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Fast Nonnegative Deconvolution for Spike Train Inference From Population Calcium Imaging
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Outgoing claims: the papers this work cites, builds on, or argues with.
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inferred← citeshttps://doi.org/10.1038/s41467-018-04349-8openalex-snapshot
Asynchronous suppression of visual cortex during absence seizures in stargazer mice
inferred← citeshttps://doi.org/10.1038/s41467-019-12974-0openalex-snapshot
Using slow frame rate imaging to extract fast receptive fields
inferred← citeshttps://doi.org/10.1038/s41467-020-17005-xopenalex-snapshot
Dynamic perceptual feature selectivity in primary somatosensory cortex upon reversal learning
inferred← citeshttps://doi.org/10.1038/s41467-020-18432-6openalex-snapshot
Hippocampal hub neurons maintain distinct connectivity throughout their lifetime
inferred← citeshttps://doi.org/10.1038/s41467-022-31578-9openalex-snapshot
Pattern decorrelation in the mouse medial prefrontal cortex enables social preference and requires MeCP2
inferred← citeshttps://doi.org/10.1038/s41467-024-53232-2openalex-snapshot
Deep-prior ODEs augment fluorescence imaging with chemical sensors
inferred← citeshttps://doi.org/10.1038/s41467-024-53690-8openalex-snapshot
Temporal dynamics of nucleus accumbens neurons in male mice during reward seeking
inferred← citeshttps://doi.org/10.1038/s41467-024-54320-zopenalex-snapshot
Early and late place cells during postnatal development of the hippocampus
inferred← citeshttps://doi.org/10.1038/s41467-025-60835-wopenalex-snapshot
Thalamocortical feedback selectively controls pyramidal neuron excitability
inferred← citeshttps://doi.org/10.1038/s41467-026-73999-wopenalex-snapshot
Independence and coherence in temporal sequence computation across the fronto-parietal network
inferred← citeshttps://doi.org/10.1038/s41583-022-00634-0openalex-snapshot
Multiregion neuronal activity: the forest and the trees
inferred← citeshttps://doi.org/10.1038/s41586-020-2130-2openalex-snapshot
Fundamental bounds on the fidelity of sensory cortical coding
inferred← citeshttps://doi.org/10.1038/s41586-021-03452-zopenalex-snapshot
Mouse prefrontal cortex represents learned rules for categorization
inferred← citeshttps://doi.org/10.1038/s41586-022-05014-3openalex-snapshot
Cortical feedback loops bind distributed representations of working memory
inferred← citeshttps://doi.org/10.1038/s41586-023-05828-9openalex-snapshot
Fast and sensitive GCaMP calcium indicators for imaging neural populations
inferred← citeshttps://doi.org/10.1038/s41592-019-0493-9openalex-snapshot
Kilohertz frame-rate two-photon tomography
inferred← citeshttps://doi.org/10.1038/s41592-022-01742-6openalex-snapshot
A modular architecture for organizing, processing and sharing neurophysiology data
inferred← citeshttps://doi.org/10.1038/s41592-026-03125-7openalex-snapshot
Simultaneous two- and three-photon multiplane imaging across cortical layers in freely moving mice
inferred← citeshttps://doi.org/10.1038/s41593-019-0559-0openalex-snapshot
Breakdown of spatial coding and interneuron synchronization in epileptic mice
inferred← citeshttps://doi.org/10.1038/s41593-020-00780-7openalex-snapshot
Phagocyte-mediated synapse removal in cortical neuroinflammation is promoted by local calcium accumulation
inferred← citeshttps://doi.org/10.1038/s41593-020-0677-8openalex-snapshot
Active dendritic currents gate descending cortical outputs in perception
inferred← citeshttps://doi.org/10.1038/s41593-021-00809-5openalex-snapshot
Synaptic plasticity as Bayesian inference
inferred← citeshttps://doi.org/10.1038/s41593-021-00845-1openalex-snapshot
Correlations enhance the behavioral readout of neural population activity in association cortex
inferred← citeshttps://doi.org/10.1038/s41593-021-00895-5openalex-snapshot
A database and deep learning toolbox for noise-optimized, generalized spike inference from calcium imaging
inferred← citeshttps://doi.org/10.1038/s41593-021-00914-5openalex-snapshot
Mouse visual cortex areas represent perceptual and semantic features of learned visual categories
inferred← citeshttps://doi.org/10.1038/s41593-022-01189-0openalex-snapshot
A deep learning framework for inference of single-trial neural population dynamics from calcium imaging with subframe temporal resolution
inferred← citeshttps://doi.org/10.1038/s41593-022-01250-yopenalex-snapshot
A sleep-active basalocortical pathway crucial for generation and maintenance of chronic pain
inferred← citeshttps://doi.org/10.1038/s41593-025-01982-7openalex-snapshot
Homeostasis of a representational map in the neocortex
inferred← citeshttps://doi.org/10.1038/s41598-020-74672-yopenalex-snapshot
Improved hyperacuity estimation of spike timing from calcium imaging
inferred← citeshttps://doi.org/10.1038/s41598-024-55608-2openalex-snapshot
Automatic monitoring of neural activity with single-cell resolution in behaving Hydra
inferred← citeshttps://doi.org/10.1038/s42003-019-0602-4openalex-snapshot
Differential cell-type dependent brain state modulations of sensory representations in the non-lemniscal mouse inferior colliculus
inferred← citeshttps://doi.org/10.1038/s42003-020-0788-5openalex-snapshot
Spectral hallmark of auditory-tactile interactions in the mouse somatosensory cortex
inferred← citeshttps://doi.org/10.1038/s42003-022-04268-xopenalex-snapshot
Reduced excitatory neuron activity and interneuron-type-specific deficits in a mouse model of Alzheimer’s disease
inferred← citeshttps://doi.org/10.1038/s43588-022-00390-2openalex-snapshot
Dimensionality reduction of calcium-imaged neuronal population activity
inferred← citeshttps://doi.org/10.1038/srep04784openalex-snapshot
NeuroArray: A Universal Interface for Patterning and Interrogating Neural Circuitry with Single Cell Resolution
inferred← citeshttps://doi.org/10.1038/srep12597openalex-snapshot
Neuronal Representation of Ultraviolet Visual Stimuli in Mouse Primary Visual Cortex
inferred← citeshttps://doi.org/10.1039/c5lc00180copenalex-snapshot
Differentiation of neuroepithelial stem cells into functional dopaminergic neurons in 3D microfluidic cell culture
inferred← citeshttps://doi.org/10.1039/c7ja00334jopenalex-snapshot
A numerical inversion method for improving the spatial resolution of elemental imaging by laser ablation-inductively coupled plasma-mass spectrometry
inferred← citeshttps://doi.org/10.1073/pnas.1406077111openalex-snapshot
Visual stimuli recruit intrinsically generated cortical ensembles
inferred← citeshttps://doi.org/10.1073/pnas.1520759113openalex-snapshot
Astrocytes regulate cortical state switching in vivo
inferred← citeshttps://doi.org/10.1073/pnas.1615330113openalex-snapshot
Jointly reduced inhibition and excitation underlies circuit-wide changes in cortical processing in Rett syndrome
inferred← citeshttps://doi.org/10.1073/pnas.1812995116openalex-snapshot
Fast and robust active neuron segmentation in two-photon calcium imaging using spatiotemporal deep learning
inferred← citeshttps://doi.org/10.1073/pnas.2206067119openalex-snapshot
Prospective and retrospective values integrated in frontal cortex drive predictive choice
inferred← citeshttps://doi.org/10.1080/01677063.2016.1180384openalex-snapshot
Imaging voltage in zebrafish as a route to characterizing a vertebrate functional connectome: promises and pitfalls of genetically encoded indicators
inferred← citeshttps://doi.org/10.1080/26941899.2024.2407770openalex-snapshot
Time-Varying ℓ 0 Optimization for Spike Inference from Multi-Trial Calcium Recordings
inferred← citeshttps://doi.org/10.1088/0034-4885/74/8/086602openalex-snapshot
Two-photon imaging and analysis of neural network dynamics
inferred← citeshttps://doi.org/10.1088/1741-2552/aba07dopenalex-snapshot
Scalable surrogate deconvolution for identification of partially-observable systems and brain modeling
inferred← citeshttps://doi.org/10.1088/1741-2552/ac02ddopenalex-snapshot
Toward living neuroprosthetics: developing a biological brain pacemaker as a living neuromodulatory implant for improving parkinsonian symptoms
inferred← citeshttps://doi.org/10.1088/1741-2552/ad6cf4openalex-snapshot
Robust entropy rate estimation for nonstationary neuronal calcium spike trains based on empirical probabilities
inferred← citeshttps://doi.org/10.1088/1741-2560/10/4/046017openalex-snapshot
A finite rate of innovation algorithm for fast and accurate spike detection from two-photon calcium imaging
inferred← citeshttps://doi.org/10.1089/neu.2017.5029openalex-snapshot
Mild Blast Injury Produces Acute Changes in Basal Intracellular Calcium Levels and Activity Patterns in Mouse Hippocampal Neurons
inferred← citeshttps://doi.org/10.1093/bib/bbaa355openalex-snapshot
Deep learning approaches for neural decoding across architectures and recording modalities
inferred← citeshttps://doi.org/10.1093/biostatistics/kxab034openalex-snapshot
Quantifying uncertainty in spikes estimated from calcium imaging data
inferred← citeshttps://doi.org/10.1093/biostatistics/kxy083openalex-snapshot
Fast nonconvex deconvolution of calcium imaging data
inferred← citeshttps://doi.org/10.1093/cercor/bhab084openalex-snapshot
A Distinct Population of L6 Neurons in Mouse V1 Mediate Cross-Callosal Communication
inferred← citeshttps://doi.org/10.1093/cercor/bhac445openalex-snapshot
A stable sensory map emerges from a dynamic equilibrium of neurons with unstable tuning properties
inferred← citeshttps://doi.org/10.1093/cercor/bhx169openalex-snapshot
Parvalbumin-Positive Interneurons Regulate Neuronal Ensembles in Visual Cortex
inferred← citeshttps://doi.org/10.1093/med/9780197549469.003.0042openalex-snapshot
Functional Exploration of Epilepsy Genes in Patient-Derived Cells
inferred← citeshttps://doi.org/10.1101/010777openalex-snapshot
Supervised learning sets benchmark for robust spike rate inference from calcium imaging signals
inferred← citeshttps://doi.org/10.1101/011320openalex-snapshot
Wide field-of-view, multi-region two-photon imaging of neuronal activity in vivo
inferred← citeshttps://doi.org/10.1101/054080openalex-snapshot
PackIO and EphysViewer: software tools for acquisition and analysis of neuroscience data
inferred← citeshttps://doi.org/10.1101/061507openalex-snapshot
Suite2p: beyond 10,000 neurons with standard two-photon microscopy
inferred← citeshttps://doi.org/10.1101/132688openalex-snapshot
Identification of cellular-activity dynamics across large tissue volumes in the mammalian brain
inferred← citeshttps://doi.org/10.1101/156364openalex-snapshot
Blind sparse deconvolution for inferring spike trains from fluorescence recordings
inferred← citeshttps://doi.org/10.1101/156786openalex-snapshot
Robustness of spike deconvolution for calcium imaging of neural spiking
inferred← citeshttps://doi.org/10.1101/193383openalex-snapshot
OnACID: Online Analysis of Calcium Imaging Data in Real Time*
inferred← citeshttps://doi.org/10.1101/2020.03.25.007468openalex-snapshot
EASE: EM-Assisted Source Extraction from calcium imaging data
inferred← citeshttps://doi.org/10.1101/2020.04.16.044941openalex-snapshot
Functional MRI of large scale activity in behaving mice
inferred← citeshttps://doi.org/10.1101/2020.08.31.272450openalex-snapshot
Database and deep learning toolbox for noise-optimized, generalized spike inference from calcium imaging
inferred← citeshttps://doi.org/10.1101/2020.12.07.415109openalex-snapshot
Selective increase of functional network connectivity in Arc-positive neuronal engrams after long-term potentiation
inferred← citeshttps://doi.org/10.1101/2021.04.15.440055openalex-snapshot
Behavioral clusters revealed by end-to-end decoding from microendoscopic imaging
inferred← citeshttps://doi.org/10.1101/2021.06.23.449591openalex-snapshot
Neuronal hyperactivity in a LRRK2-G2019S cellular model of Parkinson’s Disease
inferred← citeshttps://doi.org/10.1101/2021.11.16.468594openalex-snapshot
Multi-ensemble coordination between the direct and indirect striatal pathways actuates perceptual decisions
inferred← citeshttps://doi.org/10.1101/2021.12.27.474215openalex-snapshot
From Retrospective to Prospective: Integrated Value Representation in Frontal Cortex for Predictive Choice Behavior
inferred← citeshttps://doi.org/10.1101/2022.01.11.475549openalex-snapshot
NNeurite: artificial neuronal networks for the unsupervised extraction of axonal and dendritic time-lapse signals
inferred← citeshttps://doi.org/10.1101/2022.01.20.477039openalex-snapshot
Astrocyte glutamate transport is modulated by motor learning and regulates neuronal correlations and movement encoding by motor cortex neurons
inferred← citeshttps://doi.org/10.1101/2022.04.05.487201openalex-snapshot
High frequency spike inference with particle Gibbs sampling
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