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Multi-marker DNA metabarcoding reflects tardigrade diversity in different habitats

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ece3.5503openalex-snapshot
DNA metabarcoding adds valuable information for management of biodiversity in roadside stormwater ponds
inferredcites →https://doi.org/10.1002/edn3.7openalex-snapshot
Meta‐analysis supports further refinement of eDNA for monitoring aquatic species‐specific abundance in nature
inferredcites →https://doi.org/10.1007/s00300-015-1827-4openalex-snapshot
The influence of a seabird colony on abundance and species composition of water bears (Tardigrada) in Hornsund (Spitsbergen, Arctic)
inferredcites →https://doi.org/10.1007/s00374-005-0852-9openalex-snapshot
Predator–prey interaction in soil food web: functional response, size-dependent foraging efficiency, and the influence of soil texture
inferredcites →https://doi.org/10.1007/s10750-005-1405-9openalex-snapshot
A Large-scale, Multihabitat Inventory of the Phylum Tardigrada in the Great Smoky Mountains National Park, USA: A Preliminary Report
inferredcites →https://doi.org/10.1016/0076-6879(83)01005-8openalex-snapshot
[2] New M13 vectors for cloning
inferredcites →https://doi.org/10.1016/b978-0-12-374855-3.00014-5openalex-snapshot
Tardigrada
inferredcites →https://doi.org/10.1016/b978-0-12-385026-3.00017-6openalex-snapshot
Phylum Tardigrada
inferredcites →https://doi.org/10.1016/j.ympev.2004.04.017openalex-snapshot
Molecular phylogeny of Tardigrada—investigation of the monophyly of Heterotardigrada
inferredcites →https://doi.org/10.1016/j.ympev.2009.02.019openalex-snapshot
Fine scale population structure in the Echiniscus blumi-canadensis series (Heterotardigrada, Tardigrada) in an Iberian mountain range—When morphology fails to explain genetic structure
inferredcites →https://doi.org/10.1038/s41598-018-20366-5openalex-snapshot
Characterization of soil nematode communities in three cropping systems through morphological and DNA metabarcoding approaches
inferredcites →https://doi.org/10.1038/s41598-018-30157-7openalex-snapshot
Multi-marker metabarcoding approach to study mesozooplankton at basin scale
inferredcites →https://doi.org/10.1038/s42003-018-0119-2openalex-snapshot
Biodiversity estimates and ecological interpretations of meiofaunal communities are biased by the taxonomic approach
inferredcites →https://doi.org/10.1073/pnas.1209160109openalex-snapshot
The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna
inferredcites →https://doi.org/10.1078/0044-5231-00045openalex-snapshot
The Tardigrades of Emilia (Italy). III. Piane di Mocogno (Northern Apennines)
inferredcites →https://doi.org/10.1093/bioinformatics/btu531openalex-snapshot
AliView: a fast and lightweight alignment viewer and editor for large datasets
inferredcites →https://doi.org/10.1093/oso/9780198767220.001.0001openalex-snapshot
Environmental DNA
inferredcites →https://doi.org/10.1093/zoolinnean/zlz043openalex-snapshot
Environmental correlates of tardigrade community structure in mosses and lichens in the Great Smoky Mountains National Park (Tennessee and North Carolina, USA)
inferredcites →https://doi.org/10.1093/zoolinnean/zlz045openalex-snapshot
An integrated study of the biodiversity within the Pseudechiniscus suillus–facettalis group (Heterotardigrada: Echiniscidae)
inferredcites →https://doi.org/10.1098/rsbl.2003.0130openalex-snapshot
DNA taxonomy of a neglected animal phylum: an unexpected diversity of tardigrades
inferredcites →https://doi.org/10.1098/rsbl.2014.0562openalex-snapshot
DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match
inferredcites →https://doi.org/10.1101/gr.112730.110openalex-snapshot
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
inferredcites →https://doi.org/10.1111/1755-0998.12208openalex-snapshot
Recovery of DNA barcodes from blackfly museum specimens ( D iptera: S imuliidae) using primer sets that target a variety of sequence lengths
inferredcites →https://doi.org/10.1111/1755-0998.12355openalex-snapshot
Universal and blocking primer mismatches limit the use of high‐throughput DNA sequencing for the quantitative metabarcoding of arthropods
inferredcites →https://doi.org/10.1111/2041-210x.12789openalex-snapshot
Assessing strengths and weaknesses of DNA metabarcoding‐based macroinvertebrate identification for routine stream monitoring
inferredcites →https://doi.org/10.1111/aen.12384openalex-snapshot
DNA metabarcoding as a tool for invertebrate community monitoring: a case study comparison with conventional techniques
inferredcites →https://doi.org/10.1111/eva.12694openalex-snapshot
Metabarcoding using multiplexed markers increases species detection in complex zooplankton communities
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04480.xopenalex-snapshot
Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
inferredcites →https://doi.org/10.1111/mec.14350openalex-snapshot
Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
inferredcites →https://doi.org/10.1111/mec.14920openalex-snapshot
How quantitative is metabarcoding: A meta‐analytical approach
inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
inferredcites →https://doi.org/10.1128/aem.65.11.4715-4724.1999openalex-snapshot
Evaluation and Optimization of DNA Extraction and Purification Procedures for Soil and Sediment Samples
inferredcites →https://doi.org/10.1128/aem.71.12.7724-7736.2005openalex-snapshot
At Least 1 in 20 16S rRNA Sequence Records Currently Held in Public Repositories Is Estimated To Contain Substantial Anomalies
inferredcites →https://doi.org/10.11646/zootaxa.1589.1.4openalex-snapshot
Diphascon (Diphascon) faialense sp. nov. a new species of Tardigrada (Eutardigrada, Hypsibiidae) from the Azores and a key to the species of the D. pingue group
inferredcites →https://doi.org/10.11646/zootaxa.2404.1.1openalex-snapshot
Definition of families, subfamilies, genera and subgenera of the Eutardigrada, and keys to their identification
inferredcites →https://doi.org/10.11646/zootaxa.3104.1.3openalex-snapshot
An example of problems associated with DNA barcoding in tardigrades: a novel method for obtaining voucher specimens
inferredcites →https://doi.org/10.11646/zootaxa.3764.5.2openalex-snapshot
Aquatic tardigrades in the Great Smoky Mountains National Park, North Carolina and Tennessee, U.S.A., with the description of a new species of Thulinius (Tardigrada, Isohypsibiidae)
inferredcites →https://doi.org/10.11646/zootaxa.4363.1.4openalex-snapshot
The Macrobiotus hufelandi group (Tardigrada) revisited
inferredcites →https://doi.org/10.11646/zootaxa.845.1.1openalex-snapshot
Tardigrade taxonomy: an updated check list of the taxa and a list of characters for their identification
inferredcites →https://doi.org/10.1186/1471-2105-12-38openalex-snapshot
Removing Noise From Pyrosequenced Amplicons
inferredcites →https://doi.org/10.1186/gb-2011-12-1-r1openalex-snapshot
A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries
inferredcites →https://doi.org/10.1186/s40851-018-0113-zopenalex-snapshot
High diversity in species, reproductive modes and distribution within the Paramacrobiotus richtersi complex (Eutardigrada, Macrobiotidae)
inferredcites →https://doi.org/10.1371/journal.pone.0066213openalex-snapshot
A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System
inferredcites →https://doi.org/10.1371/journal.pone.0130324openalex-snapshot
Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.1656/1528-7092(2007)6[229:sbogsm]2.0.co;2openalex-snapshot
“Smoky Bears”—Tardigrades of Great Smoky Mountains National Park
inferredcites →https://doi.org/10.1890/0012-9658(2002)083[1271:tiomif]2.0.co;2openalex-snapshot
THE IMPORTANCE OF MEIOFAUNA IN FOOD WEBS: EVIDENCE FROM AN ACID STREAM
inferredcites →https://doi.org/10.2307/3226943openalex-snapshot
Molecular Analysis Supports a Tardigrade-Arthropod Association
inferredcites →https://doi.org/10.25431/11380_1178608openalex-snapshot
Actual checklist of Tardigrada species
inferredcites →https://doi.org/10.3354/meps005125openalex-snapshot
Similarity Indices in Community Studies: Potential Pitfalls
inferredcites →https://doi.org/10.3390/d12030110openalex-snapshot
Simultaneous Metabarcoding of Eukaryotes and Prokaryotes to Elucidate the Community Structures within Tardigrade Microhabitats
inferredcites →https://doi.org/10.3390/genes10060431openalex-snapshot
Single Fragment or Bulk Soil DNA Metabarcoding: Which is Better for Characterizing Biological Taxa Found in Surface Soils for Sample Separation?
inferredcites →https://doi.org/10.3897/mbmg.3.46704openalex-snapshot
Metabarcoding data allow for reliable biomass estimates in the most abundant animals on earth
inferredcites →https://doi.org/10.4081/jlimnol.2007.s1.104openalex-snapshot
An evaluation of species richness estimators for tardigrades of the Great Smoky Mountains National Park, Tennessee and North Carolina, USA
inferredcites →https://doi.org/10.5281/zenodo.15145663openalex-snapshot
Table 1 in A new Gammarus species from Xinjiang Uygur Autonomous Region (China) with a key to Xinjiang freshwater gammarids (Crustacea, Amphipoda, Gammaridae)
inferredcites →https://doi.org/10.5324/fn.v37i0.2269openalex-snapshot
A checklist of Norwegian Tardigrada
inferredcites →https://doi.org/10.7287/peerj.preprints.2044v5openalex-snapshot
Validation and development of COI metabarcoding primers for freshwater macroinvertebrate bioassessment
inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot
VSEARCH: a versatile open source tool for metagenomics
inferredcites →https://doi.org/10.7717/peerj.593openalex-snapshot
Swarm: robust and fast clustering method for amplicon-based studies

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s13127-024-00660-zzenodo-depositor-declared
Distribution of tardigrade cryptobiotic abilities across a fine-scale habitat gradient
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlad059zenodo-depositor-declared
Environmental DNA metabarcoding of Danish soil samples reveals new insight into the hidden diversity of eutardigrades in Denmark
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlad191zenodo-depositor-declared
Catch me if you can, or how paradigms of tardigrade biogeography evolved from cosmopolitism to ‘localism’
inferred← citeshttps://doi.org/10.2139/ssrn.4871792openalex-extracted
An Optimised Molecular-Based Method for Ecological Study of Tardigrades in Soils
inferred← citeshttps://doi.org/10.5852/ejt.2026.1055.3277zenodo-depositor-declared
Integrative taxonomy reveals four new species in the superdiverse genus Macrobiotus (Tardigrada: Eutardigrada: Macrobiotidae)
inferred← citeshttps://doi.org/10.1002/ece3.70045openalex-snapshot
A first look into moss living tardigrades in boreal peatlands
inferred← citeshttps://doi.org/10.1002/ece3.70770openalex-snapshot
Maximizing Identification Precision of Hymenoptera and Brachycera (Diptera) With a Non‐Destructive DNA Metabarcoding Approach
inferred← citeshttps://doi.org/10.1007/978-981-97-2367-6_12openalex-snapshot
Future Directions and Emerging Trends in Medicinal Plant DNA Barcoding
inferred← citeshttps://doi.org/10.1007/s00300-026-03549-zopenalex-snapshot
Hidden in arctic leaf litter: the first tardigrade species described from Dryas octopetala litter on Spitsbergen
inferred← citeshttps://doi.org/10.1007/s10750-022-04820-0openalex-snapshot
Desiccation risk favours prevalence and diversity of tardigrade communities and influences their trophic structure in alpine ephemeral rock pools
inferred← citeshttps://doi.org/10.1016/j.apsoil.2026.107444openalex-snapshot
Tardigrade is associated with ecosystem multifunctionality in subtropical forest soils of China
inferred← citeshttps://doi.org/10.1016/j.pedobi.2026.151161openalex-snapshot
Ecological patterns of tardigrades in Svalbard's leaf litter
inferred← citeshttps://doi.org/10.1016/j.soilbio.2024.109506openalex-snapshot
Distribution of soil tardigrades as revealed by molecular identification across a large-scale area of Australia
inferred← citeshttps://doi.org/10.1016/j.soilbio.2024.109597openalex-snapshot
An optimised molecular-based method for ecological study of tardigrades in soils
inferred← citeshttps://doi.org/10.1016/j.soilbio.2025.110080openalex-snapshot
Membrane filtration as an effective alternative to manual isolation for soil tardigrade DNA extraction
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107707openalex-snapshot
Expanding Acutuncus: Phylogenetics and morphological analyses reveal a considerably wider distribution for this tardigrade genus
inferred← citeshttps://doi.org/10.1017/s0954102022000384openalex-snapshot
Soil environmental DNA metabarcoding in low-biomass regions requires protocol optimization: a case study in Antarctica
inferred← citeshttps://doi.org/10.1038/s41586-025-09991-zopenalex-snapshot
Pesticide residues alter taxonomic and functional biodiversity in soils
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlad136openalex-snapshot
Tardigrade diversity and community composition across Norwegian boreal forests
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlag086openalex-snapshot
Flooded paddy soils exhibit higher tardigrade diversity than adjacent upland soils
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlag100openalex-snapshot
Traces in the moss: investigating tardigrade communities across elevational and urbanization zones with environmental DNA
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlag106openalex-snapshot
A fractured homecoming: Fractonotus reinstated in Calohypsibiidae (Eutardigrada: Hypsibioidea)
inferred← citeshttps://doi.org/10.1098/rsos.201388openalex-snapshot
A novel metabarcoding primer pair for environmental DNA analysis of Cephalopoda (Mollusca) targeting the nuclear 18S rRNA region
inferred← citeshttps://doi.org/10.1111/1749-4877.12972openalex-snapshot
COI Metabarcoding with a Curated Reference Database and Optimized Protocol Provides a Reliable Species‐Level Diversity Assessment of Tardigrades
inferred← citeshttps://doi.org/10.1111/1755-0998.13965openalex-snapshot
A set of nematode rRNA cistron databases and a primer assessment tool to enable more flexible and comprehensive metabarcoding
inferred← citeshttps://doi.org/10.1111/geb.70167openalex-snapshot
Human Impact on Microinvertebrate Diversity and Distributions: Questioning the Resilience of Tardigrades
inferred← citeshttps://doi.org/10.1111/ivb.12360openalex-snapshot
How to culture limnoterrestrial heterotardigrades
inferred← citeshttps://doi.org/10.1111/jbi.15063openalex-snapshot
Community Analysis Reveals Biogeographical Patterns and Biodiversity Shortfalls in Antarctic Tardigrades
inferred← citeshttps://doi.org/10.1111/mec.70196openalex-snapshot
Deciphering the Patterns and Drivers of Tardigrade Diversity Along Altitudinal Gradients
inferred← citeshttps://doi.org/10.1186/s12862-025-02458-9openalex-snapshot
Tardigrade communities in pristine, drained and restored pine mire forests
inferred← citeshttps://doi.org/10.1186/s40851-023-00221-wopenalex-snapshot
Homology of the head sensory structures between Heterotardigrada and Eutardigrada supported in a new species of water bear (Ramazzottiidae: Ramazzottius)
inferred← citeshttps://doi.org/10.12794/metadc2356242openalex-snapshot
Diversity Patterns of Chilean Tardigrades: Exploring Alpha and Beta Diversities at Multiple Spatial Scales
inferred← citeshttps://doi.org/10.17216/limnofish.1833652openalex-snapshot
Kuzeybatı Türkiye’den (Düzce ve Zonguldak) yeni tardigrat kayıtları ve faunistik değerlendirme
inferred← citeshttps://doi.org/10.3389/fmars.2024.1276956openalex-snapshot
Advancing ecological assessment of the Arabian Gulf through eDNA metabarcoding: opportunities, prospects, and challenges
inferred← citeshttps://doi.org/10.3390/d14121086openalex-snapshot
Deep-Sea Tardigrades from the North-Western Pacific, with Descriptions of Two New Species
inferred← citeshttps://doi.org/10.6084/m9.figshare.24647272openalex-snapshot
Additional file 1 of Homology of the head sensory structures between Heterotardigrada and Eutardigrada supported in a new species of water bear (Ramazzottiidae: Ramazzottius)
inferred← citeshttps://doi.org/10.6084/m9.figshare.24647317openalex-snapshot
Additional file 2 of Homology of the head sensory structures between Heterotardigrada and Eutardigrada supported in a new species of water bear (Ramazzottiidae: Ramazzottius)
inferred← citeshttps://doi.org/10.6084/m9.figshare.26645530openalex-snapshot
Additional file 3 of Homology of the head sensory structures between Heterotardigrada and Eutardigrada supported in a new species of water bear (Ramazzottiidae: Ramazzottius)
inferred← citeshttps://doi.org/10.6084/m9.figshare.26645533openalex-snapshot
Additional file 4 of Homology of the head sensory structures between Heterotardigrada and Eutardigrada supported in a new species of water bear (Ramazzottiidae: Ramazzottius)
inferred← citeshttps://doi.org/10.6084/m9.figshare.26645539openalex-snapshot
Additional file 5 of Homology of the head sensory structures between Heterotardigrada and Eutardigrada supported in a new species of water bear (Ramazzottiidae: Ramazzottius)
inferred← citeshttps://doi.org/10.6084/m9.figshare.26645542openalex-snapshot
Additional file 6 of Homology of the head sensory structures between Heterotardigrada and Eutardigrada supported in a new species of water bear (Ramazzottiidae: Ramazzottius)
inferred← citeshttps://doi.org/10.6084/m9.figshare.26645545openalex-snapshot
Additional file 7 of Homology of the head sensory structures between Heterotardigrada and Eutardigrada supported in a new species of water bear (Ramazzottiidae: Ramazzottius)
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