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Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Glutamate: a truly functional amino acid
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Formation of Free Amino Acids and Bioactive Peptides During the Ripening of Bulgarian White Brined Cheeses
inferredcites →https://doi.org/10.1016/j.fm.2016.11.016openalex-snapshot
Dynamics of bacterial communities during manufacture and ripening of traditional Caciocavallo of Castelfranco cheese in relation to cows' feeding
inferredcites →https://doi.org/10.1016/j.fmrre.2005.04.002openalex-snapshot
Flavour formation by lactic acid bacteria and biochemical flavour profiling of cheese products
inferredcites →https://doi.org/10.1016/j.foodcont.2015.11.013openalex-snapshot
Microbial benefits and risks of raw milk cheese
inferredcites →https://doi.org/10.1016/j.foodres.2019.108729openalex-snapshot
Serra da Estrela cheese’s free amino acids profiles by UPLC-DAD-MS/MS and their application for cheese origin assessment
inferredcites →https://doi.org/10.1016/j.idairyj.2015.05.011openalex-snapshot
A review of the microbiological hazards of dairy products made from raw milk
inferredcites →https://doi.org/10.1016/j.ijfoodmicro.2007.12.025openalex-snapshot
The effect of cysteine on production of volatile sulphur compounds by cheese-ripening bacteria
inferredcites →https://doi.org/10.1016/j.ijfoodmicro.2014.02.019openalex-snapshot
Traditional cheeses: Rich and diverse microbiota with associated benefits
inferredcites →https://doi.org/10.1016/s0958-6946(01)00151-0openalex-snapshot
Microbes from raw milk for fermented dairy products
inferredcites →https://doi.org/10.1016/s0958-6946(98)00006-5openalex-snapshot
Possible implications of milk pasteurization on the manufacture and sensory quality of ripened cheese
inferredcites →https://doi.org/10.1038/nature24460openalex-snapshot
Quantitative microbiome profiling links gut community variation to microbial load
inferredcites →https://doi.org/10.1038/nmeth.3176openalex-snapshot
Fast and sensitive protein alignment using DIAMOND
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High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
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Colonization of the human gut by bovine bacteria present in Parmesan cheese
inferredcites →https://doi.org/10.1080/10408398.2010.547398openalex-snapshot
Fermented Milks and Milk Products as Functional Foods—A Review
inferredcites →https://doi.org/10.1080/10408398.2011.634531openalex-snapshot
Cheddar Cheese Ripening and Flavor Characterization: A Review
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PGAP: pan-genomes analysis pipeline
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The Sulfur-Containing Amino Acids: An Overview
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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
inferredcites →https://doi.org/10.1111/asj.12452openalex-snapshot
Effect of farm characteristics and practices on hygienic quality of ovine raw milk used for artisan cheese production in central Italy
inferredcites →https://doi.org/10.1111/j.1745-4549.2008.00262.xopenalex-snapshot
PRESENCE OF ENTEROCOCCI IN RAW COW'S MILK AND “PUZZONE DI MOENA” CHEESE
inferredcites →https://doi.org/10.1128/aem.00139-20openalex-snapshot
Ecology of Lactobacilli Present in Italian Cheeses Produced from Raw Milk
inferredcites →https://doi.org/10.1128/aem.06081-11openalex-snapshot
Biodiversity in Oscypek, a Traditional Polish Cheese, Determined by Culture-Dependent and -Independent Approaches
inferredcites →https://doi.org/10.1128/aem.67.5.2011-2020.2001openalex-snapshot
Characterization of Non-Starter Lactic Acid Bacteria from Italian Ewe Cheeses Based on Phenotypic, Genotypic, and Cell Wall Protein Analyses
inferredcites →https://doi.org/10.1128/jb.179.10.3133-3138.1997openalex-snapshot
Menaquinone (vitamin K2) biosynthesis: overexpression, purification, and characterization of a new isochorismate synthase from Escherichia coli
inferredcites →https://doi.org/10.1128/msystems.00583-21openalex-snapshot
METAnnotatorX2: a Comprehensive Tool for Deep and Shallow Metagenomic Data Set Analyses
inferredcites →https://doi.org/10.1146/annurev-food-030713-092339openalex-snapshot
Production of Aroma Compounds in Lactic Fermentations
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Book Review: GABA and Glutamate in the Human Brain
inferredcites →https://doi.org/10.1186/s40168-018-0527-zopenalex-snapshot
Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX
inferredcites →https://doi.org/10.1590/s0100-736x2017000900008openalex-snapshot
Pseudomonas spp.: contamination sources in bulk tanks of dairy farms
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sourmash: a library for MinHash sketching of DNA
inferredcites →https://doi.org/10.2174/1389200216666151015114515openalex-snapshot
Application of Glutathione as Anti-Oxidative and Anti-Aging Drugs
inferredcites →https://doi.org/10.2174/1871520614666141027144653openalex-snapshot
PreQ0 Base, an Unusual Metabolite with Anti-cancer Activity from Streptomyces qinglanensis 172205
inferredcites →https://doi.org/10.2903/j.efsa.2015.3940openalex-snapshot
Scientific Opinion on the public health risks related to the consumption of raw drinking milk
inferredcites →https://doi.org/10.3136/fstr.14.183openalex-snapshot
Sensory Properties and Taste Compounds of Fermented Milk Produced by Lactococcus lactis and Streptococcus thermophilus
inferredcites →https://doi.org/10.3168/jds.2014-8225openalex-snapshot
Microbiota characterization of a Belgian protected designation of origin cheese, Herve cheese, using metagenomic analysis
inferredcites →https://doi.org/10.3168/jds.2020-19172openalex-snapshot
Effect of probiotic Minas Frescal cheese on the volatile compound and metabolic profiles assessed by nuclear magnetic resonance spectroscopy and chemometric tools
inferredcites →https://doi.org/10.3168/jds.2020-19738openalex-snapshot
Feeding cows with hay, silage, or fresh herbage on pasture or indoors affects sensory properties and chemical composition of milk and cheese
inferredcites →https://doi.org/10.3168/jds.2020-19992openalex-snapshot
The key aroma compounds and sensory characteristics of commercial Cheddar cheeses
inferredcites →https://doi.org/10.3389/fmicb.2017.02158openalex-snapshot
Characterization of Pseudomonas spp. and Associated Proteolytic Properties in Raw Milk Stored at Low Temperatures
inferredcites →https://doi.org/10.3389/fmicb.2018.00637openalex-snapshot
Population Dynamics of Lactobacillus helveticus in Swiss Gruyère-Type Cheese Manufactured With Natural Whey Cultures
inferredcites →https://doi.org/10.3389/fmicb.2020.01794openalex-snapshot
Fermentation Characteristics of Lactococcus lactis subsp. lactis Isolated From Naturally Fermented Dairy Products and Screening of Potential Starter Isolates
inferredcites →https://doi.org/10.3390/foods10020258openalex-snapshot
Changes in Physicochemical and Microbiological Properties, Fatty Acid and Volatile Compound Profiles of Apuseni Cheese during Ripening
inferredcites →https://doi.org/10.3390/microorganisms10020283openalex-snapshot
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inferredcites →https://doi.org/10.3892/mmr.2021.12242openalex-snapshot
Protective role of taurine against oxidative stress (Review)
inferredcites →https://doi.org/10.3920/978-90-8686-766-0.025openalex-snapshot
25. Surface microbiota analysis of Italian cheeses
inferredcites →https://doi.org/10.4081/ijfs.2018.6967openalex-snapshot
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Folates: An Introduction
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Assessment of the Effects of Back Sloping on Some Starter Culture Strains and the Organoleptic Qualities of their Yoghurt Products

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4677283openalex-extracted
inferred← citeshttps://doi.org/10.5281/zenodo.14725519zenodo-depositor-declared
inferred← citeshttps://doi.org/10.1007/s11947-023-03311-xopenalex-snapshot
Screening of Aroma-Producing Performance of Anticlostridial Lacticaseibacillus casei Strains
inferred← citeshttps://doi.org/10.1016/j.crmicr.2025.100516openalex-snapshot
Exploring diversity and functional contribution of the microbiome of traditional Italian dry-cured hams
inferred← citeshttps://doi.org/10.1016/j.idairyj.2026.106821openalex-snapshot
Autochthonous lactic acid bacteria as candidate protective cultures for microbial control in raw milk cheeses: A critical scoping review of mechanistic evidence and bioprotective potential
inferred← citeshttps://doi.org/10.1016/j.ijfoodmicro.2023.110548openalex-snapshot
Comparative analysis of microbial succession and proteolysis focusing on amino acid pathways in Asiago-PDO cheese from two dairies
inferred← citeshttps://doi.org/10.1016/j.ijfoodmicro.2024.111014openalex-snapshot
Delving into Roccaverano PDO cheese: A comprehensive examination of microbial diversity and flavour profiles compared to non-PDO cheeses
inferred← citeshttps://doi.org/10.1016/j.lwt.2026.119983openalex-snapshot
Proteolysis patterns and biogenic amines content in bovine mozzarella manufactured from fresh milk or stored curd
inferred← citeshttps://doi.org/10.1038/s41467-024-52687-7openalex-snapshot
Genomic and phenotypic imprints of microbial domestication on cheese starter cultures
inferred← citeshttps://doi.org/10.1093/ismeco/ycae095openalex-snapshot
A comprehensive, large-scale analysis of “terroir” cheese and milk microbiota reveals profiles strongly shaped by both geographical and human factors
inferred← citeshttps://doi.org/10.1111/1462-2920.16626openalex-snapshot
Revealing the genetic traits of the foodborne microbial genus Hafnia : Implications for the human gut microbiome
inferred← citeshttps://doi.org/10.1128/aem.00180-25openalex-snapshot
Functional modulation of the human gut microbiome by bacteria vehicled by cheese
inferred← citeshttps://doi.org/10.1128/aem.01244-24openalex-snapshot
From raw milk cheese to the gut: investigating the colonization strategies of Bifidobacterium mongoliense
inferred← citeshttps://doi.org/10.1128/aem.01547-25openalex-snapshot
Host interactions of Lactococcus lactis and Streptococcus thermophilus support their adaptation to the human gut microbiota
inferred← citeshttps://doi.org/10.1128/msystems.00520-23openalex-snapshot
Should the microbiota of raw milk cheeses play a role in the definition of geographical indications and quality schemes within the European Union?
inferred← citeshttps://doi.org/10.1186/s40168-024-01980-0openalex-snapshot
Shotgun metagenomic sequencing reveals the influence of artisanal dairy environments on the microbiomes, quality, and safety of Idiazabal, a raw ewe milk PDO cheese
inferred← citeshttps://doi.org/10.1515/biol-2022-0983openalex-snapshot
Utility of dairy microbiome as a tool for authentication and traceability
inferred← citeshttps://doi.org/10.21203/rs.3.rs-3573518/v1openalex-snapshot
Screening of aroma-producing performance of anticlostridial Lacticaseibacillus casei strains for use as adjunct cultures in cheesemaking
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1342180openalex-snapshot
Cultivable microbial diversity, peptide profiles, and bio-functional properties in Parmigiano Reggiano cheese
inferred← citeshttps://doi.org/10.3390/dairy7030036openalex-snapshot
Delving into Enzyme-Encoding Genes in Metagenome Assembled Genomes from Artisanal Dairies Producing Raw Ewe Milk PDO Cheeses
inferred← citeshttps://doi.org/10.3390/fermentation11100552openalex-snapshot
From Raw to Fermented: Uncovering the Microbial Wealth of Dairy
inferred← citeshttps://doi.org/10.3390/foods14244236openalex-snapshot
A Machine Learning Model to Reframe the Concept of Shelf-Life in Bakery Products: PDO Sourdough as a Technological Preservation Model
inferred← citeshttps://doi.org/10.3390/foods15020259openalex-snapshot
Advances in Shotgun Metagenomics for Cheese Microbiology: From Microbial Dynamics to Functional Insights
inferred← citeshttps://doi.org/10.3390/foods15071160openalex-snapshot
Raw Milk Cheese Microbiomes: A Paradigm for Interactions of Lactic Acid Bacteria in Food Ecosystems
inferred← citeshttps://doi.org/10.3390/ijms27052426openalex-snapshot
Genomic Plasticity and Functional Reweighting Facilitate Microbial Adaptation During the Ripening of Artisanal Goat Cheese
inferred← citeshttps://doi.org/10.5281/zenodo.14725518openalex-snapshot
Consulted bibliography
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