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Polyploid formation in cotton is not accompanied by rapid genomic changes

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1521-1878(199909)21:9<761::aid-bies7>3.0.co;2-copenalex-snapshot

Rapid structural and epigenetic changes in polyploid and aneuploid genomes

inferredcites →https://doi.org/10.1002/9780470515501.ch10openalex-snapshot

Gene Silencing in Plants: Relevance for Genome Evolution and the Acquisition of Genomica Methylation Patterns

inferredcites →https://doi.org/10.1002/dvg.1020080513openalex-snapshot

DNA methylation in plants

inferredcites →https://doi.org/10.1007/bf02338802openalex-snapshot

Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons

inferredcites →https://doi.org/10.1007/bf02406720openalex-snapshot

Copia-like retrotransposable element evolution in diploid and polyploid cotton (Gossypium L.)

inferredcites →https://doi.org/10.1007/s001220050071openalex-snapshot

Application of fluorescence-based semi-automated AFLP analysis in barley and wheat

inferredcites →https://doi.org/10.1007/s001220051297openalex-snapshot

DNA methylation and AFLP marker distribution in the soybean genome

inferredcites →https://doi.org/10.1007/s001220051399openalex-snapshot

Two high-density AFLP® linkage maps of Zea mays L.: analysis of distribution of AFLP markers

inferredcites →https://doi.org/10.1007/s004380050374openalex-snapshot

Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphisms

inferredcites →https://doi.org/10.1007/s004380050986openalex-snapshot

Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique

inferredcites →https://doi.org/10.1016/0169-5347(94)90166-xopenalex-snapshot

Biological relationships between africa and South America

inferredcites →https://doi.org/10.1016/s0065-2660(08)60515-5openalex-snapshot

Genetics, Cytology, and Evolution of Gossypium

inferredcites →https://doi.org/10.1016/s0168-9525(97)01181-5openalex-snapshot

Cytosine methylation and the ecology of intragenomic parasites

inferredcites →https://doi.org/10.1016/s0169-5347(99)01638-9openalex-snapshot

Polyploidy: recurrent formation and genome evolution

inferredcites →https://doi.org/10.1016/s0959-437x(97)80150-5openalex-snapshot

DNA mismatch repair in mammals: role in disease and meiosis

inferredcites →https://doi.org/10.1016/s0960-9822(01)00556-5openalex-snapshot

Polyploid evolution: Keeping the peace at genomic reunions

inferredcites →https://doi.org/10.1016/s1360-1385(97)01154-0openalex-snapshot

Polyploidy in angiosperms

inferredcites →https://doi.org/10.1023/a:1003641217653openalex-snapshot

Production of fertile hybrid germplasm with diploid Australian Gossypium species for cotton improvement

inferredcites →https://doi.org/10.1023/a:1006392424384openalex-snapshot

Genome evolution in polyploids

inferredcites →https://doi.org/10.1023/a:1006480722854openalex-snapshot

Genetic and epigenetic interactions in allopolyploid plants

inferredcites →https://doi.org/10.1023/a:1009239522541openalex-snapshot

Ty1-copia-retrotransposon Behavior in a Polyploid Cotton

inferredcites →https://doi.org/10.1038/29985openalex-snapshot

Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid

inferredcites →https://doi.org/10.1038/35049533openalex-snapshot

DNA methylation in health and disease

inferredcites →https://doi.org/10.1038/43607openalex-snapshot

Global methylation in eutherian hybrids

inferredcites →https://doi.org/10.1038/43611openalex-snapshot

reply: Global methylation in eutherian hybrids

inferredcites →https://doi.org/10.1046/j.1525-142x.2001.00079.xopenalex-snapshot

Comparative development of fiber in wild and cultivated cotton

inferredcites →https://doi.org/10.1046/j.1525-142x.2001.00082.xopenalex-snapshot

Evolution and development at the National Science Foundation

inferredcites →https://doi.org/10.1073/pnas.86.11.4132openalex-snapshot

New World tetraploid cottons contain Old World cytoplasm

inferredcites →https://doi.org/10.1073/pnas.92.1.280openalex-snapshot

Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium).

inferredcites →https://doi.org/10.1073/pnas.92.17.7719openalex-snapshot

Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution.

inferredcites →https://doi.org/10.1073/pnas.92.18.8089openalex-snapshot

The dynamic nature of polyploid genomes.

inferredcites →https://doi.org/10.1073/pnas.95.8.4419openalex-snapshot

Polyploid formation created unique avenues for response to selection in Gossypium (cotton)

inferredcites →https://doi.org/10.1073/pnas.96.25.14406openalex-snapshot

Duplicated genes evolve independently after polyploid formation in cotton

inferredcites →https://doi.org/10.1093/genetics/147.3.1381openalex-snapshot

Rapid Elimination of Low-Copy DNA Sequences in Polyploid Wheat: A Possible Mechanism for Differentiation of Homoeologous Chromosomes

inferredcites →https://doi.org/10.1093/genetics/155.4.1913openalex-snapshot

Copy Number Lability and Evolutionary Dynamics of the Adh Gene Family in Diploid and Tetraploid Cotton (Gossypium)

inferredcites →https://doi.org/10.1093/jhered/90.1.251openalex-snapshot

Brief communication. The mitochondrial genome of allotetraploid cotton (Gossypium L.)

inferredcites →https://doi.org/10.1093/jhered/91.3.242openalex-snapshot

Novel flowering time variation in the resynthesized polyploid Brassica napus

inferredcites →https://doi.org/10.1093/nar/23.21.4407openalex-snapshot

AFLP: a new technique for DNA fingerprinting

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004119openalex-snapshot

Differential Evolutionary Dynamics of Duplicated Paralogous Adh Loci in Allotetraploid Cotton (Gossypium)

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004182openalex-snapshot

Retrotransposons and Genomic Stability in Populations of the Young Allopolyploid Species Spartina anglica C.E. Hubbard (Poaceae)

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026112openalex-snapshot

Elimination and rearrangement of parental rDNA in the allotetraploid Nicotiana tabacum

inferredcites →https://doi.org/10.1097/00001622-200207000-00007openalex-snapshot

cDNA microarray analysis of global gene expression in sarcomas

inferredcites →https://doi.org/10.1101/gr.8.5.479openalex-snapshot

Dispersed Repetitive DNA Has Spread to New Genomes Since Polyploid Formation in Cotton

inferredcites →https://doi.org/10.1105/tpc.12.9.1551openalex-snapshot

Phenotypic Instability and Rapid Gene Silencing in Newly Formed Arabidopsis Allotetraploids

inferredcites →https://doi.org/10.1126/science.264.5157.421openalex-snapshot

Stomatal Size in Fossil Plants: Evidence for Polyploidy in Majority of Angiosperms

inferredcites →https://doi.org/10.1139/g00-026openalex-snapshot

AmphidiploidBrassica junceacontains conserved progenitor genomes

inferredcites →https://doi.org/10.1139/g00-058openalex-snapshot

Retrotransposon activation followed by rapid repression in introgressed rice plants

inferredcites →https://doi.org/10.1139/g98-011openalex-snapshot

Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. I. Changes in low-copy noncoding DNA sequences

inferredcites →https://doi.org/10.1139/g98-052openalex-snapshot

Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops . II. Changes in low-copy coding DNA sequences

inferredcites →https://doi.org/10.1139/g98-118openalex-snapshot

Comparative genetic mapping of allotetraploid cotton and its diploid progenitors

inferredcites →https://doi.org/10.1146/annurev.arplant.49.1.223openalex-snapshot

DNA METHYLATION IN PLANTS

inferredcites →https://doi.org/10.2134/agronmonogr24.c2openalex-snapshot

Taxonomy and Germplasm Resources

inferredcites →https://doi.org/10.22244/rheedea.1992.02.02.04openalex-snapshot

A revised taxonomic interpretation of Gossypium L. (Malvaceae)

inferredcites →https://doi.org/10.2307/2419069openalex-snapshot

Phylogenetics of the Cotton Genus (Gossypium): Character-State Weighted Parsimony Analysis of Chloroplast-DNA Restriction Site Data and Its Systematic and Biogeographic Implications

inferredcites →https://doi.org/10.2307/2419457openalex-snapshot

Congruence and Consensus in the Cotton Tribe (Malvaceae)

inferredcites →https://doi.org/10.2307/2446394openalex-snapshot

Evolution of interspersed repetitive elements in Gossypium (Malvaceae)

inferredcites →https://doi.org/10.2307/2806731openalex-snapshot

The Natural History of the Cotton Tribe.

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/phytotaxa.392.3.1zenodo-depositor-declared

Parental origin and genome evolution of several Eurasian hexaploid species of Chenopodium (Chenopodiaceae)

inferred← citeshttps://doi.org/10.1002/9781118552872.ch21openalex-snapshot

Genetic and Epigenetic Mechanisms for Polyploidy and Hybridity

inferred← citeshttps://doi.org/10.1002/9781119312994.apr0383openalex-snapshot

Perspectives on Ecological and Evolutionary Systems Biology

inferred← citeshttps://doi.org/10.1002/9781119821946.ch13openalex-snapshot

Epigenetics in Hybridization and Polyploidization of Aquatic Animals

inferred← citeshttps://doi.org/10.1002/9781444312249.ch12openalex-snapshot

Perspectives on Ecological and Evolutionary Systems Biology

inferred← citeshttps://doi.org/10.1002/advs.202004222openalex-snapshot

Whole‐Genome Sequence of Synthesized Allopolyploids in Cucumis Reveals Insights into the Genome Evolution of Allopolyploidization

inferred← citeshttps://doi.org/10.1002/ajb2.1239openalex-snapshot

Divergent gene expression levels between diploid and autotetraploid Tolmiea relative to the total transcriptome, the cell, and biomass

inferred← citeshttps://doi.org/10.1002/bies.20374openalex-snapshot

Mechanisms of genomic rearrangements and gene expression changes in plant polyploids

inferred← citeshttps://doi.org/10.1002/ece3.7095openalex-snapshot

Retrotransposon‐based genetic diversity of Deschampsia antarctica Desv. from King George Island (Maritime Antarctic)

inferred← citeshttps://doi.org/10.1002/jsfa.7120openalex-snapshot

Comparative analysis of resistance gene analogues encoding NBS‐LRR domains in cotton

inferred← citeshttps://doi.org/10.1002/pmic.200401092openalex-snapshot

Autopolyploidy in cabbage (Brassica oleracea L.) does not alter significantly the proteomes of green tissues

inferred← citeshttps://doi.org/10.1002/pmic.200600010openalex-snapshot

Survey of microarray technologies suitable to elucidate transcriptional networks as exemplified by studying KRAB zinc finger gene families

inferred← citeshttps://doi.org/10.1002/tax.584013openalex-snapshot

Phylogenetic relationships of diploid and polyploid species in Ludwigia sect. Isnardia (Onagraceae) based on chloroplast and nuclear DNAs

inferred← citeshttps://doi.org/10.1007/1-4020-4956-0_32openalex-snapshot

NUCLEAR CYTOPLASMIC INTERACTION HYPOTHESIS AND THE ROLE OF TRANSLOCATIONS IN NICOTIANA ALLOPOLYPLOIDS

inferred← citeshttps://doi.org/10.1007/978-0-387-70810-2_1openalex-snapshot

Evolution and Natural History of the Cotton Genus

inferred← citeshttps://doi.org/10.1007/978-0-387-70810-2_17openalex-snapshot

Responses of the Cotton Genome to Polyploidy

inferred← citeshttps://doi.org/10.1007/978-0-387-77863-1_11openalex-snapshot

The Polyploid Origin of Maize

inferred← citeshttps://doi.org/10.1007/978-1-4020-5380-1_9openalex-snapshot

Substrate Supply for Cellulose Synthesis and its Stress Sensitivity in the Cotton Fiber

inferred← citeshttps://doi.org/10.1007/978-1-4419-7118-0_7openalex-snapshot

Structural and Functional Evolution of Resynthesized Polyploids

inferred← citeshttps://doi.org/10.1007/978-1-62703-773-0_10openalex-snapshot

Methylation-Sensitive Amplified Polymorphism (MSAP) Marker to Investigate Drought-Stress Response in Montepulciano and Sangiovese Grape Cultivars

inferred← citeshttps://doi.org/10.1007/978-3-030-64504-5_2openalex-snapshot

Evolution and Diversity of the Cotton Genome

inferred← citeshttps://doi.org/10.1007/978-3-319-07623-2_5openalex-snapshot

Polyploid Speciation and Genome Evolution: Lessons from Recent Allopolyploids

inferred← citeshttps://doi.org/10.1007/978-3-319-43694-4_7openalex-snapshot

Homoeologous Exchanges and Gene Losses Generate Diversity and Differentiate the B. napus Genome from that of Its Ancestors

inferred← citeshttps://doi.org/10.1007/978-3-540-34538-1_1openalex-snapshot

Cotton

inferred← citeshttps://doi.org/10.1007/978-3-642-04796-1_3openalex-snapshot

Cotton Genomics

inferred← citeshttps://doi.org/10.1007/978-3-642-21102-7_6openalex-snapshot

Gossypium

inferred← citeshttps://doi.org/10.1007/978-3-642-31442-1_10openalex-snapshot

Jeans, Genes, and Genomes: Cotton as a Model for Studying Polyploidy

inferred← citeshttps://doi.org/10.1007/978-3-642-31442-1_11openalex-snapshot

Evolutionary Implications of Genome and Karyotype Restructuring in Nicotiana tabacum L

inferred← citeshttps://doi.org/10.1007/978-3-642-31442-1_13openalex-snapshot

Allopolyploid Speciation in Action: The Origins and Evolution of Senecio cambrensis

inferred← citeshttps://doi.org/10.1007/978-3-662-45657-6_63openalex-snapshot

Extent and Pattern of DNA Cytosine Methylation Changes Between Non-pollinated and Pollinated Ovaries from Cymbidium hybridium

inferred← citeshttps://doi.org/10.1007/978-3-7091-1130-7_11openalex-snapshot

Duplications and Turnover in Plant Genomes

inferred← citeshttps://doi.org/10.1007/978-3-7091-1130-7_12openalex-snapshot

Concerted Evolution of Multigene Families and Homoeologous Recombination

inferred← citeshttps://doi.org/10.1007/978-3-7091-1160-4_17openalex-snapshot

Significance and Biological Consequences of Polyploidization in Land Plant Evolution

inferred← citeshttps://doi.org/10.1007/978-3-7091-1160-4_2openalex-snapshot

The Plant Nucleus at War and Peace: Genome Organization in the Interphase Nucleus

inferred← citeshttps://doi.org/10.1007/978-81-322-2286-6_24openalex-snapshot

Polyploidy in Crop Improvement and Evolution

inferred← citeshttps://doi.org/10.1007/978-81-322-3772-3_6openalex-snapshot

Polyploidy and Genomic Changes

inferred← citeshttps://doi.org/10.1007/978-81-322-3772-3_8openalex-snapshot

Future Prospects in Polyploidy Research

inferred← citeshttps://doi.org/10.1007/s00122-002-1092-0openalex-snapshot

Multiple origins of allopolyploid Aegilops triuncialis

inferred← citeshttps://doi.org/10.1007/s00122-003-1433-7openalex-snapshot

Genetic mapping and QTL analysis of fiber-related traits in cotton (Gossypium)

inferred← citeshttps://doi.org/10.1007/s00122-004-1850-2openalex-snapshot

Genetic diversity and geographic pattern in early South American cotton domestication

inferred← citeshttps://doi.org/10.1007/s00122-005-0070-8openalex-snapshot

Cleaved AFLP (cAFLP), a modified amplified fragment length polymorphism analysis for cotton

inferred← citeshttps://doi.org/10.1007/s00122-008-0861-9openalex-snapshot

Alterations in cytosine methylation and species-specific transcription induced by interspecific hybridization between Oryza sativa and O. officinalis

inferred← citeshttps://doi.org/10.1007/s00122-009-0966-9openalex-snapshot

A large number of tetraploid Arabidopsis thaliana lines, generated by a rapid strategy, reveal high stability of neo-tetraploids during consecutive generations

inferred← citeshttps://doi.org/10.1007/s00122-009-1127-xopenalex-snapshot

Intraspecific hybrids of Arabidopsis thaliana revealed no gross alterations in endopolyploidy, DNA methylation, histone modifications and transcript levels

inferred← citeshttps://doi.org/10.1007/s00122-010-1399-1openalex-snapshot

Synthesis of a Brassica trigenomic allohexaploid (B. carinata × B. rapa) de novo and its stability in subsequent generations

inferred← citeshttps://doi.org/10.1007/s00122-011-1782-6openalex-snapshot

A microsatellite linkage map for the cultivated strawberry (Fragaria × ananassa) suggests extensive regions of homozygosity in the genome that may have resulted from breeding and selection

inferred← citeshttps://doi.org/10.1007/s00299-008-0568-zopenalex-snapshot

ATG-anchored AFLP (ATG-AFLP) analysis in cotton

inferred← citeshttps://doi.org/10.1007/s00299-013-1475-5openalex-snapshot

Nucleolar dominance and different genome behaviors in hybrids and allopolyploids

inferred← citeshttps://doi.org/10.1007/s00412-009-0254-0openalex-snapshot

Structure and size variations between 12A and 12D homoeologous chromosomes based on high-resolution cytogenetic map in allotetraploid cotton

inferred← citeshttps://doi.org/10.1007/s00425-006-0381-2openalex-snapshot

Cytological diploidization and rapid genome changes of the newly synthesized allotetraploids Cucumis × hytivus

inferred← citeshttps://doi.org/10.1007/s00425-008-0844-8openalex-snapshot

Rapid alterations of gene expression and cytosine methylation in newly synthesized Brassica napus allopolyploids

inferred← citeshttps://doi.org/10.1007/s00425-017-2772-yopenalex-snapshot

Maternal doubled haploid production in interploidy hybridization between Brassica napus and Brassica allooctaploids

inferred← citeshttps://doi.org/10.1007/s00425-017-2827-0openalex-snapshot

Reorganization of wheat and rye genomes in octoploid triticale (× Triticosecale)

inferred← citeshttps://doi.org/10.1007/s00438-005-1148-3openalex-snapshot

Analysis of DNA methylation related to rice adult plant resistance to bacterial blight based on methylation-sensitive AFLP (MSAP) analysis

inferred← citeshttps://doi.org/10.1007/s00438-008-0421-7openalex-snapshot

The allotetraploid Arabidopsis thaliana–Arabidopsis lyrata subsp. petraea as an alternative model system for the study of polyploidy in plants

inferred← citeshttps://doi.org/10.1007/s00606-006-0506-xopenalex-snapshot

Nuclear DNA content in allopolyploid species and synthetic hybrids in the grass genus Paspalum

inferred← citeshttps://doi.org/10.1007/s00606-012-0632-6openalex-snapshot

Genome synteny and evolution of AABB allotetraploids in Hibiscus section Furcaria revealed by interspecific hybridization, ISSR and SSR markers

inferred← citeshttps://doi.org/10.1007/s00606-012-0653-1openalex-snapshot

Molecular cytogenetic studies of the “Xanthocephalum group” (Asteraceae)

inferred← citeshttps://doi.org/10.1007/s10530-008-9383-2openalex-snapshot

Hybridization, polyploidy and invasion: lessons from Spartina (Poaceae)

inferred← citeshttps://doi.org/10.1007/s10535-015-0553-7openalex-snapshot

Application of ISSR-PCR, IRAP-PCR, REMAP-PCR, and ITAP-PCR in the assessment of genomic changes in the early generation of triticale

inferred← citeshttps://doi.org/10.1007/s10577-014-9416-xopenalex-snapshot

Polyploidy in the Arabidopsis genus

inferred← citeshttps://doi.org/10.1007/s10681-008-9790-6openalex-snapshot

Fine mapping of open-bud duplicate genes in homoelogous chromosomes of tetraploid cotton

inferred← citeshttps://doi.org/10.1007/s10681-010-0259-zopenalex-snapshot

Effect of DNA methylation on molecular diversity of watermelon heirlooms and stability of methylation specific polymorphisms across the genealogies

inferred← citeshttps://doi.org/10.1007/s10681-010-0310-0openalex-snapshot

Characterization of resistance gene analogs from Gossypium arboreum and their evolutionary relationships with homologs from tetraploid cottons

inferred← citeshttps://doi.org/10.1007/s10681-011-0571-2openalex-snapshot

Variation of DNA methylation and phenotypic traits following unilateral sexual polyploidization in Medicago

inferred← citeshttps://doi.org/10.1007/s10709-014-9769-2openalex-snapshot

Genetic response of Paspalum plicatulum to genome duplication

inferred← citeshttps://doi.org/10.1007/s10709-020-00094-3openalex-snapshot

Screening diversity and distribution of Copia retrotransposons reveals a specific amplification of BARE1 elements in genomes of the polyploid Hordeum murinum complex

inferred← citeshttps://doi.org/10.1007/s10722-018-0637-2openalex-snapshot

The occurrence of wild cotton Gossypium mustelinum Miers ex Watt populations in the coast of Pernambuco, Northeastern Brazil

inferred← citeshttps://doi.org/10.1007/s11032-011-9682-7openalex-snapshot

Identification of genes that were differentially expressed and associated with fiber yield and quality using cDNA-AFLP and a backcross inbred line population

inferred← citeshttps://doi.org/10.1007/s11103-008-9305-9openalex-snapshot

Gene expression in diplosporous and sexual Eragrostis curvula genotypes with differing ploidy levels

inferred← citeshttps://doi.org/10.1007/s11105-010-0280-3openalex-snapshot

DNA Methylation in Genomes of Several Annual Herbaceous and Woody Perennial Plants of Varying Ploidy as Detected by MSAP

inferred← citeshttps://doi.org/10.1007/s11105-011-0301-xopenalex-snapshot

Proteomic Changes in Newly Synthesized Brassica napus Allotetraploids and Their Early Generations

inferred← citeshttps://doi.org/10.1007/s11177-005-0177-7openalex-snapshot

Allopolyploidy in Wheat Induces Rapid and Heritable Alterations in DNA Methylation Patterns of Cellular Genes and Mobile Elements

inferred← citeshttps://doi.org/10.1007/s11240-009-9539-5openalex-snapshot

Analysis of DNA methylation patterns of PLBs derived from Cymbidium hybridium based on MSAP

inferred← citeshttps://doi.org/10.1007/s11240-009-9656-1openalex-snapshot

DNA-methylation changes in grapevine somaclones following in vitro culture and thermotherapy

inferred← citeshttps://doi.org/10.1007/s11240-013-0292-4openalex-snapshot

Doubled haploids of novel trigenomic Brassica derived from various interspecific crosses

inferred← citeshttps://doi.org/10.1007/s11284-007-0459-8openalex-snapshot

Utility of the methylation‐sensitive amplified polymorphism (MSAP) marker for detection of DNA methylation polymorphism and epigenetic population structure in a wild barley species ( Hordeum brevisubulatum )

inferred← citeshttps://doi.org/10.1007/s12298-017-0445-8openalex-snapshot

Cytogenetic and molecular evidences revealing genomic changes after autopolyploidization: a case study of synthetic autotetraploid Phlox drummondii Hook

inferred← citeshttps://doi.org/10.1007/s13237-010-0002-0openalex-snapshot

Cytomixis-like chromosomes/chromatin elimination from pollen mother cells (PMCs) in wheat-rye allopolyploids

inferred← citeshttps://doi.org/10.1007/s13258-015-0279-0openalex-snapshot

Extensive reprogramming of cytosine methylation in Oryza allotetraploids

inferred← citeshttps://doi.org/10.1007/s44372-024-00012-3openalex-snapshot

The contributions of cytogenetics, genetics, and epigenetics to the stability of plants polyploidy

inferred← citeshttps://doi.org/10.1016/b978-0-12-800255-1.00004-1openalex-snapshot

Genetic Mechanisms of Allopolyploid Speciation Through Hybrid Genome Doubling

inferred← citeshttps://doi.org/10.1016/b978-012301463-4/50009-7openalex-snapshot

Polyploidy in Plants

inferred← citeshttps://doi.org/10.1016/j.cj.2014.06.009openalex-snapshot

Morphological, cytological and molecular analyses of a synthetic hexaploid derived from an interspecific hybrid between Gossypium hirsutum and Gossypium anomalum

inferred← citeshttps://doi.org/10.1016/j.cj.2022.03.002openalex-snapshot

Comparative genomic analyses reveal cis-regulatory divergence after polyploidization in cotton

inferred← citeshttps://doi.org/10.1016/j.cub.2007.08.060openalex-snapshot

Polyploidy: Doubling up for Evolutionary Success

inferred← citeshttps://doi.org/10.1016/j.cub.2008.03.043openalex-snapshot

Genomic Clues to the Evolutionary Success of Polyploid Plants

inferred← citeshttps://doi.org/10.1016/j.gde.2009.10.005openalex-snapshot

Polyploidy and genome restructuring: a variety of outcomes

inferred← citeshttps://doi.org/10.1016/j.indcrop.2023.116471openalex-snapshot

Comparative analysis of genome sequences of the two cultivated tetraploid cottons, Gossypium hirsutum (L.) and G. barbadense (L.)

inferred← citeshttps://doi.org/10.1016/j.jplph.2006.07.002openalex-snapshot

Genome polymorphisms and gene differential expression in a ‘back-and-forth’ ploidy-altered series of weeping lovegrass (Eragrostis curvula)

inferred← citeshttps://doi.org/10.1016/j.pbi.2007.04.012openalex-snapshot

The plant genome's methylation status and response to stress: implications for plant improvement

inferred← citeshttps://doi.org/10.1016/j.pbi.2009.11.004openalex-snapshot

Genomic and expression plasticity of polyploidy

inferred← citeshttps://doi.org/10.1016/j.pbi.2015.02.007openalex-snapshot

Epigenetic and developmental regulation in plant polyploids

inferred← citeshttps://doi.org/10.1016/j.plantsci.2003.09.004openalex-snapshot

Analysis of DNA methylation during germination of pepper (Capsicum annuum L.) seeds using methylation-sensitive amplification polymorphism (MSAP)

inferred← citeshttps://doi.org/10.1016/j.plantsci.2005.03.015openalex-snapshot

A comprehensive analysis of gene expression alterations in a newly synthesized Paspalum notatum autotetraploid

inferred← citeshttps://doi.org/10.1016/j.plantsci.2006.12.012openalex-snapshot

Genetic relationships of D-genome species based on two types of EST-SSR markers derived from G. arboreum and G. raimondii in Gossypium

inferred← citeshttps://doi.org/10.1016/j.plantsci.2007.01.002openalex-snapshot

Epigenetic inheritance and variation of DNA methylation level and pattern in maize intra-specific hybrids

inferred← citeshttps://doi.org/10.1016/j.plantsci.2007.02.001openalex-snapshot

Genome rearrangements derived from autopolyploidization in Paspalum sp.

inferred← citeshttps://doi.org/10.1016/j.plantsci.2007.09.012openalex-snapshot

Brassica oleracea displays a high level of DNA methylation polymorphism

inferred← citeshttps://doi.org/10.1016/j.plantsci.2008.12.007openalex-snapshot

EST-SSR sequences revealed the relationship of D-genome in diploid and tetraploid Species in Gossypium

inferred← citeshttps://doi.org/10.1016/j.pmpp.2015.06.001openalex-snapshot

DNA methylation changes in fusarium wilt resistant and sensitive chickpea genotypes (Cicer arietinum L.)

inferred← citeshttps://doi.org/10.1016/j.pnsc.2007.09.006openalex-snapshot

Genomic and genic sequence variation in synthetic hexaploid wheat (AABBDD) as compared to their parental species

inferred← citeshttps://doi.org/10.1016/j.scienta.2014.06.029openalex-snapshot

Phenotypic and genetic variation occurred during wide hybridisation and allopolyploidisation between Brassica rapa and Brassica nigra

inferred← citeshttps://doi.org/10.1016/j.scienta.2021.110713openalex-snapshot

Effects of ploidy variation on DNA methylation and gene expression in Pear (Pyrus communis L.)

inferred← citeshttps://doi.org/10.1016/j.tig.2003.09.005openalex-snapshot

Effects of reunited diverged regulatory hierarchies in allopolyploids and species hybrids

inferred← citeshttps://doi.org/10.1016/j.tig.2005.07.009openalex-snapshot

Novel patterns of gene expression in polyploid plants

inferred← citeshttps://doi.org/10.1016/j.tplants.2010.05.003openalex-snapshot

A triptych of the evolution of plant transposable elements

inferred← citeshttps://doi.org/10.1016/j.ygeno.2019.09.010openalex-snapshot

Interspecific hybridisation and LTR-retrotransposon mobilisation-related structural variation in plants: A case study

inferred← citeshttps://doi.org/10.1016/j.ympev.2003.07.004openalex-snapshot

Evolutionary dynamics of duplicated genes in plants

inferred← citeshttps://doi.org/10.1016/s0065-2113(02)78004-8openalex-snapshot

Polyploidy and the evolutionary history of cotton

inferred← citeshttps://doi.org/10.1016/s0168-9525(01)02545-8openalex-snapshot

Genomic change and gene silencing in polyploids

inferred← citeshttps://doi.org/10.1016/s0168-9525(03)00015-5openalex-snapshot

Understanding mechanisms of novel gene expression in polyploids

inferred← citeshttps://doi.org/10.1016/s0960-9822(01)00556-5openalex-snapshot

Polyploid evolution: Keeping the peace at genomic reunions

inferred← citeshttps://doi.org/10.1016/s1055-7903(03)00213-6openalex-snapshot

Epigenetic phenomena and the evolution of plant allopolyploids

inferred← citeshttps://doi.org/10.1016/s1673-8527(08)60143-5openalex-snapshot

Rapid genomic changes in polyploid wheat and related species: implications for genome evolution and genetic improvement

inferred← citeshttps://doi.org/10.1016/s1673-8527(09)60091-6openalex-snapshot

Generality and characteristics of genetic and epigenetic changes in newly synthesized allotetraploid wheat lines

inferred← citeshttps://doi.org/10.1016/s2095-3119(15)61277-1openalex-snapshot

Analysis of cytosine methylation in early generations of resynthesized Brassica napus

inferred← citeshttps://doi.org/10.1016/s2095-3119(16)61462-4openalex-snapshot

Rapid gene expression change in a novel synthesized allopolyploid population of cultivated peanut×Arachis doigoi cross by cDNA-SCoT and HFO-TAG technique

inferred← citeshttps://doi.org/10.1017/s1477200007002381openalex-snapshot

Plant evolution by means of hybridization

inferred← citeshttps://doi.org/10.1023/a:1022883709060openalex-snapshot

FISH analysis of meiosis in Arabidopsis allopolyploids

inferred← citeshttps://doi.org/10.1023/a:1023965400532openalex-snapshot

Allopolyploidy alters gene expression in the highly stable hexaploid wheat

inferred← citeshttps://doi.org/10.1038/hdy.2009.192openalex-snapshot

Gene copy number evolution during tetraploid cotton radiation

inferred← citeshttps://doi.org/10.1038/hdy.2009.61openalex-snapshot

The complex nature of allopolyploid plant genomes

inferred← citeshttps://doi.org/10.1038/hdy.2013.94openalex-snapshot

Genetic and epigenetic changes in a genomic region containing MIR172 in Arabidopsis allopolyploids and their progenitors

inferred← citeshttps://doi.org/10.1038/leu.2011.128openalex-snapshot

Genomic profiling in Down syndrome acute lymphoblastic leukemia identifies histone gene deletions associated with altered methylation profiles

inferred← citeshttps://doi.org/10.1038/nbt.3207openalex-snapshot

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

inferred← citeshttps://doi.org/10.1038/nbt.3217openalex-snapshot

Unraveling the fabric of polyploidy

inferred← citeshttps://doi.org/10.1038/nn1230openalex-snapshot

Progress in the use of microarray technology to study the neurobiology of disease

inferred← citeshttps://doi.org/10.1038/s41467-019-10820-xopenalex-snapshot

Extensive intraspecific gene order and gene structural variations in upland cotton cultivars

inferred← citeshttps://doi.org/10.1038/s41559-021-01525-wopenalex-snapshot

Gradual evolution of allopolyploidy in Arabidopsis suecica

inferred← citeshttps://doi.org/10.1038/s41598-018-29181-4openalex-snapshot

Stress related epigenetic changes may explain opportunistic success in biological invasions in Antipode mussels

inferred← citeshttps://doi.org/10.1038/sj.hdy.6800317openalex-snapshot

Plant polyploidy: gene expression and genetic redundancy

inferred← citeshttps://doi.org/10.1038/sj.tpj.6500243openalex-snapshot

A cluster of differentially expressed signal transduction genes identified by microarray analysis in a rat genetic model of alcoholism

inferred← citeshttps://doi.org/10.1046/j.1095-8339.2002.00076.xopenalex-snapshot

Molecular evidence for the hybrid origin of a new endemic species of Stylosanthes Sw. (Fabaceae) from the Mexican Yucatán Peninsula

inferred← citeshttps://doi.org/10.1046/j.1365-313x.2002.01318.xopenalex-snapshot

Six active phage‐type RNA polymerase genes in Nicotiana tabacum

inferred← citeshttps://doi.org/10.1046/j.1469-8137.2003.00889.xopenalex-snapshot

Speciation – a rebirth

inferred← citeshttps://doi.org/10.1046/j.1469-8137.2003.00926.xopenalex-snapshot

Hybridization, polyploidy and speciation inSpartina(Poaceae)

inferred← citeshttps://doi.org/10.1046/j.1469-8137.2003.00948.xopenalex-snapshot

Advances in the study of polyploidy sincePlant speciation

inferred← citeshttps://doi.org/10.1073/pnas.0407258102openalex-snapshot

Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome

inferred← citeshttps://doi.org/10.1073/pnas.0430973100openalex-snapshot

Domain-selective small-molecule inhibitor of histone deacetylase 6 (HDAC6)-mediated tubulin deacetylation

inferred← citeshttps://doi.org/10.1073/pnas.0630618100openalex-snapshot

Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

inferred← citeshttps://doi.org/10.1073/pnas.0705499104openalex-snapshot

Protein 4.1B suppresses prostate cancer progression and metastasis

inferred← citeshttps://doi.org/10.1073/pnas.0831050100openalex-snapshot

What happens to genes in duplicated genomes

inferred← citeshttps://doi.org/10.1073/pnas.1512955113openalex-snapshot

Genomic incompatibilities in the diploid and tetraploid offspring of the goldfish × common carp cross

inferred← citeshttps://doi.org/10.1073/pnas.1515170112openalex-snapshot

Autotetraploid rice methylome analysis reveals methylation variation of transposable elements and their effects on gene expression

inferred← citeshttps://doi.org/10.1074/jbc.m303093200openalex-snapshot

Expression Patterns of α2,3-Sialyltransferases and α1,3-Fucosyltransferases Determine the Mode of Sialyl Lewis X Inhibition by Disaccharide Decoys

inferred← citeshttps://doi.org/10.1074/jbc.m314192200openalex-snapshot

LGI1, a Putative Tumor Metastasis Suppressor Gene, Controls in Vitro Invasiveness and Expression of Matrix Metalloproteinases in Glioma Cells through the ERK1/2 Pathway

inferred← citeshttps://doi.org/10.1080/00087114.2013.857830openalex-snapshot

Parental origin and genomic evolution of tetraploidGossypiumspecies by molecular marker and GISH analyses

inferred← citeshttps://doi.org/10.1080/07352680490273239openalex-snapshot

From Diploids to Allopolyploids: The Emergence of Efficient Pairing Control Genes in Plants

inferred← citeshttps://doi.org/10.1086/680725openalex-snapshot

Epigenetic Patterns in Genetically Imbalanced Polyploid Dog Rose Hybrids (Rosa L. sect. Caninae (DC.) Ser.) Revealed by c DNA–Amplified Fragment Length Polymorphisms and Methylation-Sensitive Amplified Polymorphisms

inferred← citeshttps://doi.org/10.1093/aob/mcac024openalex-snapshot

Does one subgenome become dominant in the formation and evolution of a polyploid?

inferred← citeshttps://doi.org/10.1093/aob/mch172openalex-snapshot

The Effect of Stress on Genome Regulation and Structure

inferred← citeshttps://doi.org/10.1093/aob/mci199openalex-snapshot

Genetic Variation in Echinacea angustifolia Along a Climatic Gradient

inferred← citeshttps://doi.org/10.1093/aob/mci259openalex-snapshot

Contributions of Domesticated Plant Studies to our Understanding of Plant Evolution

inferred← citeshttps://doi.org/10.1093/aob/mcn019openalex-snapshot

Evolution of rDNA in Nicotiana Allopolyploids: A Potential Link between rDNA Homogenization and Epigenetics

inferred← citeshttps://doi.org/10.1093/aob/mcn026openalex-snapshot

Genomic Origin and Organization of the Allopolyploid Primula egaliksensis Investigated by in situ Hybridization

inferred← citeshttps://doi.org/10.1093/aob/mcp058openalex-snapshot

Phenotypic, genetic and genomic consequences of natural and synthetic polyploidization of Nicotiana attenuata and Nicotiana obtusifolia

inferred← citeshttps://doi.org/10.1093/aob/mcz058openalex-snapshot

A new biological species in the Mercurialis annua polyploid complex: functional divergence in inflorescence morphology and hybrid sterility

inferred← citeshttps://doi.org/10.1093/gbe/evu008openalex-snapshot

Rapid Genetic and Epigenetic Alterations under Intergeneric Genomic Shock in Newly Synthesized Chrysanthemum morifolium × Leucanthemum paludosum Hybrids (Asteraceae)

inferred← citeshttps://doi.org/10.1093/gbe/evy165openalex-snapshot

Whole Genome Incorporation and Epigenetic Stability in a Newly Synthetic Allopolyploid of Gynogenetic Gibel Carp

inferred← citeshttps://doi.org/10.1093/genetics/166.4.1935openalex-snapshot

Dynamic Changes in the Distribution of a Satellite Homologous to Intergenic 26-18S rDNA Spacer in the Evolution of Nicotiana

inferred← citeshttps://doi.org/10.1093/jhered/esl023openalex-snapshot

Infraspecific DNA Methylation Polymorphism in Cotton (Gossypium hirsutum L.)

inferred← citeshttps://doi.org/10.1093/jhered/esq001openalex-snapshot

Comparative Mapping Reveals Autosomal Origin of Sex Chromosome in Octoploid Fragaria virginiana

inferred← citeshttps://doi.org/10.1093/molbev/msg065openalex-snapshot

Rate Variation Among Nuclear Genes and the Age of Polyploidy in Gossypium

inferred← citeshttps://doi.org/10.1093/molbev/msr112openalex-snapshot

Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived Repetitive DNAs

inferred← citeshttps://doi.org/10.1093/molbev/msz007openalex-snapshot

Assessing the Response of Small RNA Populations to Allopolyploidy Using Resynthesized Brassica napus Allotetraploids

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a004119openalex-snapshot

Differential Evolutionary Dynamics of Duplicated Paralogous Adh Loci in Allotetraploid Cotton (Gossypium)

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a004182openalex-snapshot

Retrotransposons and Genomic Stability in Populations of the Young Allopolyploid Species Spartina anglica C.E. Hubbard (Poaceae)

inferred← citeshttps://doi.org/10.1093/plphys/kiae434openalex-snapshot

Regional active transcription associates with homoeologous exchange breakpoints in synthetic Brassica tetraploids

inferred← citeshttps://doi.org/10.1097/00001622-200207000-00007openalex-snapshot

cDNA microarray analysis of global gene expression in sarcomas

inferred← citeshttps://doi.org/10.1097/pdm.0b013e31804f54a9openalex-snapshot

Gene Expression Profiling of Epstein-Barr Virus-positive and -negative Monomorphic B-cell Posttransplant Lymphoproliferative Disorders

inferred← citeshttps://doi.org/10.1098/rstb.2003.1305openalex-snapshot

Do the different “heteromes” cause genomic shock in newly formed allopolyploids?

inferred← citeshttps://doi.org/10.1101/2023.06.27.543697openalex-snapshot

Variations in Homoeologous Dosage and Epigenomics Mark the Early Evolution of Synthetic Brassica Tetraploids

inferred← citeshttps://doi.org/10.1101/738229openalex-snapshot

Considering founding and variable genomes is critical in studying polyploid evolution

inferred← citeshttps://doi.org/10.1101/gr.3907305openalex-snapshot

Comparative genomics of Gossypium and Arabidopsis: Unraveling the consequences of both ancient and recent polyploidy

inferred← citeshttps://doi.org/10.1104/pp.104.056010openalex-snapshot

Antisense Suppression of a (+)-δ-Cadinene Synthase Gene in Cotton Prevents the Induction of This Defense Response Gene during Bacterial Blight Infection But Not Its Constitutive Expression

inferred← citeshttps://doi.org/10.1104/pp.105.066308openalex-snapshot

Patterns of Sequence Loss and Cytosine Methylation within a Population of Newly Resynthesized Brassica napus Allopolyploids

inferred← citeshttps://doi.org/10.1104/pp.107.107672openalex-snapshot

Toward Sequencing Cotton ( Gossypium ) Genomes: Figure 1.

inferred← citeshttps://doi.org/10.1105/tpc.113.120626openalex-snapshot

The BOY NAMED SUE Quantitative Trait Locus Confers Increased Meiotic Stability to an Adapted Natural Allopolyploid of Arabidopsis

inferred← citeshttps://doi.org/10.1105/tpc.13.8.1699openalex-snapshot

A Sense of Self

inferred← citeshttps://doi.org/10.1111/bij.12154openalex-snapshot

Molecular analysis of genomic changes in synthetic autotetraploidPhlox drummondii Hook

inferred← citeshttps://doi.org/10.1111/evo.12678openalex-snapshot

Speciation by genome duplication: Repeated origins and genomic composition of the recently formed allopolyploid speciesMimulus peregrinus

inferred← citeshttps://doi.org/10.1111/j.0014-3820.2006.tb01132.xopenalex-snapshot

CRYPTIC INTERSPECIFIC INTROGRESSION AND GENETIC DIFFERENTIATION WITHIN GOSSYPIUM ARIDUM (MALVACEAE) AND ITS RELATIVES

inferred← citeshttps://doi.org/10.1111/j.1095-8312.2004.00334.xopenalex-snapshot

Spartina anglica C. E. Hubbard: a natural model system for analysing early evolutionary changes that affect allopolyploid genomes

inferred← citeshttps://doi.org/10.1111/j.1095-8312.2004.00342.xopenalex-snapshot

Exploring the genomic mysteries of polyploidy in cotton

inferred← citeshttps://doi.org/10.1111/j.1095-8312.2004.00343.xopenalex-snapshot

Evolution of the perennial soybean polyploid complex (Glycine subgenus Glycine): a study of contrasts

inferred← citeshttps://doi.org/10.1111/j.1095-8312.2004.00344.xopenalex-snapshot

Genome evolution in allotetraploid Nicotiana

inferred← citeshttps://doi.org/10.1111/j.1095-8312.2004.00349.xopenalex-snapshot

Genome downsizing in polyploid plants

inferred← citeshttps://doi.org/10.1111/j.1095-8339.2008.00831.xopenalex-snapshot

Wild and agronomically importantAgavespecies (Asparagaceae) show proportional increases in chromosome number, genome size, and genetic markers with increasing ploidy

inferred← citeshttps://doi.org/10.1111/j.1365-294x.2005.02488.xopenalex-snapshot

Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae)

inferred← citeshttps://doi.org/10.1111/j.1365-294x.2006.02775.xopenalex-snapshot

Microarray analysis reveals differential gene expression in hybrid sunflower species

inferred← citeshttps://doi.org/10.1111/j.1365-294x.2007.03169.xopenalex-snapshot

Population decline despite high genetic diversity in the new allopolyploid speciesSenecio cambrensis(Asteraceae)

inferred← citeshttps://doi.org/10.1111/j.1365-294x.2010.04926.xopenalex-snapshot

Nonadditive changes to cytosine methylation as a consequence of hybridization and genome duplication in Senecio (Asteraceae)

inferred← citeshttps://doi.org/10.1111/j.1365-313x.2004.02297.xopenalex-snapshot

Genomic changes in synthetic Arabidopsis polyploids

inferred← citeshttps://doi.org/10.1111/j.1365-313x.2006.02776.xopenalex-snapshot

Innovation in anti‐herbivore defense systems during neopolypoloidy – the functional consequences of instantaneous speciation

inferred← citeshttps://doi.org/10.1111/j.1365-313x.2006.02841.xopenalex-snapshot

Homoeologous gene silencing in hexaploid wheat

inferred← citeshttps://doi.org/10.1111/j.1365-313x.2007.03082.xopenalex-snapshot

Orthologous comparison in a gene‐rich region among grasses reveals stability in the sugarcane polyploid genome

inferred← citeshttps://doi.org/10.1111/j.1365-313x.2010.04251.xopenalex-snapshot

Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza

inferred← citeshttps://doi.org/10.1111/j.1365-313x.2011.04628.xopenalex-snapshot

Additive inheritance of histone modifications in Arabidopsis thaliana intra‐specific hybrids

inferred← citeshttps://doi.org/10.1111/j.1365-313x.2012.04914.xopenalex-snapshot

Non‐random distribution of extensive chromosome rearrangements in Brassica napus depends on genome organization

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