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The correlation between rDNA copy number and genome size in eukaryotes

https://doi.org/10.1139/g02-103
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/pl00006561openalex-snapshot
Intron–Genome Size Relationship on a Large Evolutionary Scale
inferredcites →https://doi.org/10.1007/s002489900162openalex-snapshot
Prokaryotic Genome Size and SSU rDNA Copy Number: Estimation of Microbial Relative Abundance from a Mixed Population
inferredcites →https://doi.org/10.1016/0092-8674(79)90231-9openalex-snapshot
Expression of ribosomal DNA insertions in drosophila melanogaster
inferredcites →https://doi.org/10.1016/j.femsec.2004.10.006openalex-snapshot
Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene
inferredcites →https://doi.org/10.1016/j.foreco.2004.05.009openalex-snapshot
Ecology and genetics of tree invasions: from recent introductions to Quaternary migrations
inferredcites →https://doi.org/10.1016/j.gde.2004.09.007openalex-snapshot
Evolution of genome size: multilevel selection, mutation bias or dynamical chaos?
inferredcites →https://doi.org/10.1016/s0079-6603(08)60332-3openalex-snapshot
The Ribosomal RNA Cistrons
inferredcites →https://doi.org/10.1016/s0079-6603(08)60511-5openalex-snapshot
Regulation of RNA Polymerase I Transcription in Yeast and Vertebrates
inferredcites →https://doi.org/10.1017/s1464793100005595openalex-snapshot
Coincidence, coevolution, or causation? DNA content, cell size, and the C-value enigma
inferredcites →https://doi.org/10.1083/jcb.91.3.3sopenalex-snapshot
Chromosome structure and the C-value paradox.
inferredcites →https://doi.org/10.1093/genetics/111.4.805openalex-snapshot
THE MOLECULAR THROUGH ECOLOGICAL GENETICS OF ABNORMAL ABDOMEN IN DROSOPHILA MERCATORUM. I. BASIC GENETICS
inferredcites →https://doi.org/10.1093/genetics/54.3.819openalex-snapshot
A MOLECULAR EXPLANATION OF THE BOBBED MUTANTS OF DROSOPHILA AS PARTIAL DEFICIENCIES OF "RIBOSOMAL" DNA
inferredcites →https://doi.org/10.1093/jhered/esi018openalex-snapshot
In Situ Chromosomal Localization of rDNA Sites in “Safed Musli” Chlorophytum Ker-Gawl and Their Physical Measurement by Fiber FISH
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040702openalex-snapshot
Five major nuclear ribosomal repeats represent a large and variable fraction of the genomic DNA of Picea rubens and P. mariana.
inferredcites →https://doi.org/10.1101/gad.12.24.3821openalex-snapshot
Expansion and contraction of ribosomal DNA repeats in Saccharomyces cerevisiae: requirement of replication fork blocking (Fob1) protein and the role of RNA polymerase I
inferredcites →https://doi.org/10.1104/pp.55.3.496openalex-snapshot
The Relationship between Satellite Deoxyribonucleic Acid, Ribosomal Ribonucleic Acid Gene Redundancy, and Genome Size in Plants
inferredcites →https://doi.org/10.1111/j.1550-7408.2004.tb00158.xopenalex-snapshot
Comparative Genomics of Pneumocystis carinii with Other Protists: Implications for Life Style1
inferredcites →https://doi.org/10.1128/mcb.19.7.4953openalex-snapshot
Transcriptional Activity and Chromatin Structure of Enhancer-Deleted rRNA Genes in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1139/b96-035openalex-snapshot
Changes in nuclear genome size and relative ribosomal RNA gene content in cambial region cells ofAbies balsameashoots during the development of dormancy
inferredcites →https://doi.org/10.1146/annurev.bi.49.070180.003455openalex-snapshot
Repeated Genes in Eukaryotes

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Sequencing our way towards understanding global eukaryotic biodiversity
inferred← citeshttps://doi.org/10.1016/j.ttbdis.2018.12.004openalex-snapshot
Development and validation of a multiplex, real-time PCR assay for Babesia rossi and Babesia vogeli
inferred← citeshttps://doi.org/10.1016/j.watres.2018.09.011openalex-snapshot
Dynamics and determinants of amoeba community, occurrence and abundance in subtropical reservoirs and rivers
inferred← citeshttps://doi.org/10.1016/j.watres.2019.114941openalex-snapshot
Phytoplankton growth characterization in short term MPN culture assays using 18S metabarcoding and qRT-PCR
inferred← citeshttps://doi.org/10.1016/j.watres.2022.118488openalex-snapshot
Composition and spatial-temporal dynamics of phytoplankton community shaped by environmental selection and interactions in the Jiaozhou Bay
inferred← citeshttps://doi.org/10.1016/j.ygeno.2022.110430openalex-snapshot
A new method for determining ribosomal DNA copy number shows differences between Saccharomyces cerevisiae populations
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.06.017openalex-snapshot
Screening intragenomic rDNA for dominant variants can provide a consistent retrieval of evolutionarily persistent ITS (rDNA) sequences
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.03.020openalex-snapshot
Polymorphism and evolution of ribosomal DNA in tea (Camellia sinensis, Theaceae)
inferred← citeshttps://doi.org/10.1016/s2095-3119(18)61967-7openalex-snapshot
Intergenic spacer 1 (IGS1) polymorphism map: A marker for the initial classification of cultivated Lentinula edodes strains in China
inferred← citeshttps://doi.org/10.1021/acs.est.0c06991openalex-snapshot
Identifying the Source Organisms Producing Paralytic Shellfish Toxins in a Subtropical Bay in the South China Sea
inferred← citeshttps://doi.org/10.1021/acs.est.7b04152openalex-snapshot
In Situ Stimulation of Thiocyanate Biodegradation through Phosphate Amendment in Gold Mine Tailings Water
inferred← citeshttps://doi.org/10.1021/acs.jafc.5b00874openalex-snapshot
Food Targeting: A Real-Time PCR Assay Targeting 16S rDNA for Direct Quantification of Alicyclobacillus spp. Spores after Aptamer-Based Enrichment
inferred← citeshttps://doi.org/10.1021/acsomega.4c05509openalex-snapshot
Conception and Optimization of Extraction-Free Loop-Mediated Isothermal Amplification Detection of Dry Rot Fungus Serpula lacrymans
inferred← citeshttps://doi.org/10.1021/es506158mopenalex-snapshot
Environmental Monitoring: Inferring the Diatom Index from Next-Generation Sequencing Data
inferred← citeshttps://doi.org/10.1021/jf3052175openalex-snapshot
Real-Time PCR Assays for the Quantitation of rDNA from Apricot and Other Plant Species in Marzipan
inferred← citeshttps://doi.org/10.1038/hdy.2013.135openalex-snapshot
Disparate molecular evolution of two types of repetitive DNAs in the genome of the grasshopper Eyprepocnemis plorans
inferred← citeshttps://doi.org/10.1038/ismej.2010.155openalex-snapshot
Capturing diversity of marine heterotrophic protists: one cell at a time
inferred← citeshttps://doi.org/10.1038/ismej.2010.25openalex-snapshot
Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts
inferred← citeshttps://doi.org/10.1038/ismej.2012.36openalex-snapshot
Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing
inferred← citeshttps://doi.org/10.1038/nature07743openalex-snapshot
Population genomics of domestic and wild yeasts
inferred← citeshttps://doi.org/10.1038/ncomms5850openalex-snapshot
Ribosomal DNA copy number is coupled with gene expression variation and mitochondrial abundance in humans
inferred← citeshttps://doi.org/10.1038/s41396-018-0057-5openalex-snapshot
Cryptophyta as major bacterivores in freshwater summer plankton
inferred← citeshttps://doi.org/10.1038/s41396-018-0097-xopenalex-snapshot
Short-term dynamics and interactions of marine protist communities during the spring–summer transition
inferred← citeshttps://doi.org/10.1038/s41396-018-0163-4openalex-snapshot
Linking patterns of net community production and marine microbial community structure in the western North Atlantic
inferred← citeshttps://doi.org/10.1038/s41396-018-0172-3openalex-snapshot
Temporal dynamics of eukaryotic microbial diversity at a coastal Pacific site
inferred← citeshttps://doi.org/10.1038/s41396-019-0506-9openalex-snapshot
Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean
inferred← citeshttps://doi.org/10.1038/s41396-019-0525-6openalex-snapshot
Transient exposure to novel high temperatures reshapes coastal phytoplankton communities
inferred← citeshttps://doi.org/10.1038/s41437-018-0088-8openalex-snapshot
nrDNA:mtDNA copy number ratios as a comparative metric for evolutionary and conservation genetics
inferred← citeshttps://doi.org/10.1038/s41437-023-00634-5openalex-snapshot
Intragenomic rDNA variation - the product of concerted evolution, mutation, or something in between?
inferred← citeshttps://doi.org/10.1038/s41467-021-25646-9openalex-snapshot
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole
inferred← citeshttps://doi.org/10.1038/s41467-022-35551-4openalex-snapshot
Effects of phytoplankton, viral communities, and warming on free-living and particle-associated marine prokaryotic community structure
inferred← citeshttps://doi.org/10.1038/s41598-017-04016-wopenalex-snapshot
Deciphering biodiversity and interactions between bacteria and microeukaryotes within epilithic biofilms from the Loue River, France
inferred← citeshttps://doi.org/10.1038/s41598-018-35785-7openalex-snapshot
Chromosomal markers in the genus Karenia: Towards an understanding of the evolution of the chromosomes, life cycle patterns and phylogenetic relationships in dinoflagellates
inferred← citeshttps://doi.org/10.1038/s41598-019-45146-7openalex-snapshot
Eukaryotic and cyanobacterial communities associated with marine snow particles in the oligotrophic Sargasso Sea
inferred← citeshttps://doi.org/10.1038/s41598-020-80829-6openalex-snapshot
Empirical evidence for concerted evolution in the 18S rDNA region of the planktonic diatom genus Chaetoceros
inferred← citeshttps://doi.org/10.1038/s41598-021-03303-xopenalex-snapshot
Phytoplankton settling quality has a subtle but significant effect on sediment microeukaryotic and bacterial communities
inferred← citeshttps://doi.org/10.1038/s41598-021-91665-7openalex-snapshot
Large-scale comparative analysis of cytogenetic markers across Lepidoptera
inferred← citeshttps://doi.org/10.1038/s42003-018-0094-7openalex-snapshot
Evidence of non-tandemly repeated rDNAs and their intragenomic heterogeneity in Rhizophagus irregularis
inferred← citeshttps://doi.org/10.1038/s42003-026-09598-8openalex-snapshot
Genome sequence assembly of the 5S rDNA loci informs haplotype specificity and evolution in the greater duckweed Spirodela polyrhiza
inferred← citeshttps://doi.org/10.1038/s43705-023-00274-0openalex-snapshot
Genomic copy number variability at the genus, species and population levels impacts in situ ecological analyses of dinoflagellates and harmful algal blooms
inferred← citeshttps://doi.org/10.1038/srep03194openalex-snapshot
A DNA-based method for studying root responses to drought in field-grown wheat genotypes
inferred← citeshttps://doi.org/10.1038/srep22926openalex-snapshot
Peltaster fructicola genome reveals evolution from an invasive phytopathogen to an ectophytic parasite
inferred← citeshttps://doi.org/10.1051/kmae:2006035openalex-snapshot
GENETIC DIFFERENCES AMONG NOBLE CRAYFISH (ASTACUS ASTACUS) STOCKS IN FINLAND, SWEDEN AND ESTONIA BASED ON THE ITS1 REGION
inferred← citeshttps://doi.org/10.1071/bt06087openalex-snapshot
Karyotype of Araucaria angustifolia and the decondensation/activation mode of its nucleolus organiser region
inferred← citeshttps://doi.org/10.1073/pnas.1416878112openalex-snapshot
Concerted copy number variation balances ribosomal DNA dosage in human and mouse genomes
inferred← citeshttps://doi.org/10.1080/00087114.2013.829690openalex-snapshot
Genome size variation and evolution in the family Asteraceae
inferred← citeshttps://doi.org/10.1080/0028825x.2014.888087openalex-snapshot
Variation in rDNA loci of polyploid Solanum elaeagnifolium (Solanaceae)
inferred← citeshttps://doi.org/10.1080/09670262.2015.1077395openalex-snapshot
rRNA and rDNA based assessment of sea ice protist biodiversity from the central Arctic Ocean
inferred← citeshttps://doi.org/10.1080/11263504.2015.1018982openalex-snapshot
The 18S–25S ribosomal RNA unit of yerba mate ( Ilex paraguariensis A. St.-Hil.)
inferred← citeshttps://doi.org/10.1080/15592294.2019.1649930openalex-snapshot
Human rDNA copy number is unstable in metastatic breast cancers
inferred← citeshttps://doi.org/10.1080/17451000.2015.1084425openalex-snapshot
Marine microbial community structure assessed from combined metagenomic analysis and ribosomal amplicon deep-sequencing
inferred← citeshttps://doi.org/10.1080/20964129.2022.2133637openalex-snapshot
Spatiotemporal distribution of size-fractioned phytoplankton in the Yalu River Estuary, China
inferred← citeshttps://doi.org/10.1086/bblv227n2p93openalex-snapshot
Next-Generation Environmental Diversity Surveys of Foraminifera: Preparing the Future
inferred← citeshttps://doi.org/10.1093/aob/mci009openalex-snapshot
The C-value Enigma in Plants and Animals: A Review of Parallels and an Appeal for Partnership
inferred← citeshttps://doi.org/10.1093/aob/mcq011openalex-snapshot
Stomatal vs. genome size in angiosperms: the somatic tail wagging the genomic dog?
inferred← citeshttps://doi.org/10.1093/aob/mcq258openalex-snapshot
Nuclear DNA amounts in angiosperms: targets, trends and tomorrow
inferred← citeshttps://doi.org/10.1093/aob/mcy172openalex-snapshot
Remarkable variation of ribosomal DNA organization and copy number in gnetophytes, a distinct lineage of gymnosperms
inferred← citeshttps://doi.org/10.1093/botlinnean/box049openalex-snapshot
The evolution of genome size and distinct distribution patterns of rDNA in Phalaenopsis (Orchidaceae)
inferred← citeshttps://doi.org/10.1093/femsec/fiw002openalex-snapshot
Biodiversity patterns of plankton assemblages at the extremes of the Red Sea
inferred← citeshttps://doi.org/10.1093/femsec/fiw050openalex-snapshot
Protistan diversity and activity inferred from RNA and DNA at a coastal ocean site in the eastern North Pacific
inferred← citeshttps://doi.org/10.1093/femsec/fiw200openalex-snapshot
Diversity and temporal patterns of planktonic protist assemblages at a Mediterranean Long Term Ecological Research site
inferred← citeshttps://doi.org/10.1093/femsec/fiw231openalex-snapshot
Planktonic protistan communities in lakes along a large-scale environmental gradient
inferred← citeshttps://doi.org/10.1093/femsec/fiy036openalex-snapshot
Biodiversity of biological soil crusts from the Polar Regions revealed by metabarcoding
inferred← citeshttps://doi.org/10.1093/g3journal/jkaf279openalex-snapshot
Copy number and sequence variation in ribosomal DNA and the transposon, Pokey , in mutation accumulation lines of Daphnia obtusa
inferred← citeshttps://doi.org/10.1093/gbe/evad090openalex-snapshot
The Role of Repetitive Sequences in Repatterning of Major Ribosomal DNA Clusters in Lepidoptera
inferred← citeshttps://doi.org/10.1093/gbe/evw307openalex-snapshot
Ribosomal RNA Genes Contribute to the Formation of Pseudogenes and Junk DNA in the Human Genome
inferred← citeshttps://doi.org/10.1093/icesjms/fsaa256openalex-snapshot
Metabarcoding reveals hidden species and improves identification of marine zooplankton communities in the North Sea
inferred← citeshttps://doi.org/10.1093/ismejo/wraf058openalex-snapshot
Longitudinal dynamics and cross-domain interactions of eukaryotic populations in wastewater treatment plants
inferred← citeshttps://doi.org/10.1093/jhered/esae004openalex-snapshot
Germline ecology: Managed herds, tolerated flocks, and pest control
inferred← citeshttps://doi.org/10.1093/jhered/esi018openalex-snapshot
In Situ Chromosomal Localization of rDNA Sites in “Safed Musli” Chlorophytum Ker-Gawl and Their Physical Measurement by Fiber FISH
inferred← citeshttps://doi.org/10.1093/jisesa/ieae094openalex-snapshot
Anatomy of a pest control failure: introgression of cytochrome P450 337B3 alleles from invasive old-world bollworm into native corn earworm (Lepidoptera: Noctuidae)
inferred← citeshttps://doi.org/10.1093/jisesa/iev137openalex-snapshot
Rapid Identification of Helicoverpa armigera and Helicoverpa zea (Lepidoptera: Noctuidae) Using Ribosomal RNA Internal Transcribed Spacer 1
inferred← citeshttps://doi.org/10.1093/jxb/ert366openalex-snapshot
Endoreduplication and fruit growth in tomato: evidence in favour of the karyoplasmic ratio theory
inferred← citeshttps://doi.org/10.1093/molbev/msab121openalex-snapshot
Asexuality Associated with Marked Genomic Expansion of Tandemly Repeated rRNA and Histone Genes
inferred← citeshttps://doi.org/10.1093/molbev/msae025openalex-snapshot
The Dynamic Interplay Between Ribosomal DNA and Transposable Elements: A Perspective From Genomics and Cytogenetics
inferred← citeshttps://doi.org/10.1093/molbev/msr303openalex-snapshot
Low Evolutionary Diversification in a Widespread and Abundant Uncultured Protist (MAST-4)
inferred← citeshttps://doi.org/10.1093/molbev/mss093openalex-snapshot
Accession-Specific Haplotypes of the Internal Transcribed Spacer Region in Arabidopsis thaliana--A Means for Barcoding Populations
inferred← citeshttps://doi.org/10.1093/molbev/msy046openalex-snapshot
An Evaluation of Function of Multicopy Noncoding RNAs in Mammals Using ENCODE/FANTOM Data and Comparative Genomics
inferred← citeshttps://doi.org/10.1093/mollus/eyu090openalex-snapshot
Karyological analysis and FISH physical mapping of 18S rDNA genes, (GATA)n centromeric and (TTAGGG)n telomeric sequences in Conus magus Linnaeus, 1758
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