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Heuristics, optimizations, and parallelism for protein structure prediction in CLP( FD )
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/(sici)1097-0134(1999)37:3+<171::aid-prot21>3.0.co;2-zopenalex-snapshot
Ab initio protein structure prediction of CASP III targets using ROSETTA
inferredcites →https://doi.org/10.1002/jcc.540040211openalex-snapshot
CHARMM : A program for macromolecular energy, minimization, and dynamics calculations
inferredcites →https://doi.org/10.1002/pro.5560061003openalex-snapshot
Ideal architecture of residue packing and its observation in protein structures
inferredcites →https://doi.org/10.1006/jmbi.1993.1413openalex-snapshot
Prediction of Protein Secondary Structure at Better than 70% Accuracy
inferredcites →https://doi.org/10.1006/jmbi.1996.0114openalex-snapshot
Residue – Residue Potentials with a Favorable Contact Pair Term and an Unfavorable High Packing Density Term, for Simulation and Threading
inferredcites →https://doi.org/10.1007/3-540-45578-7_34openalex-snapshot
Fast, Constraint-Based Threading of HP-Sequences to Hydrophobic Cores
inferredcites →https://doi.org/10.1007/978-3-540-24599-5_5openalex-snapshot
A Constraint-Based Approach to Structure Prediction for Simplified Protein Models That Outperforms Other Existing Methods
inferredcites →https://doi.org/10.1007/978-3-540-24662-6_14openalex-snapshot
Protein Folding in CLP(FD) with Empirical Contact Energies.
inferredcites →https://doi.org/10.1007/bfb0033845openalex-snapshot
An open-ended finite domain constraint solver
inferredcites →https://doi.org/10.1016/0041-2678(72)90107-8openalex-snapshot
National research council
inferredcites →https://doi.org/10.1016/j.polymer.2003.10.064openalex-snapshot
Reduced models of proteins and their applications
inferredcites →https://doi.org/10.1016/s0006-3495(96)79678-9openalex-snapshot
Modeling of polypeptide chains as C alpha chains, C alpha chains with C beta, and C alpha chains with ellipsoidal lateral chains
inferredcites →https://doi.org/10.1017/cbo9780511615320openalex-snapshot
Principles of Constraint Programming
inferredcites →https://doi.org/10.1021/jp961992ropenalex-snapshot
The GB/SA Continuum Model for Solvation. A Fast Analytical Method for the Calculation of Approximate Born Radii
inferredcites →https://doi.org/10.1023/a:1011485622743openalex-snapshot
The Protein Structure Prediction Problem: A Constraint Optimization Approach using a New Lower Bound
inferredcites →https://doi.org/10.1089/cmb.1996.3.53openalex-snapshot
Fast Protein Folding in the Hydrophobic–Hydrophilic Model within Three-Eighths of Optimal
inferredcites →https://doi.org/10.1089/cmb.1998.5.423openalex-snapshot
On the Complexity of Protein Folding
inferredcites →https://doi.org/10.1093/bib/2.2.204openalex-snapshot
Computational Molecular Biology: An Introduction
inferredcites →https://doi.org/10.1093/protein/4.7.751openalex-snapshot
Protein topology prediction through constraint-based search and the evaluation of topological folding rules
inferredcites →https://doi.org/10.1109/mcise.2001.947107openalex-snapshot
Computational studies of protein folding
inferredcites →https://doi.org/10.1110/ps.8.1.196openalex-snapshot
Folding simulation of protein models on the structure‐based cubo‐octahedral lattice with the Contact Interactions algorithm
inferredcites →https://doi.org/10.1145/267521.267522openalex-snapshot
Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model
inferredcites →https://doi.org/10.1145/276698.276875openalex-snapshot
On the complexity of protein folding (extended abstract)
inferredcites →https://doi.org/10.1145/504083.504085openalex-snapshot
Parallel execution of prolog programs
inferredcites →https://doi.org/10.1146/annurev.biophys.30.1.173openalex-snapshot
Ab Initio Protein Structure Prediction: Progress and Prospects
inferredcites →https://doi.org/10.1186/1471-2105-4-8openalex-snapshot
Amino acid empirical contact energy definitions for fold recognition in the space of contact maps
inferredcites →https://doi.org/10.1186/1471-2105-5-186openalex-snapshot
Constraint Logic Programming approach to protein structure prediction
inferredcites →https://doi.org/10.5555/545381.545495openalex-snapshot
A new algorithm for protein folding in the HP model
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/spe.810openalex-snapshot
A constraint solver for discrete lattices, its parallelization, and application to protein structure prediction
inferred← citeshttps://doi.org/10.1007/11591191_5openalex-snapshot
A New Constraint Solver for 3D Lattices and Its Application to the Protein Folding Problem
inferred← citeshttps://doi.org/10.1007/11750734_14openalex-snapshot
Specification and Verification of Agent Interaction Using Abductive Reasoning
inferred← citeshttps://doi.org/10.1007/978-3-031-34622-4_61openalex-snapshot
Protein Folding Optimization Using Butterfly Optimization Algorithm
inferred← citeshttps://doi.org/10.1007/978-3-319-03680-9_5openalex-snapshot
Neighborhood Selection in Constraint-Based Local Search for Protein Structure Prediction
inferred← citeshttps://doi.org/10.1007/978-3-319-13560-1_27openalex-snapshot
Constraint-Based Evolutionary Local Search for Protein Structures with Secondary Motifs
inferred← citeshttps://doi.org/10.1007/978-3-540-89982-2_69openalex-snapshot
Compiling and Executing Declarative Modeling Languages to Gecode
inferred← citeshttps://doi.org/10.1007/978-3-642-04238-6_58openalex-snapshot
Logic Programming Techniques in Protein Structure Determination: Methodologies and Results
inferred← citeshttps://doi.org/10.1007/978-3-642-14309-0_14openalex-snapshot
25 Years of Applications of Logic Programming in Italy
inferred← citeshttps://doi.org/10.1007/978-981-13-1951-8_53openalex-snapshot
RNA Structure Prediction Using Chemical Reaction Optimization
inferred← citeshttps://doi.org/10.1007/s00521-019-04447-8openalex-snapshot
Optimization of protein folding using chemical reaction optimization in HP cubic lattice model
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2016.01.008openalex-snapshot
Guided macro-mutation in a graded energy based genetic algorithm for protein structure prediction
inferred← citeshttps://doi.org/10.1098/rsos.150238openalex-snapshot
Efficient conformational space exploration inab initioprotein folding simulation
inferred← citeshttps://doi.org/10.1155/2013/924137openalex-snapshot
Mixing Energy Models in Genetic Algorithms for On-Lattice Protein Structure Prediction
inferred← citeshttps://doi.org/10.1155/2014/985968openalex-snapshot
A Parallel Framework for Multipoint Spiral Search in ab Initio Protein Structure Prediction
inferred← citeshttps://doi.org/10.1186/1471-2105-11-s1-s39openalex-snapshot
A hybrid approach to protein folding problem integrating constraint programming with local search
inferred← citeshttps://doi.org/10.1609/aaai.v27i1.8602openalex-snapshot
Mixed Heuristic Local Search for Protein Structure Prediction
inferred← citeshttps://doi.org/10.3233/ia-2011-0013openalex-snapshot
Recent constraint/logic programming based advances in the solution of the protein folding problem
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