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Remarkable Lethal G-to-A Mutations in vif- Proficient HIV-1 Provirus by Individual APOBEC3 Proteins in Humanized Mice

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.bbrc.2005.12.192openalex-snapshot

Anti-viral protein APOBEC3G is induced by interferon-α stimulation in human hepatocytes

inferredcites →https://doi.org/10.1016/j.cub.2004.06.050openalex-snapshot

APOBEC3F Properties and Hypermutation Preferences Indicate Activity against HIV-1 In Vivo

inferredcites →https://doi.org/10.1016/j.cub.2004.06.057openalex-snapshot

Cytidine Deamination of Retroviral DNA by Diverse APOBEC Proteins

inferredcites →https://doi.org/10.1016/j.virol.2005.06.005openalex-snapshot

Human APOBEC3B is a potent inhibitor of HIV-1 infectivity and is resistant to HIV-1 Vif

inferredcites →https://doi.org/10.1016/j.virol.2005.10.028openalex-snapshot

Ubiquitination of APOBEC3 proteins by the Vif–Cullin5–ElonginB–ElonginC complex

inferredcites →https://doi.org/10.1016/j.virol.2009.08.011openalex-snapshot

Selective infection of CD4+ effector memory T lymphocytes leads to preferential depletion of memory T lymphocytes in R5 HIV-1-infected humanized NOD/SCID/IL-2Rγnull mice

inferredcites →https://doi.org/10.1016/s0092-8674(03)00423-9openalex-snapshot

DNA Deamination Mediates Innate Immunity to Retroviral Infection

inferredcites →https://doi.org/10.1016/s1097-2765(03)00353-8openalex-snapshot

HIV-1 Vif Blocks the Antiviral Activity of APOBEC3G by Impairing Both Its Translation and Intracellular Stability

inferredcites →https://doi.org/10.1017/s1462399409001343openalex-snapshot

Interactions of host APOBEC3 restriction factors with HIV-1 in vivo: implications for therapeutics

inferredcites →https://doi.org/10.1038/nature01707openalex-snapshot

The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA

inferredcites →https://doi.org/10.1038/nature01709openalex-snapshot

Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts

inferredcites →https://doi.org/10.1038/nm945openalex-snapshot

The antiretroviral enzyme APOBEC3G is degraded by the proteasome in response to HIV-1 Vif

inferredcites →https://doi.org/10.1038/nm946openalex-snapshot

HIV-1 Vif protein binds the editing enzyme APOBEC3G and induces its degradation

inferredcites →https://doi.org/10.1038/nsmb.1495openalex-snapshot

Hypermutation by intersegmental transfer of APOBEC3G cytidine deaminase

inferredcites →https://doi.org/10.1038/nsmb0509-454openalex-snapshot

Mechanisms of APOBEC3G-catalyzed processive deamination of deoxycytidine on single-stranded DNA

inferredcites →https://doi.org/10.1038/nsmb758openalex-snapshot

Single-strand specificity of APOBEC3G accounts for minus-strand deamination of the HIV genome

inferredcites →https://doi.org/10.1038/sj.emboj.7600246openalex-snapshot

A second human antiretroviral factor, APOBEC3F, is suppressed by the HIV‐1 and HIV‐2 Vif proteins

inferredcites →https://doi.org/10.1073/pnas.0710190105openalex-snapshot

Cytidine deamination induced HIV-1 drug resistance

inferredcites →https://doi.org/10.1073/pnas.87.16.6019openalex-snapshot

Broad spectrum of in vivo forward mutations, hypermutations, and mutational hotspots in a retroviral shuttle vector after a single replication cycle: substitutions, frameshifts, and hypermutations.

inferredcites →https://doi.org/10.1074/jbc.c300376200openalex-snapshot

The Enzymatic Activity of CEM15/Apobec-3G Is Essential for the Regulation of the Infectivity of HIV-1 Virion but Not a Sole Determinant of Its Antiviral Activity

inferredcites →https://doi.org/10.1074/jbc.c500082200openalex-snapshot

Ubiquitination of APOBEC3G by an HIV-1 Vif-Cullin5-Elongin B-Elongin C Complex Is Essential for Vif Function

inferredcites →https://doi.org/10.1074/jbc.m408802200openalex-snapshot

APOBEC3B and APOBEC3C Are Potent Inhibitors of Simian Immunodeficiency Virus Replication

inferredcites →https://doi.org/10.1089/aid.1993.9.833openalex-snapshot

A New Type of G→A Hypermutation Affecting Human Immunodeficiency Virus

inferredcites →https://doi.org/10.1089/aid.2008.0072openalex-snapshot

The Level of APOBEC3G (hA3G)-Related G-to-A Mutations Does Not Correlate with Viral Load in HIV Type 1-Infected Individuals

inferredcites →https://doi.org/10.1093/nar/20.18.4933openalex-snapshot

Efficient amplification of HIV half-genomes from tissue DNA

inferredcites →https://doi.org/10.1093/nar/gki343openalex-snapshot

Mutational comparison of the single-domained APOBEC3C and double-domained APOBEC3F/G anti-retroviral cytidine deaminases provides insight into their DNA target site specificities

inferredcites →https://doi.org/10.1093/nar/gkl555openalex-snapshot

Twin gradients in APOBEC3 edited HIV-1 DNA reflect the dynamics of lentiviral replication

inferredcites →https://doi.org/10.1099/0022-1317-83-4-801openalex-snapshot

Sustained G→A hypermutation during reverse transcription of an entire human immunodeficiency virus type 1 strain Vau group O genome

inferredcites →https://doi.org/10.1126/science.1083338openalex-snapshot

Hypermutation of HIV-1 DNA in the Absence of the Vif Protein

inferredcites →https://doi.org/10.1126/science.1089591openalex-snapshot

Induction of APOBEC3G Ubiquitination and Degradation by an HIV-1 Vif-Cul5-SCF Complex

inferredcites →https://doi.org/10.1126/science.3646751openalex-snapshot

Dual Infection of the Central Nervous System by AIDS Viruses with Distinct Cellular Tropisms

inferredcites →https://doi.org/10.1128/jcm.43.1.406-413.2005openalex-snapshot

Multiple, Linked Human Immunodeficiency Virus Type 1 Drug Resistance Mutations in Treatment-Experienced Patients Are Missed by Standard Genotype Analysis

inferredcites →https://doi.org/10.1128/jvi.00272-07openalex-snapshot

Human Immunodeficiency Virus Type 1 cDNAs Produced in the Presence of APOBEC3G Exhibit Defects in Plus-Strand DNA Transfer and Integration

inferredcites →https://doi.org/10.1128/jvi.00280-09openalex-snapshot

Analysis of the Percentage of Human Immunodeficiency Virus Type 1 Sequences That Are Hypermutated and Markers of Disease Progression in a Longitudinal Cohort, Including One Individual with a Partially Defective Vif

inferredcites →https://doi.org/10.1128/jvi.00888-06openalex-snapshot

Population Level Analysis of Human Immunodeficiency Virus Type 1 Hypermutation and Its Relationship with APOBEC3G and vif Genetic Variation

inferredcites →https://doi.org/10.1128/jvi.01044-07openalex-snapshot

Modulation of Human Immunodeficiency Virus Type 1 Infectivity through Incorporation of Tetraspanin Proteins

inferredcites →https://doi.org/10.1128/jvi.01115-08openalex-snapshot

Human Immunodeficiency Virus (HIV) Type 1 Proviral Hypermutation Correlates with CD4 Count in HIV-Infected Women from Kenya

inferredcites →https://doi.org/10.1128/jvi.01123-06openalex-snapshot

Identification of APOBEC3DE as Another Antiretroviral Factor from the Human APOBEC Family

inferredcites →https://doi.org/10.1128/jvi.01533-07openalex-snapshot

Role of APOBEC3G/F-Mediated Hypermutation in the Control of Human Immunodeficiency Virus Type 1 in Elite Suppressors

inferredcites →https://doi.org/10.1128/jvi.01665-08openalex-snapshot

Polymorphisms and Splice Variants Influence the Antiretroviral Activity of Human APOBEC3H

inferredcites →https://doi.org/10.1128/jvi.02180-09openalex-snapshot

Evolution of the HIV-1 env Gene in the Rag2 −/− γ C −/− Humanized Mouse Model

inferredcites →https://doi.org/10.1128/jvi.02584-06openalex-snapshot

Cytidine Deaminases APOBEC3G and APOBEC3F Interact with Human Immunodeficiency Virus Type 1 Integrase and Inhibit Proviral DNA Formation

inferredcites →https://doi.org/10.1128/jvi.02660-07openalex-snapshot

Deciphering Human Immunodeficiency Virus Type 1 Transmission and Early Envelope Diversification by Single-Genome Amplification and Sequencing

inferredcites →https://doi.org/10.1128/jvi.64.12.5840-5850.1990openalex-snapshot

Analysis of sequence diversity in hypervariable regions of the external glycoprotein of human immunodeficiency virus type 1

inferredcites →https://doi.org/10.1128/jvi.65.4.1779-1788.1991openalex-snapshot

Selection, recombination, and G----A hypermutation of human immunodeficiency virus type 1 genomes

inferredcites →https://doi.org/10.1128/jvi.65.8.3973-3985.1991openalex-snapshot

Molecular characterization of human immunodeficiency virus type 1 cloned directly from uncultured human brain tissue: identification of replication-competent and -defective viral genomes

inferredcites →https://doi.org/10.1128/jvi.69.8.5087-5094.1995openalex-snapshot

Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase

inferredcites →https://doi.org/10.1128/jvi.71.11.8456-8466.1997openalex-snapshot

Mutational analysis of human immunodeficiency virus type 1 (HIV-1) accessory genes: requirement of a site in the nef gene for HIV-1 replication in activated CD4+ T cells in vitro and in vivo

inferredcites →https://doi.org/10.1128/jvi.75.17.7973-7986.2001openalex-snapshot

Human Immunodeficiency Virus Type 1 DNA Sequences Genetically Damaged by Hypermutation Are Often Abundant in Patient Peripheral Blood Mononuclear Cells and May Be Generated during Near-Simultaneous Infection and Activation of CD4 + T Cells

inferredcites →https://doi.org/10.1128/jvi.79.3.1975-1980.2005openalex-snapshot

G→A Hypermutation in Protease and Reverse Transcriptase Regions of Human Immunodeficiency Virus Type 1 Residing in Resting CD4 + T Cells In Vivo

inferredcites →https://doi.org/10.1128/jvi.80.3.1067-1076.2006openalex-snapshot

Role and Mechanism of Action of the APOBEC3 Family of Antiretroviral Resistance Factors

inferredcites →https://doi.org/10.1146/annurev.immunol.26.021607.090350openalex-snapshot

The APOBEC3 Cytidine Deaminases: An Innate Defensive Network Opposing Exogenous Retroviruses and Endogenous Retroelements

inferredcites →https://doi.org/10.1182/blood-2001-12-0207openalex-snapshot

NOD/SCID/γcnull mouse: an excellent recipient mouse model for engraftment of human cells

inferredcites →https://doi.org/10.1186/1742-4690-5-26openalex-snapshot

Turning up the volume on mutational pressure: Is more of a good thing always better? (A case study of HIV-1 Vif and APOBEC3)

inferredcites →https://doi.org/10.1186/1742-4690-6-16openalex-snapshot

APOBEC3G induces a hypermutation gradient: purifying selection at multiple steps during HIV-1 replication results in levels of G-to-A mutations that are high in DNA, intermediate in cellular viral RNA, and low in virion RNA

inferredcites →https://doi.org/10.1186/1742-4690-6-53openalex-snapshot

Comparative study on the effect of human BST-2/Tetherin on HIV-1 release in cells of various species

inferredcites →https://doi.org/10.1371/journal.ppat.0010006openalex-snapshot

Natural Variation in Vif: Differential Impact on APOBEC3G/3F and a Potential Role in HIV-1 Diversification

inferredcites →https://doi.org/10.1371/journal.ppat.1000367openalex-snapshot

Likely Role of APOBEC3G-Mediated G-to-A Mutations in HIV-1 Evolution and Drug Resistance

inferredcites →https://doi.org/10.1371/journal.ppat.1000414openalex-snapshot

HIV Evolution in Early Infection: Selection Pressures, Patterns of Insertion and Deletion, and the Impact of APOBEC

inferredcites →https://doi.org/10.2174/138955708783744047openalex-snapshot

Cytidine Deaminases as a Weapon Against Retroviruses and a New Target for Antiviral Therapy

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Infectious diseases in humanized mice

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Host Factor-Mediated Resistance to HIV-1 Infection

inferred← citeshttps://doi.org/10.1007/978-3-030-28151-9_6openalex-snapshot

Regulation of Antiviral Innate Immunity Through APOBEC Ribonucleoprotein Complexes

inferred← citeshttps://doi.org/10.1007/s00439-016-1678-2openalex-snapshot

TALEN gene editing takes aim on HIV

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Current humanized mouse models for studying human immunology and HIV-1 immuno-pathogenesis

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Two-step evolution of HIV-1 budding system leading to pandemic in the human population

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Human-Specific Adaptations in Vpu Conferring Anti-tetherin Activity Are Critical for Efficient Early HIV-1 Replication In Vivo

inferred← citeshttps://doi.org/10.1016/j.heliyon.2019.e01498openalex-snapshot

Role of co-expressed APOBEC3F and APOBEC3G in inducing HIV-1 drug resistance

inferred← citeshttps://doi.org/10.1016/j.jmb.2011.03.058openalex-snapshot

Multifaceted Counter-APOBEC3G Mechanisms Employed by HIV-1 Vif

inferred← citeshttps://doi.org/10.1016/j.jmb.2013.10.033openalex-snapshot

Multiple APOBEC3 Restriction Factors for HIV-1 and One Vif to Rule Them All

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Quantifying the antiviral effect of APOBEC3 on HIV-1 infection in humanized mouse model

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A New Class of Antiretroviral Enabling Innate Immunity by Protecting APOBEC3 from HIV Vif-Dependent Degradation

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APOBEC3G: a double agent in defense

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New generation humanized mice for virus research: Comparative aspects and future prospects

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HIV-1 immunopathogenesis in humanized mouse models

inferred← citeshttps://doi.org/10.1038/ncomms7945openalex-snapshot

ASK1 restores the antiviral activity of APOBEC3G by disrupting HIV-1 Vif-mediated counteraction

inferred← citeshttps://doi.org/10.1038/s41598-017-07307-4openalex-snapshot

Dynamics and mechanisms of clonal expansion of HIV-1-infected cells in a humanized mouse model

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Experimental evaluation of the zoonotic infection potency of simian retrovirus type 4 using humanized mouse model

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Translational regulation of APOBEC3G mRNA by Vif requires its 5′UTR and contributes to restoring HIV-1 infectivity

inferred← citeshttps://doi.org/10.1074/jbc.ra117.001444openalex-snapshot

HIV-1 Vpr hijacks EDD-DYRK2-DDB1DCAF1 to disrupt centrosome homeostasis

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Humanized mouse as an appropriate model for accelerated global HIV research and vaccine development: current trend

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HIV-1 APOBEC-context Mutations Detected by Next-Generation Sequencing in Plasma: Implications for Drug Resistance Interpretation

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A doxycycline-dependent human immunodeficiency virus type 1 replicates in vivo without inducing CD4+ T-cell depletion

inferred← citeshttps://doi.org/10.1101/2021.01.13.426487openalex-snapshot

A conserved uORF impacts APOBEC3G translation and is essential for translational inhibition by the HIV-1 Vif protein

inferred← citeshttps://doi.org/10.1111/1348-0421.12371openalex-snapshot

Species‐specific differences in the ability of feline lentiviral Vif to degrade feline APOBEC3 proteins

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HIV‐1 tracing method of systemic viremia in vivo using an artificially mutated virus pool

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Transcriptional regulation of APOBEC3 antiviral immunity through the CBF-β/RUNX axis

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Rapid Evolution of HIV-1 to Functional CD8 + T Cell Responses in Humanized BLT Mice

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Quantification of Deaminase Activity-Dependent and -Independent Restriction of HIV-1 Replication Mediated by APOBEC3F and APOBEC3G through Experimental-Mathematical Investigation

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Intercompartmental Recombination of HIV-1 Contributes toenvIntrahost Diversity and Modulates Viral Tropism and Sensitivity to Entry Inhibitors

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APOBEC3G Restricts HIV-1 to a Greater Extent than APOBEC3F and APOBEC3DE in Human Primary CD4 + T Cells and Macrophages

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Accessory Genes Confer a High Replication Rate to Virulent Feline Immunodeficiency Virus

inferred← citeshttps://doi.org/10.1128/jvi.01543-19openalex-snapshot

Impact of Suboptimal APOBEC3G Neutralization on the Emergence of HIV Drug Resistance in Humanized Mice

inferred← citeshttps://doi.org/10.1128/jvi.01606-24openalex-snapshot

Variability in HIV-1 transmitted/founder virus susceptibility to combined APOBEC3F and APOBEC3G host restriction

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Experimental Adaptive Evolution of Simian Immunodeficiency Virus SIVcpz to Pandemic Human Immunodeficiency Virus Type 1 by Using a Humanized Mouse Model

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Evaluation of HIV-1 Latency Reversal and Antibody-Dependent Viral Clearance by Quantification of Singly Spliced HIV-1 vpu / env mRNA

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Mechanism of Enhanced HIV Restriction by Virion Coencapsidated Cytidine Deaminases APOBEC3F and APOBEC3G

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APOBEC3G and APOBEC3F Act in Concert To Extinguish HIV-1 Replication

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APOBEC1-Mediated Editing and Attenuation of Herpes Simplex Virus 1 DNA Indicate That Neurons Have an Antiviral Role during Herpes Simplex Encephalitis

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Vpu Augments the Initial Burst Phase of HIV-1 Propagation and Downregulates BST2 and CD4 in Humanized Mice

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Mutator effects and mutation signatures of editing deaminases produced in bacteria and yeast

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Complex Codon Usage Pattern and Compositional Features of Retroviruses

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A novel animal model of Epstein-Barr virus–associated hemophagocytic lymphohistiocytosis in humanized mice

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Improving the estimation of the death rate of infected cells from time course data during the acute phase of virus infections: application to acute HIV-1 infection in a humanized mouse model

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The utility of the new generation of humanized mice to study HIV-1 infection: transmission, prevention, pathogenesis, and treatment

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Increased APOBEC3G and APOBEC3F expression is associated with low viral load and prolonged survival in simian immunodeficiency virus infected rhesus monkeys

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Quantification system for the viral dynamics of a highly pathogenic simian/human immunodeficiency virus based on an in vitroexperiment and a mathematical model

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Quantifying the effect of Vpu on the promotion of HIV-1 replication in the humanized mouse model

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A conflict of interest: the evolutionary arms race between mammalian APOBEC3 and lentiviral Vif

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Replacement of feline foamy virus bet by feline immunodeficiency virus vif yields replicative virus with novel vaccine candidate potential

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Modeling HIV-associated neurocognitive disorders in mice: new approaches in the changing face of HIV neuropathogenesis

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The mouse is out of the bag: insights and perspectives on HIV-1-infected humanized mouse models

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Antithetic effect of interferon-α on cell-free and cell-to-cell HIV-1 infection

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Effective Elicitation of Human Effector CD8+ T Cells in HLA-B*51:01 Transgenic Humanized Mice after Infection with HIV-1

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Is the tryptophan codon of gene vif the Achilles’ heel of HIV-1?

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HIV Restriction by APOBEC3 in Humanized Mice

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HIV-1 Vpr Accelerates Viral Replication during Acute Infection by Exploitation of Proliferating CD4+ T Cells In Vivo

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APOBEC3D and APOBEC3F Potently Promote HIV-1 Diversification and Evolution in Humanized Mouse Model

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HIV-1 competition experiments in humanized mice show that APOBEC3H imposes selective pressure and promotes virus adaptation

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Mechanisms for Inhibition of Retrovirus Replication by APOBEC3 Family

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Investigation of HIV-1 pathogenesis using humanized mouse model

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Norovirus replication and attenuation

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Type I Interferon Responses by HIV-1 Infection: Association with Disease Progression and Control

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Humanized Mice for the Evaluation of Novel HIV-1 Therapies

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Vpu and BST2: Still Not There Yet?

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Quantification of viral infection dynamics in animal experiments

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A Conserved uORF Regulates APOBEC3G Translation and Is Targeted by HIV-1 Vif Protein to Repress the Antiviral Factor

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The Role of APOBECs in Viral Replication

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Impacts of Humanized Mouse Models on the Investigation of HIV-1 Infection: Illuminating the Roles of Viral Accessory Proteins in Vivo

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Differential Dynamics of HIV Infection in Humanized MISTRG versus MITRG Mice

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Establishment of a Human Allergy Model Using Human IL-3/GM-CSF–Transgenic NOG Mice

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Modelling HIV infection and therapies in humanised mice

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Experimental Animal Models of HIV/AIDS for Vaccine Trials

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Contrôle traductionnel des facteurs de restriction APOBEC3G/F par la protéine Vif du VIH-1

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Translational inhibition of the restriction factor APOBEC3G (A3G) by the HIV-1 Vif protein : role of a uORF in the 5'-UTR of A3G mRNA and identification of cellular factors

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Cell-to-cell infection by HIV contributes over half of virus infection

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