated with Folliculotropic Mycosis Fungoides Using a High Throughput Sequencing Approach
inferred← citeshttps://doi.org/10.24272/j.issn.2095-8137.2022.093openalex-snapshot
Metagenomic analysis reveals presence of different animal viruses in commercial fetal bovine serum and trypsin
inferred← citeshttps://doi.org/10.2450/2016.0160-15openalex-snapshot
Viral metagenomics applied to blood donors and recipients at high risk for blood-borne infections.
inferred← citeshttps://doi.org/10.2478/jvetres-2019-0067openalex-snapshot
Evaluation of direct metagenomics and target enriched approaches for high-throughput sequencing of field rabies viruses
inferred← citeshttps://doi.org/10.2741/4329openalex-snapshot
Molecular diagnosis in lung diseases
inferred← citeshttps://doi.org/10.31274/etd-180810-3876openalex-snapshot
Nucleic acid detection techniques for adventitious agent testing
inferred← citeshttps://doi.org/10.3389/fcimb.2014.00062openalex-snapshot
To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies
inferred← citeshttps://doi.org/10.3389/fcimb.2018.00375openalex-snapshot
Limited Correlation of Shotgun Metagenomics Following Host Depletion and Routine Diagnostics for Viruses and Bacteria in Low Concentrated Surrogate and Clinical Samples
inferred← citeshttps://doi.org/10.3389/fmars.2017.00441openalex-snapshot
Novel ssDNA Viruses Detected in the Virome of Bleached, Habitat-Forming Kelp Ecklonia radiata
inferred← citeshttps://doi.org/10.3390/ijms12117861openalex-snapshot
Applications of Next-Generation Sequencing Technologies to Diagnostic Virology
inferred← citeshttps://doi.org/10.3390/v10080429openalex-snapshot
Overview of Trends in the Application of Metagenomic Techniques in the Analysis of Human Enteric Viral Diversity in Africa’s Environmental Regimes
inferred← citeshttps://doi.org/10.3390/v13020253openalex-snapshot
Deep Impact of Random Amplification and Library Construction Methods on Viral Metagenomics Results
inferred← citeshttps://doi.org/10.3390/v13122425openalex-snapshot
Virome Characterization in Commercial Bovine Serum Batches—A Potentially Needed Testing Strategy for Biological Products
inferred← citeshttps://doi.org/10.3390/v9060138openalex-snapshot
Viral Encephalitis of Unknown Cause: Current Perspective and Recent Advances
inferred← citeshttps://doi.org/10.35690/978-2-7592-2203-2openalex-snapshot
Faune sauvage, biodiversité et santé, quels défis ?
inferred← citeshttps://doi.org/10.3855/jidc.3749openalex-snapshot
Next-generation sequencing and bioinformatic approaches to detect and analyze influenza virus in ferrets
inferred← citeshttps://doi.org/10.4066/biomedicalresearch.29-18-362openalex-snapshot
Next-generation sequencing technologies as emergent tools and their challenges in viral diagnostic
inferred← citeshttps://doi.org/10.4172/2327-5073.1000181openalex-snapshot
Epidemiological Investigation of an Outbreak of Acute Encephalitis Syndrome (AES) in Malda District of West Bengal, India
inferred← citeshttps://doi.org/10.5501/wjv.v4.i3.265openalex-snapshot
Next-generation sequencing in clinical virology: Discovery of new viruses
inferred← citeshttps://doi.org/10.56093/ijas.v86i3.56827openalex-snapshot
Acute Encephalitis Syndrome and its alleged litchi (Litchi chinensis) connection—A review and status
inferred← citeshttps://doi.org/10.5731/pdajpst.2014.00980openalex-snapshot
Meeting Report: 2013 PDA Virus & TSE Safety Forum
inferred← citeshttps://doi.org/10.5731/pdajpst.2014.01012openalex-snapshot
Need for New Technologies for Detection of Adventitious Agents in Vaccines and Other Biological Products
inferred← citeshttps://doi.org/10.5731/pdajpst.2014.01014openalex-snapshot
Parallel Evaluation of Broad Virus Detection Methods
inferred← citeshttps://doi.org/10.5731/pdajpst.2014.01015openalex-snapshot
Whole Genome: Next-Generation Sequencing as a Virus Safety Test for Biotechnological Products
inferred← citeshttps://doi.org/10.5731/pdajpst.2014.01023openalex-snapshot
Cataloguing the Taxonomic Origins of Sequences from a Heterogeneous Sample Using Phylogenomics: Applications in Adventitious Agent Detection
inferred← citeshttps://doi.org/10.5772/64371openalex-snapshot
Application of the New Generation of Sequencing Technologies for Evaluation of Genetic Consistency of Influenza A Vaccine Viruses
inferred← citeshttps://doi.org/10.70675/29be276az592dz47b9z97e6z9bd5de8711feopenalex-snapshot
Séquençage et PCR à haut débit : application à la détection et la caractérisation d'agents pathogènes respiratoires aviaires et au contrôle de pureté microbiologique des vaccins
inferred← citeshttps://doi.org/10.70675/67e9548fz6487z4ee5zad46zfed7f413018bopenalex-snapshot
Caractérisation des communautés virales de vecteurs & réservoirs de zoonoses : exemples des culicoïdes et de la viande de brousse
inferred← citeshttps://doi.org/10.70675/6bb882e3z6248z42f5zb987z2f2e1d7457cdopenalex-snapshot
Mechanistic study and prediction of influenza A virus genetic reassortment
inferred← citeshttps://doi.org/10.7554/elife.13135openalex-snapshot
Evidence of human infection by a new mammarenavirus endemic to Southeastern Asia
inferred← citeshttps://doi.org/10.7939/r3901zw84openalex-snapshot
Application of Next Generation Sequencing and Bioinformatic Approaches to the Study of Influenza Virus Strains and MiRNA Profiling in Liver Diseases
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