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Genetic variability among strains of Phialocephala fortinii and phylogenetic analysis of the genus Phialocephala based on rDNA ITS sequence comparisons

https://doi.org/10.1139/b02-115
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Phylogenetic Origins of the Asexual Mycorrhizal SymbiontCenococcum geophilumFr. and Other Mycorrhizal Fungi among the Ascomycetes
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The Taxonomy of Anamorphic Fungi
inferredcites →https://doi.org/10.1007/978-94-011-0511-8_12openalex-snapshot
Extraction of total cellular DNA from plants, algae and fungi
inferredcites →https://doi.org/10.1007/978-94-017-6953-2openalex-snapshot
Plant Molecular Biology Manual
inferredcites →https://doi.org/10.1007/bf01731581openalex-snapshot
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
inferredcites →https://doi.org/10.1007/s001140050736openalex-snapshot
Phylogeny of filamentous ascomycetes
inferredcites →https://doi.org/10.1007/s005720050190openalex-snapshot
Mycorrhizal functioning of Phialocephala fortinii with Pinus contorta on glacier forefront soil: interactions with soil nitrogen and organic matter
inferredcites →https://doi.org/10.1016/b978-0-12-372180-8.50042-1openalex-snapshot
AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS
inferredcites →https://doi.org/10.1016/s0007-1536(81)80010-1openalex-snapshot
New or interesting microfungi
inferredcites →https://doi.org/10.1016/s0007-1536(87)80085-2openalex-snapshot
Reclassification of Phialocephala based on conidial development
inferredcites →https://doi.org/10.1016/s0022-5193(05)80104-3openalex-snapshot
The general stochastic model of nucleotide substitution
inferredcites →https://doi.org/10.1016/s0723-2020(97)80076-8openalex-snapshot
Ribosomal DNA Sequence Comparison of Leptographium lundbergii and L. truncatum and neotypification of L. lundbergii
inferredcites →https://doi.org/10.1016/s0723-2020(98)80053-2openalex-snapshot
Correspondence Analysis as a Tool in Fungal Taxonomy
inferredcites →https://doi.org/10.1016/s0953-7562(09)80524-8openalex-snapshot
Cryptosporiopsis radicicola sp. nov. from roots of Quercus robur
inferredcites →https://doi.org/10.1016/s0953-7562(09)80932-5openalex-snapshot
Fungal associations of serially washed healthy non-mycorrhizal roots of Picea abies
inferredcites →https://doi.org/10.1017/s0953756200002896openalex-snapshot
Distribution and molecular characterization of the root endophyte Phialocephala fortinii along an environmental gradient in the boreal forest of Alberta
inferredcites →https://doi.org/10.1017/s0953756200003658openalex-snapshot
Characterisation of dark septate endophytic fungi (DSE) using inter-simple-sequence-repeat-anchored polymerase chain reaction (ISSR-PCR) amplification
inferredcites →https://doi.org/10.1017/s0953756201003604openalex-snapshot
Intraspecific variation in Mycocalicium subtile (Mycocaliciaceae) elucidated by morphology and the sequences of the ITS1-5.8S-ITS2 region of rDNA
inferredcites →https://doi.org/10.1017/s0953756202005968openalex-snapshot
Spatial distribution of dark septate endophytes in a confined forest plot
inferredcites →https://doi.org/10.1017/s095375629700419xopenalex-snapshot
Molecular characterization of dematiaceous root endophytes
inferredcites →https://doi.org/10.1046/j.0028-646x.2001.00290.xopenalex-snapshot
Mycorrhizal synthesis between fungal strains of the Hymenoscyphus ericae aggregate and potential ectomycorrhizal and ericoid hosts
inferredcites →https://doi.org/10.1046/j.1439-0329.2000.00208.xopenalex-snapshot
Pathogenicity of fungi isolated from Quercus suber in Catalonia (NE Spain)
inferredcites →https://doi.org/10.1046/j.1469-8137.1998.00265.xopenalex-snapshot
Dark septate endophytes: a review of facultative biotrophic root‐colonizing fungi
inferredcites →https://doi.org/10.1046/j.1469-8137.2000.00605.xopenalex-snapshot
Piceirhiza bicolorata– the ectomycorrhizal expression of the Hymenoscyphus ericae aggregate?
inferredcites →https://doi.org/10.1080/00275514.1972.12019390openalex-snapshot
Phialocephala Humicola, A New Hyphomycete
inferredcites →https://doi.org/10.1080/00275514.1976.12019899openalex-snapshot
Illinois Fungi 6. Two New Species of Wood-Inhabiting Hyphomycetes from Freshwater
inferredcites →https://doi.org/10.1080/00275514.1985.12025185openalex-snapshot
New Species of Ectendomycorrhizal and Pseudomycorrhizal Fungi: Phialophora Finlandia, Chloridium paucisporum, And Phialocephala Fortinii
inferredcites →https://doi.org/10.1080/00275514.1995.12026505openalex-snapshot
Assessment of Phialophora species based on ribosomal DNA internal transcribed spacers and morphology
inferredcites →https://doi.org/10.1080/00275514.2000.12061194openalex-snapshot
Phialocephala victorinii sp. nov., endophyte of Cypripedium parviflorum
inferredcites →https://doi.org/10.1080/00275514.2001.12063182openalex-snapshot
Typing Cylindrocladium species by analysis of ribosomal DNA spacers polymorphism: Application to field isolates from the banana rhizosphere
inferredcites →https://doi.org/10.1080/00275514.2001.12063183openalex-snapshot
Molecular and morphological differentiation of Botryosphaeria dothidea (anamorph Fusicoccum aesculi ) from some other fungi with Fusicoccum anamorphs
inferredcites →https://doi.org/10.1080/00275514.2001.12063226openalex-snapshot
Phylogenetics of Helotiales and Rhytismatales Based on Partial Small Subunit Nuclear Ribosomal DNA Sequences
inferredcites →https://doi.org/10.1080/106351500750049752openalex-snapshot
Likelihood-Based Tests of Topologies in Phylogenetics
inferredcites →https://doi.org/10.1093/bioinformatics/13.3.235openalex-snapshot
Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
inferredcites →https://doi.org/10.1093/bioinformatics/14.9.817openalex-snapshot
MODELTEST: testing the model of DNA substitution.
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1111/j.1365-294x.1993.tb00005.xopenalex-snapshot
ITS primers with enhanced specificity for basidiomycetes ‐ application to the identification of mycorrhizae and rusts
inferredcites →https://doi.org/10.1111/j.1469-8137.1981.tb01729.xopenalex-snapshot
OBSERVATIONS ON THE MYCORRHIZAL STATUS OF SOME ALPINE PLANT COMMUNITIES
inferredcites →https://doi.org/10.1111/j.1469-8137.1996.tb01845.xopenalex-snapshot
The profusion of dark septate endophytic fungi in non‐ectomycorrhizal fine roots of forest trees and shrubs
inferredcites →https://doi.org/10.1128/mmbr.64.2.316-353.2000openalex-snapshot
Life History and Developmental Processes in the BasidiomyceteCoprinus cinereus
inferredcites →https://doi.org/10.1139/b00-068openalex-snapshot
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inferredcites →https://doi.org/10.1139/b00-137openalex-snapshot
A taxonomic re-evaluation of Phialocephala phycomyces
inferredcites →https://doi.org/10.1139/b61-094openalex-snapshot
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inferredcites →https://doi.org/10.1139/b63-086openalex-snapshot
THE LEPTOGRAPHIUM COMPLEX: TWO NEW SPECIES OF PHIALOCEPHALA
inferredcites →https://doi.org/10.1139/b64-121openalex-snapshot
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inferredcites →https://doi.org/10.1139/b66-050openalex-snapshot
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inferredcites →https://doi.org/10.1139/b87-336openalex-snapshot
New records and new taxa of fungi from the mycorrhizae of terrestrial orchids of Alberta
inferredcites →https://doi.org/10.1139/b89-161openalex-snapshot
Extraction of DNA from Basidiomycetes for ribosomal DNA hybridizations
inferredcites →https://doi.org/10.1139/b90-149openalex-snapshot
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inferredcites →https://doi.org/10.1139/b92-250openalex-snapshot
Characterization of sterile endophytic fungi from the mycorrhizae of subalpine plants
inferredcites →https://doi.org/10.1139/b93-199openalex-snapshot
Morphology and ecology of Phialocephala fortinii in roots of Rhododendron brachycarpum
inferredcites →https://doi.org/10.1139/b95-004openalex-snapshot
Two new species of Phialocephala occurring on Picea and Alnus
inferredcites →https://doi.org/10.1139/b96-085openalex-snapshot
Endophytic fungi in branches of Norway spruce with particular reference to Tryblidiopsis pinastri
inferredcites →https://doi.org/10.1139/b99-053openalex-snapshot
Wood-inhabiting microfungi isolated from Populus tremuloides from Alberta and northeastern British Columbia
inferredcites →https://doi.org/10.1139/w01-065openalex-snapshot
Characterization of the interaction between the dark septate fungus Phialocephala fortinii and Asparagus officinalis roots
inferredcites →https://doi.org/10.1139/x87-140openalex-snapshot
Mycorrhizal and pathological associations of dematiaceous fungi in roots of 7-month-old tree seedlings
inferredcites →https://doi.org/10.1139/x87-152openalex-snapshot
Ectomycorrhizal and ectendomycorrhizal associations of Phialophorafinlandia with Pinusresinosa, Picearubens, and Betulaalleghaniensis
inferredcites →https://doi.org/10.1139/x90-081openalex-snapshot
The mycorrhizal and nodulation status of container-grown trees and shrubs reared in commercial nurseries
inferredcites →https://doi.org/10.1146/annurev.es.22.110191.002521openalex-snapshot
Fungal Molecular Systematics
inferredcites →https://doi.org/10.1201/9780203909423-57openalex-snapshot
Fungal Root Endophytes
inferredcites →https://doi.org/10.1201/9781420011234openalex-snapshot
Correspondence Analysis in Practice
inferredcites →https://doi.org/10.2307/3760949openalex-snapshot
Assessment of Phialophora Species Based on Ribosomal DNA Internal Transcribed Spacers and Morphology
inferredcites →https://doi.org/10.2307/3761517openalex-snapshot
Phialocephala victorinii sp. nov., Endophyte of Cypripedium parviflorum
inferredcites →https://doi.org/10.2307/3761735openalex-snapshot
Typing Cylindrocladium Species by Analysis of Ribosomal DNA Spacers Polymorphism: Application to Field Isolates from the Banana Rhizosphere
inferredcites →https://doi.org/10.2307/3761736openalex-snapshot
Molecular and Morphological Differentiation of Botryosphaeria dothidea (Anamorph Fusicoccum aesculi) from Some Other Fungi with Fusicoccum Anamorphs
inferredcites →https://doi.org/10.3929/ethz-a-001828154openalex-snapshot
Vorkommen und Charakterisierung von dunklen, septierten Hyphomyceten (DSH) in Gehölzwurzeln
inferredcites →https://doi.org/10.5962/p.416990openalex-snapshot
New or interesting microfungi XIV. Dematiaceous hyphomycetes from Mt Kenya

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Advancements in fungal and fungi-like diversity with a new species and updated records
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Molecular Diversity and Ecological Roles of Mycorrhiza-Associated Sterile Fungal Endophytes in Mediterranean Ecosystems
inferred← citeshttps://doi.org/10.1007/3-540-33526-9_7openalex-snapshot
Biodiversity of Fungal Root-Endophyte Communities and Populations, in Particular of the Dark Septate Endophyte Phialocephala fortinii s. l.
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Fungal Endophytes in Plant Roots: Taxonomy, Colonization Patterns, and Functions
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Structure of Diversity in Dark Septate Endophytes: From Species to Genes
inferred← citeshttps://doi.org/10.1007/s00572-009-0239-0openalex-snapshot
The ectomycorrhizal morphotype Pinirhiza sclerotia is formed by Acephala macrosclerotiorum sp. nov., a close relative of Phialocephala fortinii
inferred← citeshttps://doi.org/10.1007/s00572-017-0760-5openalex-snapshot
Effect of soil moisture on root-associated fungal communities of Erica dominans in Drakensberg mountains in South Africa
inferred← citeshttps://doi.org/10.1007/s10267-012-0189-9openalex-snapshot
Bristle-like fungal colonizers on the stone walls of the Kitora and Takamatsuzuka Tumuli are identified as Kendrickiella phycomyces
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Molecular characterization and endophytic nature of the root-associated fungus Meliniomyces variabilis (LtVB3)
inferred← citeshttps://doi.org/10.1007/s10886-007-9412-0openalex-snapshot
Effect of a Rugulosin-producing Endophyte in Picea glauca on Choristoneura fumiferana
inferred← citeshttps://doi.org/10.1007/s11557-025-02060-9openalex-snapshot
Peltigeromyces mollisioides sp. nov. (Peltigeromycetaceae fam. nov., Helotiales), the correct name for Parthenope pilatii s. auct., with a revision of the type species P. microsporus and P. goossensiae
inferred← citeshttps://doi.org/10.1007/s13225-022-00509-wopenalex-snapshot
Anamorphic chaetosphaeriaceous fungi from China
inferred← citeshttps://doi.org/10.1016/b978-0-12-415955-6.00011-6openalex-snapshot
Plant-Soil Biota Interactions
inferred← citeshttps://doi.org/10.1016/b978-0-12-822542-4.00013-9openalex-snapshot
Dark septate endophytes of forest trees
inferred← citeshttps://doi.org/10.1016/j.fgb.2004.03.004openalex-snapshot
Evidence for subdivision of the root-endophyte Phialocephala fortinii into cryptic species and recombination within species
inferred← citeshttps://doi.org/10.1016/j.fgb.2006.12.008openalex-snapshot
Suitability of methods for species recognition in the Phialocephala fortinii–Acephala applanata species complex using DNA analysis
inferred← citeshttps://doi.org/10.1016/j.funbio.2016.11.007openalex-snapshot
The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. – Acephala appalanata species complex
inferred← citeshttps://doi.org/10.1016/j.funbio.2018.02.005openalex-snapshot
Competitiveness of endophytic Phialocephala fortinii s.l. – Acephala applanata strains in Norway spruce roots
inferred← citeshttps://doi.org/10.1016/j.funeco.2009.02.004openalex-snapshot
Taxonomic affinities of dark septate root endophytes of Colobanthus quitensis and Deschampsia antarctica, the two native Antarctic vascular plant species
inferred← citeshttps://doi.org/10.1016/j.funeco.2019.100904openalex-snapshot
Does water availability influence the abundance of species of the Phialocephala fortinii s.l. – Acephala applanata complex (PAC) in roots of pubescent oak (Quercus pubescens) and Scots pine (Pinus sylvestris)?
inferred← citeshttps://doi.org/10.1016/j.funeco.2024.101351openalex-snapshot
Root contact dominates vegetative transmission of the Phialocephala fortinii s.l. – Acephala applanata species complex (PAC)
inferred← citeshttps://doi.org/10.1016/j.mycres.2008.01.007openalex-snapshot
Spread and persistence of a rugulosin-producing endophyte in Picea glauca seedlings
inferred← citeshttps://doi.org/10.1016/j.mycres.2008.10.005openalex-snapshot
Phylogeny of Phaeomollisia piceae gen. sp. nov.: a dark, septate, conifer-needle endophyte and its relationships to Phialocephala and Acephala
inferred← citeshttps://doi.org/10.1016/j.mycres.2009.04.008openalex-snapshot
Cryptic speciation and community structure of Herpotrichia juniperi, the causal agent of brown felt blight of conifers
inferred← citeshttps://doi.org/10.1016/j.simyco.2018.10.004openalex-snapshot
The root-symbiotic Rhizoscyphus ericae aggregate and Hyaloscypha ( Leotiomycetes ) are congeneric: Phylogenetic and experimental evidence
inferred← citeshttps://doi.org/10.1016/j.simyco.2020.02.005openalex-snapshot
Mollisiaceae: An overlooked lineage of diverse endophytes
inferred← citeshttps://doi.org/10.1016/j.soilbio.2015.01.019openalex-snapshot
Fine root decomposition, nutrient mobilization and fungal communities in a pine forest ecosystem
inferred← citeshttps://doi.org/10.1016/j.soilbio.2018.04.016openalex-snapshot
Microarthropods influence the composition of rhizospheric fungal communities by stimulating specific taxa
inferred← citeshttps://doi.org/10.1016/j.ympev.2006.05.031openalex-snapshot
Evolution of helotialean fungi (Leotiomycetes, Pezizomycotina): A nuclear rDNA phylogeny
inferred← citeshttps://doi.org/10.1017/s0953756203008669openalex-snapshot
Development of single-copy RFLP markers for population genetic studies of Phialocephala fortinii and closely related taxa
inferred← citeshttps://doi.org/10.1017/s0953756204000528openalex-snapshot
Patterns of genetic variation in Phialocephala fortinii across a broad latitudinal transect in Canada
inferred← citeshttps://doi.org/10.1017/s0953756204000668openalex-snapshot
Ecology and molecular characterization of dark septate fungi from roots, living stems, coarse and fine woody debris
inferred← citeshttps://doi.org/10.1080/15572536.2006.11832794openalex-snapshot
Molecular and phenotypic description of the widespread root symbiont Acephala applanata gen. et sp. nov., formerly known as dark-septate endophyte Type 1
inferred← citeshttps://doi.org/10.1080/15572536.2008.11832498openalex-snapshot
Assignment of species rank to six reproductively isolated cryptic species of the Phialocephala fortinii s.l.- Acephala applanata species complex
inferred← citeshttps://doi.org/10.1094/pdis-12-16-1761-reopenalex-snapshot
Characterization of Fungi Associated With Wood Decay of Tree Species and Grapevine in Greece
inferred← citeshttps://doi.org/10.1111/efp.12076openalex-snapshot
Sporendocladia bactrospora associated with wounds on native broadleaved trees in N orway and S weden
inferred← citeshttps://doi.org/10.1111/j.1439-0329.2008.00589.xopenalex-snapshot
The teleomorph of Chalara fraxinea, the causal agent of ash dieback
inferred← citeshttps://doi.org/10.1139/b04-030openalex-snapshot
Phialocephala sphaeroides sp. nov., a new species among the dark septate endophytes from a boreal wetland in Canada
inferred← citeshttps://doi.org/10.1139/b04-056openalex-snapshot
The evolutionary implications of exploitation in mycorrhizas
inferred← citeshttps://doi.org/10.1139/b08-016openalex-snapshot
Associations between microfungal endophytes and roots: do structural features indicate function?
inferred← citeshttps://doi.org/10.1139/b08-108openalex-snapshot
Dark septate endophytes (DSE) of the Phialocephala fortinii s.l. – Acephala applanata species complex in tree roots: classification, population biology, and ecology
inferred← citeshttps://doi.org/10.1139/w06-018openalex-snapshot
Vacuolar localization of phosphorus in hyphae of Phialocephala fortinii , a dark septate fungal root endophyte
inferred← citeshttps://doi.org/10.1186/1471-2164-13-166openalex-snapshot
Mitochondrial genome evolution in species belonging to the Phialocephala fortinii s.l. - Acephala applanata species complex
inferred← citeshttps://doi.org/10.1371/journal.pone.0004269openalex-snapshot
Accurate Inference of Subtle Population Structure (and Other Genetic Discontinuities) Using Principal Coordinates
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Mycorrhizal and Dark-Septate Fungi in Plant Roots Above 4270 Meters Elevation in the Andes and Rocky Mountains
inferred← citeshttps://doi.org/10.1657/1523-0430(2005)037[0177:domtaa]2.0.co;2openalex-snapshot
Distribution of Mycorrhizal Types among Alpine Vascular Plant Families on the Beartooth Plateau, Rocky Mountains, U.S.A., in Reference to Large-Scale Patterns in Arctic–Alpine Habitats
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Diversidad, ecología e importancia potencial de los hongos endófitos septados obscuros en México
inferred← citeshttps://doi.org/10.17221/45/2008-ppsopenalex-snapshot
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inferred← citeshttps://doi.org/10.18174/22893openalex-snapshot
Organic nitrogen uptake and endophytic, mutualistic fungi in Dutch heathland ecosystems
inferred← citeshttps://doi.org/10.22215/etd/2017-12013openalex-snapshot
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inferred← citeshttps://doi.org/10.3114/sim.2022.103.04openalex-snapshot
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inferred← citeshttps://doi.org/10.3114/sim.53.1.1openalex-snapshot
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Root endophyte and mycorrhizosphere fungi of black spruce, Picea mariana, in a boreal forest habitat: influence of site factors on fungal distributions
inferred← citeshttps://doi.org/10.3114/sim.53.1.147openalex-snapshot
Diversity of symbiotic root endophytes of the Helotiales in ericaceous plants and the grass, Deschampsia flexuosa
inferred← citeshttps://doi.org/10.3114/sim.53.1.191openalex-snapshot
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inferred← citeshttps://doi.org/10.3389/fmicb.2020.00906openalex-snapshot
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inferred← citeshttps://doi.org/10.3852/08-066openalex-snapshot
Phialocephala urceolata, sp. nov., from a commercial, water-soluble heparin solution
inferred← citeshttps://doi.org/10.3852/10-329openalex-snapshot
Colonization of roots of cultivated Solanum lycopersicum by dark septate and other ascomycetous endophytes
inferred← citeshttps://doi.org/10.3852/11-059openalex-snapshot
Phialide arrangement and character evolution in the helotialean anamorph genera Cadophora and Phialocephala
inferred← citeshttps://doi.org/10.3852/15-136openalex-snapshot
Sexual and asexual states of some endophytic Phialocephala species of Picea
inferred← citeshttps://doi.org/10.3852/mycologia.100.1.47openalex-snapshot
Assignment of species rank to six reproductively isolated cryptic species of the Phialocephala fortinii s.l.-Acephala applanata species complex
inferred← citeshttps://doi.org/10.53846/goediss-3875openalex-snapshot
Fungal diversity in a transgenic poplar plantation and the role of ectomycorrhizal fungi for tree performance under field and controlled drought stress conditions
inferred← citeshttps://doi.org/10.5897/ajmr10.389openalex-snapshot
The colonization of plants by dark septate endophytes (DSE) in the valley-type savanna of Yunnan, southwest China
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Isolation, identification and bioactivity of fungal endophytes from selected Kenyan medicinal plants
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