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Impact of Endogenous Intronic Retroviruses on Major Histocompatibility Complex Class II Diversity and Stability

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Evidence That HERV-K Is the Endogenous Retrovirus Sequence That Codes for the Human Teratocarcinoma-Derived Retrovirus HTDV

inferredcites →https://doi.org/10.1007/bf00057437openalex-snapshot

The major histocompatibility complex of primates

inferredcites →https://doi.org/10.1007/bf00166832openalex-snapshot

The evolutionary origin of the HLA-DR3 haplotype

inferredcites →https://doi.org/10.1007/bf00182316openalex-snapshot

Primate DRB genes from the DR3 and DR8 haplotypes contain ERV9 LTR elements at identical positions

inferredcites →https://doi.org/10.1007/bf00209291openalex-snapshot

Trans-species evolution of Mhc-DRB haplotype polymorphism in primates: Organization of DRB genes in the chimpanzee

inferredcites →https://doi.org/10.1007/bf00223539openalex-snapshot

Mhc-DRB diversity of the chimpanzee (Pan troglodytes)

inferredcites →https://doi.org/10.1007/bf00223540openalex-snapshot

Trans-species origin of Mhc-DRB polymorphism in the chimpanzee

inferredcites →https://doi.org/10.1007/bf02338798openalex-snapshot

Evolutionary relationship ofHLA-DRB genes inferred from intron sequences

inferredcites →https://doi.org/10.1007/bf02440998openalex-snapshot

Evolutionary relationship between human major histocompatibility complex HLA-DR haplotypes

inferredcites →https://doi.org/10.1007/pl00006511openalex-snapshot

Comparison Between Two Human Endogenous Retrovirus (HERV)-Rich Regions Within the Major Histocompatibility Complex

inferredcites →https://doi.org/10.1007/pl00006537openalex-snapshot

Coevolution of PERB11 (MIC) and HLA Class I Genes with HERV-16 and Retroelements by Extended Genomic Duplication

inferredcites →https://doi.org/10.1007/s00239-006-0045-7openalex-snapshot

Comparative Genomic Analysis of Human and Chimpanzee Indicates a Key Role for Indels in Primate Evolution

inferredcites →https://doi.org/10.1007/s00251-004-0717-7openalex-snapshot

Comparative genomics of major histocompatibility complexes

inferredcites →https://doi.org/10.1007/s00251-006-0083-8openalex-snapshot

Extensive sharing of MHC class II alleles between rhesus and cynomolgus macaques

inferredcites →https://doi.org/10.1007/s00251-006-0102-9openalex-snapshot

Study of Cynomolgus monkey (Macaca fascicularis) MhcDRB (Mafa-DRB) polymorphism in two populations

inferredcites →https://doi.org/10.1007/s002510050028openalex-snapshot

Convergent evolution of major histocompatibility complex molecules in humans and New World monkeys

inferredcites →https://doi.org/10.1007/s002510050563openalex-snapshot

Complete cDNA sequences of the DRB6 gene from humans and chimpanzees: a possible model of a stop codon readingthrough mechanism in primates

inferredcites →https://doi.org/10.1016/0198-8859(91)90058-hopenalex-snapshot

Gorilla major histocompatibility complex-DRB pseudogene orthologous to HLA-DRBVIII

inferredcites →https://doi.org/10.1016/0198-8859(94)00102-vopenalex-snapshot

Characterization of three separated exons in the HLA class II DR region of the human major histocompatibility complex

inferredcites →https://doi.org/10.1016/0378-1119(87)90412-4openalex-snapshot

Natural history of the major histo-compatibility complex

inferredcites →https://doi.org/10.1016/b978-0-12-545025-6.x5127-2openalex-snapshot

The HLA FactsBook

inferredcites →https://doi.org/10.1016/j.humimm.2006.03.007openalex-snapshot

Comparative Genetics of MHC Polymorphisms in Different Primate Species: Duplications and Deletions

inferredcites →https://doi.org/10.1016/j.molimm.2008.02.017openalex-snapshot

Reshuffling of ancient peptide binding motifs between HLA-DRB multigene family members: Old wine served in new skins

inferredcites →https://doi.org/10.1016/s0021-9258(18)47480-7openalex-snapshot

Class II genes of the human major histocompatibility complex. Organization and evolutionary relationship of the DR beta genes.

inferredcites →https://doi.org/10.1016/s0168-9525(00)02093-xopenalex-snapshot

Repbase Update: a database and an electronic journal of repetitive elements

inferredcites →https://doi.org/10.1016/s0168-9525(97)01359-0openalex-snapshot

Retroelements in the human MHC class II region

inferredcites →https://doi.org/10.1016/s0198-8859(96)00155-3openalex-snapshot

HLA-DRB intron 1 sequences: Implications for the evolution of HLA-DRB genes and haplotypes

inferredcites →https://doi.org/10.1034/j.1600-065x.2001.1830106.xopenalex-snapshot

Differential evolutionary MHC class II strategies in humans and rhesus macaques: relevance for biomedical studies

inferredcites →https://doi.org/10.1038/nature02564openalex-snapshot

DNA sequence and comparative analysis of chimpanzee chromosome 22

inferredcites →https://doi.org/10.1046/j.1365-3083.1997.d01-428.xopenalex-snapshot

HLA‐DRB9— Possible Remnant of an Ancient Functional DRB Subregion

inferredcites →https://doi.org/10.1073/pnas.0307885100openalex-snapshot

Human endogenous retrovirus K solo-LTR formation and insertional polymorphisms: Implications for human and viral evolution

inferredcites →https://doi.org/10.1073/pnas.0404838101openalex-snapshot

Retroelements and the human genome: New perspectives on an old relation

inferredcites →https://doi.org/10.1073/pnas.0600643103openalex-snapshot

Reactivation by exon shuffling of a conserved HLA-DR3 -like pseudogene segment in a New World primate species

inferredcites →https://doi.org/10.1073/pnas.0603224103openalex-snapshot

Emergence of primate genes by retrotransposon-mediated sequence transduction

inferredcites →https://doi.org/10.1073/pnas.82.15.5165openalex-snapshot

Structural organization of the DR subregion of the human major histocompatibility complex.

inferredcites →https://doi.org/10.1073/pnas.82.5.1475openalex-snapshot

Characterization of an HLA DR beta pseudogene.

inferredcites →https://doi.org/10.1073/pnas.83.8.2642openalex-snapshot

Molecular diversity of HLA-DR4 haplotypes.

inferredcites →https://doi.org/10.1073/pnas.90.10.4480openalex-snapshot

Identification of human endogenous retroviruses with complex mRNA expression and particle formation.

inferredcites →https://doi.org/10.1073/pnas.90.22.10720openalex-snapshot

Resolution of the HLA-DRB6 puzzle: a case of grafting a de novo-generated exon on an existing gene.

inferredcites →https://doi.org/10.1073/pnas.95.20.11745openalex-snapshot

The common marmoset: A new world primate species with limited Mhc class II variability

inferredcites →https://doi.org/10.1093/bioinformatics/14.9.817openalex-snapshot

MODELTEST: testing the model of DNA substitution.

inferredcites →https://doi.org/10.1093/molbev/msg050openalex-snapshot

Estimation of Divergence Times for Major Lineages of Primate Species

inferredcites →https://doi.org/10.1093/nar/gkg070openalex-snapshot

IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex

inferredcites →https://doi.org/10.1099/0022-1317-78-7-1731openalex-snapshot

Structure and genomic organization of a novel human endogenous retrovirus family: HERV-K (HML-6).

inferredcites →https://doi.org/10.1101/gr.2134504openalex-snapshot

Genetic Divergence of the Rhesus Macaque Major Histocompatibility Complex

inferredcites →https://doi.org/10.1101/gr.282402openalex-snapshot

Mammalian Retroelements

inferredcites →https://doi.org/10.1101/gr.3737405openalex-snapshot

Comparing the human and chimpanzee genomes: Searching for needles in a haystack

inferredcites →https://doi.org/10.1101/gr.388902openalex-snapshot

Retroelement Distributions in the Human Genome: Variations Associated With Age and Proximity to Genes

inferredcites →https://doi.org/10.1101/gr.3910705openalex-snapshot

Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates

inferredcites →https://doi.org/10.1101/gr.5565706openalex-snapshot

Identification of an infectious progenitor for the multiple-copy HERV-K human endogenous retroelements

inferredcites →https://doi.org/10.1111/j.0001-2815.2004.0222.xopenalex-snapshot

MhcDRB‐sequences from cynomolgus macaques (Macaca fascicularis) of different origin

inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03716.xopenalex-snapshot

Pinpointing a selective sweep to the chimpanzee MHC class I region by comparative genomics

inferredcites →https://doi.org/10.1111/j.1600-065x.1990.tb00037.xopenalex-snapshot

Evolution of the Class II Major Histocompatibility Complex Alleles in Higher Primates

inferredcites →https://doi.org/10.1111/j.1600-065x.1995.tb00669.xopenalex-snapshot

Evolution of Major Histocompatibility Complex Polymorphisms and T‐Cell Receptor Diversity in Primates

inferredcites →https://doi.org/10.1111/j.1600-065x.1995.tb00671.xopenalex-snapshot

Class II B Mhc Motifs in an Evolutionary Perspective

inferredcites →https://doi.org/10.1111/j.1600-065x.1999.tb01403.xopenalex-snapshot

Major histocompatibility complex class II polymorphisms in primates

inferredcites →https://doi.org/10.1126/science.1089670openalex-snapshot

Mobile Elements: Drivers of Genome Evolution

inferredcites →https://doi.org/10.1126/science.1140579openalex-snapshot

Restriction of an Extinct Retrovirus by the Human TRIM5α Antiviral Protein

inferredcites →https://doi.org/10.1128/jvi.72.12.9782-9787.1998openalex-snapshot

Human-Specific Integrations of the HERV-K Endogenous Retrovirus Family

inferredcites →https://doi.org/10.1128/jvi.79.11.6997-7004.2005openalex-snapshot

Paleogenomic Record of the Extinction of Human Endogenous Retrovirus ERV9

inferredcites →https://doi.org/10.1128/jvi.79.5.2941-2949.2005openalex-snapshot

Human Endogenous Retrovirus HERV-K14 Families: Status, Variants, Evolution, and Mobilization of Other Cellular Sequences

inferredcites →https://doi.org/10.1146/annurev.genom.5.061903.180040openalex-snapshot

COMPARATIVE PRIMATE GENOMICS

inferredcites →https://doi.org/10.1146/annurev.genom.7.080505.115700openalex-snapshot

The Evolutionary Dynamics of Human Endogenous Retroviral Families

inferredcites →https://doi.org/10.1159/000084951openalex-snapshot

ERVK9, transposons and the evolution of MHC class I duplicons within the alpha-block of the human and chimpanzee

inferredcites →https://doi.org/10.1159/000084964openalex-snapshot

Human endogenous retroviruses: from infectious elements to human genes

inferredcites →https://doi.org/10.1182/blood-2004-07-2596openalex-snapshot

Negative thymocyte selection to HERV-K18 superantigens in humans

inferredcites →https://doi.org/10.1186/1471-2105-7-474openalex-snapshot

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor

inferredcites →https://doi.org/10.1186/1742-4690-1-32openalex-snapshot

Identification of endogenous retroviral reading frames in the human genome

inferredcites →https://doi.org/10.1186/gb-2006-7-9-r86openalex-snapshot

Multiple effects govern endogenous retrovirus survival patterns in human gene introns

inferredcites →https://doi.org/10.1371/journal.pgen.0030150openalex-snapshot

The Inheritance of Resistance Alleles in Multiple Sclerosis

inferredcites →https://doi.org/10.4049/jimmunol.146.12.4368openalex-snapshot

Genetic diversity at class II DRB loci of the primate MHC

inferredcites →https://doi.org/10.4049/jimmunol.152.5.2298openalex-snapshot

Expansion and contraction of rhesus macaque DRB regions by duplication and deletion.

inferredcites →https://doi.org/10.4049/jimmunol.159.12.6044openalex-snapshot

Complex origin of the HLA-DR10 haplotype

inferredcites →https://doi.org/10.4049/jimmunol.164.6.3193openalex-snapshot

Unprecedented Polymorphism of Mhc - DRB Region Configurations in Rhesus Macaques

inferredcites →https://doi.org/10.4049/jimmunol.179.2.1210openalex-snapshot

The Human Endogenous Retrovirus Envelope Glycoprotein, Syncytin-1, Regulates Neuroinflammation and Its Receptor Expression in Multiple Sclerosis: A Role for Endoplasmic Reticulum Chaperones in Astrocytes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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COVID-19: History of Disease Avoidance, Social Spacing and Work/Home Matrix

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Transposable Element Mediated Innovation in Gene Regulatory Landscapes of Cells: Re‐Visiting the “Gene‐Battery” Model

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Reassessing the role of HLA‐DRB3 T‐cell responses: Evidence for significant expression and complementary antigen presentation

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Beneficial and detrimental effects of human endogenous retroviruses

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Viruses and Host Evolution: Virus-Mediated Self Identity

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Horizontal Gene Transfers with or without Cell Fusions in All Categories of the Living Matter

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Comparative genetics of a highly divergent DRB microsatellite in different macaque species

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Extensive DRB region diversity in cynomolgus macaques: recombination as a driving force

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Differential recombination dynamics within the MHC of macaque species

inferred← citeshttps://doi.org/10.1007/s00251-018-1053-7openalex-snapshot

MHC class I diversity of olive baboons (Papio anubis) unravelled by next-generation sequencing

inferred← citeshttps://doi.org/10.1007/s10709-011-9577-xopenalex-snapshot

Different transcription activity of HERV-K LTR-containing and LTR-lacking genes of the KIAA1245/NBPF gene subfamily

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Genomic environment and digital expression of bovine endogenous retroviruses

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Endogenized viral sequences in mammals

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The chimpanzee Mhc-DRB region revisited: Gene content, polymorphism, pseudogenes, and transcripts

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Variation in the major histocompatibility complex [MHC] gene family in schizophrenia: Associations and functional implications

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Transposons in the MHC: the Yin and Yang of the vertebrate immune system

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Evidence for the dissemination of cryptic non-coding RNAs transcribed from intronic and intergenic segments by retroposition

inferred← citeshttps://doi.org/10.1093/molbev/msad069openalex-snapshot

Transposable Element Interactions Shape the Ecology of the Deer Mouse Genome

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Evolution of HLA-DRB Genes

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Antagonistic Coevolution of MER Tyrosine Kinase Expression and Function

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Unravelling the architecture of Major Histocompatibility Complex class II haplotypes in rhesus macaques

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Unraveling the architecture of major histocompatibility complex class II haplotypes in rhesus macaques

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The role of molecular mimicry and other factors in the association of Human Endogenous Retroviruses and autoimmunity

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Comparative genetics of the major histocompatibility complex in humans and nonhuman primates

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High resolution definition of HLA‐DRB haplotypes by a simplified microsatellite typing technique

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The Source of Self

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Comprehensive Characterization of the Human Endogenous Retrovirus HERV-K(HML-6) Group: Overview of Structure, Phylogeny, and Contribution to the Human Genome

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RNA-Seq Transcriptome Analysis Reveals Long Terminal Repeat Retrotransposon Modulation in Human Peripheral Blood Mononuclear Cells after In Vivo Lipopolysaccharide Injection

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Switching Sides: How Endogenous Retroviruses Protect Us from Viral Infections

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Compound Evolutionary History of the Rhesus Macaque Mhc Class I B Region Revealed by Microsatellite Analysis and Localization of Retroviral Sequences

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Haplotype Shuffling and Dimorphic Transposable Elements in the Human Extended Major Histocompatibility Complex Class II Region

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Viral Ancestors of Antiviral Systems

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COVID-19: The Ethno-Geographic Perspective of Differential Immunity

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Covid-19, Isolation, Mammalian Dispersal Patterns, Urban Density, Social Distancing and Mass Psychogenic Disease

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Trans-species polymorphism, HLA-disease associations and the evolution of the MHC

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