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Spatial and Temporal Analysis of the Stomach and Small-Intestinal Microbiota in Fasted Healthy Humans
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Aminosalicylates for induction of remission or response in Crohn's disease
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Microbiota diversity and stability of the preterm neonatal ileum and colon of two infants
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Insights into the human oral microbiome
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A Shift from Colon- to Ileum-Predominant Bacteria in Ileal-Pouch Feces Following Total Proctocolectomy
inferredcites →https://doi.org/10.1016/j.biochi.2017.05.019openalex-snapshot
Impact of high-fat diet on the intestinal microbiota and small intestinal physiology before and after the onset of obesity
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Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features
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The Treatment-Naive Microbiome in New-Onset Crohn’s Disease
inferredcites →https://doi.org/10.1016/j.chom.2018.03.011openalex-snapshot
Small Intestine Microbiota Regulate Host Digestive and Absorptive Adaptive Responses to Dietary Lipids
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The small intestine microbiota, nutritional modulation and relevance for health
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Food, gastrointestinal pH, and models of oral drug absorption
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Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes
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Hypothesis testing and statistical analysis of microbiome
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Multisociety guideline on reprocessing flexible gastrointestinal endoscopes: 2011
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Management of Crohn's Disease After Surgical Resection
inferredcites →https://doi.org/10.1016/j.phrs.2012.10.020openalex-snapshot
The influence of diet on the gut microbiota
inferredcites →https://doi.org/10.1016/s0016-5085(73)80008-3openalex-snapshot
Gastric Emptying and Small Intestinal Propulsion in Fed and Fasted Rats
inferredcites →https://doi.org/10.1016/s0016-5085(82)80140-6openalex-snapshot
Effect of Gastric and Transpyloric Tubes on Gastric Emptying and Duodenogastric Reflux
inferredcites →https://doi.org/10.1021/acs.molpharmaceut.6b00641openalex-snapshot
Measurement of in vivo Gastrointestinal Release and Dissolution of Three Locally Acting Mesalamine Formulations in Regions of the Human Gastrointestinal Tract
inferredcites →https://doi.org/10.1038/ismej.2011.212openalex-snapshot
The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates
inferredcites →https://doi.org/10.1038/nmicrobiol.2016.267openalex-snapshot
The anti-inflammatory drug mesalamine targets bacterial polyphosphate accumulation
inferredcites →https://doi.org/10.1038/nrmicro3552openalex-snapshot
Gut biogeography of the bacterial microbiota
inferredcites →https://doi.org/10.1038/s41564-018-0143-5openalex-snapshot
Richness and ecosystem development across faecal snapshots of the gut microbiota
inferredcites →https://doi.org/10.1038/s41598-018-23198-5openalex-snapshot
Species Level Description of the Human Ileal Bacterial Microbiota
inferredcites →https://doi.org/10.1042/cs20171110openalex-snapshot
The intestinal microbiota in the pathogenesis of inflammatory bowel diseases: new insights into complex disease
inferredcites →https://doi.org/10.1046/j.1365-2672.2003.02005.xopenalex-snapshot
Molecular characterization of the microbial species that colonize human ileal and colonic mucosa by using 16S rDNA sequence analysis
inferredcites →https://doi.org/10.1053/j.gastro.2004.06.002openalex-snapshot
Postoperative maintenance of Crohn’s disease remission with 6-mercaptopurine, mesalamine, or placebo: A 2-year trial
inferredcites →https://doi.org/10.1073/pnas.0904847106openalex-snapshot
Human gut microbiome adopts an alternative state following small bowel transplantation
inferredcites →https://doi.org/10.1073/pnas.1000087107openalex-snapshot
Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
inferredcites →https://doi.org/10.1080/sta-200066418openalex-snapshot
A Similarity Measure Based on Species Proportions
inferredcites →https://doi.org/10.1093/bioinformatics/btr381openalex-snapshot
UCHIME improves sensitivity and speed of chimera detection
inferredcites →https://doi.org/10.1093/ecco-jcc/jjw157openalex-snapshot
Alterations of Enteric Microbiota in Patients with a Normal Ileal Pouch Are Predictive of Pouchitis
inferredcites →https://doi.org/10.1093/nar/gkm864openalex-snapshot
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
inferredcites →https://doi.org/10.1093/nar/gkn879openalex-snapshot
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
inferredcites →https://doi.org/10.1097/mib.0000000000000382openalex-snapshot
Recent Advances in Characterizing the Gastrointestinal Microbiome in Crohnʼs Disease
inferredcites →https://doi.org/10.1097/mog.0000000000000057openalex-snapshot
Bile acids and the gut microbiome
inferredcites →https://doi.org/10.1099/jmm.0.45935-0openalex-snapshot
Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism
inferredcites →https://doi.org/10.1099/mic.0.000496openalex-snapshot
Bacterial communities in the small intestine respond differently to those in the caecum and colon in mice fed low- and high-fat diets
inferredcites →https://doi.org/10.1111/1574-6941.12127openalex-snapshot
Diversity of human small intestinal Streptococcus and Veillonella populations
inferredcites →https://doi.org/10.1111/1574-6976.12076openalex-snapshot
Coping with low pH: molecular strategies in neutralophilic bacteria
inferredcites →https://doi.org/10.1111/j.1462-2920.2010.02294.xopenalex-snapshot
High temporal and inter‐individual variation detected in the human ileal microbiota
inferredcites →https://doi.org/10.1111/jgh.12694openalex-snapshot
Association between specific mucosa‐associated microbiota in Crohn's disease at the time of resection and subsequent disease recurrence: A pilot study
inferredcites →https://doi.org/10.1111/nyas.13127openalex-snapshot
The esophageal microbiota in health and disease
inferredcites →https://doi.org/10.1126/science.aan4834openalex-snapshot
Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania
inferredcites →https://doi.org/10.1126/scitranslmed.3003605openalex-snapshot
Temporal Dynamics of the Human Vaginal Microbiota
inferredcites →https://doi.org/10.1128/aem.01043-13openalex-snapshot
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
inferredcites →https://doi.org/10.1128/iai.00459-15openalex-snapshot
Fecal Microbiota Transplantation Eliminates Clostridium difficile in a Murine Model of Relapsing Disease
inferredcites →https://doi.org/10.1128/mspheredirect.00073-17openalex-snapshot
OptiClust, an Improved Method for Assigning Amplicon-Based Sequence Data to Operational Taxonomic Units
inferredcites →https://doi.org/10.1152/physrev.00045.2009openalex-snapshot
Gut Microbiota in Health and Disease
inferredcites →https://doi.org/10.1158/1940-6207.capr-17-0370openalex-snapshot
Spatial Variation of the Native Colon Microbiota in Healthy Adults
inferredcites →https://doi.org/10.1159/000016487openalex-snapshot
Analysis of pH–Driven Disruption of Oral Microbial Communities in vitro
inferredcites →https://doi.org/10.1159/000444436openalex-snapshot
Changes of Intestinal Functions in Liver Cirrhosis
inferredcites →https://doi.org/10.1159/000480231openalex-snapshot
Effectiveness of Mesalazine, Thiopurines and Tumour Necrosis Factor Antagonists in Preventing Post-Operative Crohn's Disease Recurrence in a Real-Life Setting
inferredcites →https://doi.org/10.1186/1471-230x-13-131openalex-snapshot
Association of gut microbiota with post-operative clinical course in Crohn’s disease
inferredcites →https://doi.org/10.1186/2049-2618-1-9openalex-snapshot
Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis
inferredcites →https://doi.org/10.1186/gb-2011-12-5-r50openalex-snapshot
Moving pictures of the human microbiome
inferredcites →https://doi.org/10.1371/journal.pcbi.1005706openalex-snapshot
Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment
inferredcites →https://doi.org/10.1371/journal.pone.0040758openalex-snapshot
Comprehensive Postmortem Analyses of Intestinal Microbiota Changes and Bacterial Translocation in Human Flora Associated Mice
inferredcites →https://doi.org/10.1371/journal.pone.0116894openalex-snapshot
The Vaginal Microbiota over an 8- to 10-Year Period in a Cohort of HIV-Infected and HIV-Uninfected Women
inferredcites →https://doi.org/10.1371/journal.pone.0137784openalex-snapshot
A Metagenomic Investigation of the Duodenal Microbiota Reveals Links with Obesity
inferredcites →https://doi.org/10.18637/jss.v067.i01openalex-snapshot
Fitting Linear Mixed-Effects Models Using lme4
inferredcites →https://doi.org/10.18637/jss.v082.i13openalex-snapshot
lmerTest Package: Tests in Linear Mixed Effects Models
inferredcites →https://doi.org/10.3109/00365521.2015.1018937openalex-snapshot
5-Aminosalicylic acid, a specific drug for ulcerative colitis
inferredcites →https://doi.org/10.7717/peerj.3437openalex-snapshot
Postmortem succession of gut microbial communities in deceased human subjects
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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The Digestion Profiles of Lipids with Different Unsaturated Levels Under the Treatment of Different Intestinal Microbiota
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Gut Microbiome in Health and Gastrointestinal Cancer
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Higher bacterial DNAemia can affect the impact of a polyphenol-rich dietary pattern on biomarkers of intestinal permeability and cardiovascular risk in older subjects
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Mapping the Segmental Microbiomes in the Human Small Bowel in Comparison with Stool: A REIMAGINE Study
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Phage therapy in gut microbiome
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Short-term high fat diet–induced metabolic endotoxemia in older individuals with obesity: a randomized crossover study
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Jejunum: The understudied meeting place of dietary lipids and the microbiota
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Regional Diversity of the Gastrointestinal Microbiome
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The intricate interplay between acute pancreatitis and small intestinal bacterial overgrowth: Unraveling the unknown
inferred← citeshttps://doi.org/10.1016/j.cmi.2020.08.021openalex-snapshot
The cultivable microbiota of the human distal ileum
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Interactions between H. pylori and the gastric microbiome: impact on gastric homeostasis and disease
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Comparative analysis of amino acid auxotrophies and peptidase profiles in non-dysbiotic and dysbiotic small intestinal microbiomes
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The digestion profiles of lipids with different unsaturated levels under the treatment of different intestinal bacteria
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Effects of monoglucoside and diglucoside anthocyanins from Yan 73 (Vitis vinifera L.) and spine grape (Vitis davidii Foex) skin on intestinal microbiota in vitro
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Methanobrevibacter smithii cell variants in human physiology and pathology: A review
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Intraintestinal fermentation of fructo- and galacto-oligosaccharides and the fate of short-chain fatty acids in humans
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Fluoroscopic control of a magnetorobotic capsule for precision gastrointestinal sampling and delivery
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Spatial heterogeneity of viral communities across the gastrointestinal tracts of ruminants
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Unveiling the role of functional foods with emphasis on prebiotics and probiotics in human health: A review
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Fecal microbiota transplantation: transitioning from chaos and controversial realm to scientific precision era
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Mucosa-associated microbiota in the jejunum of patients with morbid obesity: alterations in states of insulin resistance and metformin treatment
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Gut milieu shapes the bacterial communities of invasive silver carp
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The interconnection between dietary fibre, gut microbiome and psychological well-being
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Delving the depths of ‘terra incognita’ in the human intestine — the small intestinal microbiota
inferred← citeshttps://doi.org/10.1038/s41575-025-01092-6openalex-snapshot
Intestinal pH: a major driver of human gut microbiota composition and metabolism
inferred← citeshttps://doi.org/10.1038/s41579-023-00969-0openalex-snapshot
The gut microbiota and its biogeography
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Investigating the human jejunal microbiota
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Higher alpha diversity and Lactobacillus blooms are associated with better engraftment after fecal microbiota transplant in inflammatory bowel disease
inferred← citeshttps://doi.org/10.1038/s41598-025-15536-1openalex-snapshot
Small intestinal bacterial overgrowth as one of the diagnostic markers of hypertension
inferred← citeshttps://doi.org/10.1039/d3fo00268copenalex-snapshot
Lactobacillus paracasei influences the gut-microbiota-targeted metabolic modulation of the immune status of diarrheal mice
inferred← citeshttps://doi.org/10.1073/pnas.2413211122openalex-snapshot
Quantifying compositional variability in microbial communities with FAVA
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The emerging role of the small intestinal microbiota in human health and disease
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Spatio-temporal dynamics of the human small intestinal microbiome and its response to a synbiotic
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The duodenal microbiota is compartmentalized and clinically stable yet rapidly responsive to nutrient exposure
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Minimally invasive capsule-string device enables spatially resolved microbiome profiling across the upper gastrointestinal tract
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Using naso- and oro-intestinal catheters in physiological research for intestinal delivery and sampling in vivo: practical and technical aspects to be considered.
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The small intestine: dining table of host–microbiota meetings
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Investigating regional-specific gut microbial distribution: an uncharted territory in disease therapeutics
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Separation of the effects of small intestinal microbiome-diet interactions on human gut hormone secretion
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Metataxonomic analysis demonstrates a shift in duodenal microbiota in South African patients with obstructive jaundice: A pilot study
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Fructose catabolism and its metabolic effects: Exploring host–microbiota interactions and the impact of ethnicity
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Gut bacteria comparison between wild and captive neotropical otters
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Re-framing the importance of Group B Streptococcus as a gut-resident pathobiont
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Can Dietary Fatty Acids Affect the COVID-19 Infection Outcome in Vulnerable Populations?
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Bile acid fitness determinants of a Bacteroides fragilis isolate from a human pouchitis patient
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Differential alteration in Lactiplantibacillus plantarum subsp. plantarum quorum-sensing systems and reduced Candida albicans yeast survival and virulence gene expression in dual-species interaction
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Gut microbiome and health: mechanistic insights
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Investigation of Oral, Gastric, and Duodenal Microbiota in Patients with Upper Gastrointestinal Symptoms
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Sex Difference of Effect of Sophora flavescens on Gut Microbiota in Rats
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Duodenal microbiota and weight-loss following sleeve gastrectomy and Roux-en-Y gastric bypass – a pilot study
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Colonization resistance is dispensable for segregation of oral and gut microbiota
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Spatial heterogeneity of bacterial colonization across different gut segments following inter-species microbiota transplantation
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Self-reinoculation with fecal flora changes microbiota density and composition leading to an altered bile-acid profile in the mouse small intestine
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Type 2 Diabetes and the Microbiome
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The duodenal microbiome is altered in small intestinal bacterial overgrowth
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Metabolic Trifecta After Pancreatitis: Exocrine Pancreatic Dysfunction, Altered Gut Microbiota, and New-Onset Diabetes
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Impacts of pancreatic exocrine insufficiency on gut microbiota
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Modulating the human intestinal microbiome in healthy adults and elderly through dietary supplements
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Studies on non-digestible carbohydrates in the human intestine : Focus on kinetics of fermentation and degradation
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A Meta-analysis Reveals Gastric Microbes Associated with Atrophic Gastritis
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Spatial heterogeneity of viral communities across the gastrointestinal tracts of ruminants
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The uninvited guests of our microbiome: Helicobacter pylori and Epstein-Barr virus and their role in gastric cancerogenesis
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ABO and WCM biotypology: The secret of the holobiont
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Diversity of the microbiota communities found in the various regions of the intestinal tract in healthy individuals and inflammatory bowel diseases
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Emerging role of gut microbiota in autoimmune diseases
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Regionalization of intestinal microbiota and metabolites in the small intestine of the Bactrian camel
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Host Microbe Interactions in the Lactating Mammary Gland
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Short-Term Amoxicillin-Induced Perturbation of the Gut Microbiota Promotes Acute Intestinal Immune Regulation in Brown Norway Rats
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Development of a reproducible small intestinal microbiota model and its integration into the SHIME®-system, a dynamic in vitro gut model
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Gut microbiota contributes to the methionine metabolism in host
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Duodenal microbiota dysbiosis in functional dyspepsia and its potential role of the duodenal microbiota in gut–brain axis interaction: a systematic review
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1441126openalex-snapshot
Acute stress triggers sex-dependent rapid alterations in the human small intestine microbiota composition
inferred← citeshttps://doi.org/10.3390/cells9010180openalex-snapshot
Study of Melatonin as Preventive Agent of Gastrointestinal Damage Induced by Sodium Diclofenac
inferred← citeshttps://doi.org/10.3390/life12101505openalex-snapshot
Effect of a Proton Pump Inhibitor on the Duodenum Microbiome of Gastric Ulcer Patients
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Metataxonomic Analysis Demonstrates a Shift in Duodenal Microbiota in Patients with Obstructive Jaundice
inferred← citeshttps://doi.org/10.3390/microorganisms11092177openalex-snapshot
Revisiting the Intestinal Microbiome and Its Role in Diarrhea and Constipation
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Predicting Personalized Diets Based on Microbial Characteristics between Patients with Superficial Gastritis and Atrophic Gastritis
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The Microbiota Architecture of the Chinchilla Gastrointestinal Tract
inferred← citeshttps://doi.org/10.3892/mmr.2024.13281openalex-snapshot
Deciphering the spatiotemporal transcriptional landscape of intestinal diseases (Review)
inferred← citeshttps://doi.org/10.4018/979-8-3373-1365-8.ch010openalex-snapshot
Epigenetic Modulation by Gut Microbiota Metabolites
inferred← citeshttps://doi.org/10.51473/rcmos.v1i1.2026.1912openalex-snapshot
A Eficácia dos Probióticos na Atenuação dos Sintomas em Pacientes Infectados Com SARS-CoV-2: Uma Revisão Integrativa
inferred← citeshttps://doi.org/10.60087/jaigs.v3i1.68openalex-snapshot
Harnessing AI and Gut Microbiome Research for Precision Health
inferred← citeshttps://doi.org/10.6084/m9.figshare.26570578openalex-snapshot
Additional file 1 of Colonization resistance is dispensable for segregation of oral and gut microbiota
inferred← citeshttps://doi.org/10.6084/m9.figshare.26570581openalex-snapshot
Additional file 2 of Colonization resistance is dispensable for segregation of oral and gut microbiota
inferred← citeshttps://doi.org/10.6084/m9.figshare.26570584openalex-snapshot
Additional file 3 of Colonization resistance is dispensable for segregation of oral and gut microbiota
inferred← citeshttps://doi.org/10.6084/m9.figshare.26570587openalex-snapshot
Additional file 4 of Colonization resistance is dispensable for segregation of oral and gut microbiota
inferred← citeshttps://doi.org/10.70675/1d41e841zf788z4dd7z8784zc26304e24ea1openalex-snapshot
Implication des protéases du microbiote intestinal dans les maladies inflammatoires digestives humaines
inferred← citeshttps://doi.org/10.7704/kjhugr.2024.0059openalex-snapshot
Role of the Small Intestinal Microbiota in Gastrointestinal Disorders
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