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DNA Barcoding on Bacteria: A Review

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Outgoing claims: the papers this work cites, builds on, or argues with.

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A Convenient Preparation of Multi‐Spectral Microparticles by Bacteria‐Mediated Assemblies of Conjugated Polymer Nanoparticles for Cell Imaging and Barcoding
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Metallic Striped Nanowires as Multiplexed Immunoassay Platforms for Pathogen Detection
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Current state and perspectives of fungal DNA barcoding and rapid identification procedures
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The microarthropods of sub-Antarctic Prince Edward Island: a quantitative assessment
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DNA barcoding as a tool for coral reef conservation
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Nanobioimaging and sensing of infectious diseases
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Fluorescent bio-barcode DNA assay for the detection of Salmonella enterica serovar Enteritidis
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DNA barcoding as a new tool for food traceability
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Amplification facilitators and multiplex PCR: Tools to overcome PCR-inhibition in DNA-gut-content analysis of soil-living invertebrates
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DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics
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Molecular taxonomics for biodiversity surveys: already a reality
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Optical Detection of DNA and Proteins with Cationic Polythiophenes
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Cationic Conjugated Polymers for Optical Detection of DNA Methylation, Lesions, and Single Nucleotide Polymorphisms
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Chemical Sensors Based on Amplifying Fluorescent Conjugated Polymers
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Fluorescent DNA Nanotags Based on a Self-Assembled DNA Tetrahedron
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Counting angels with DNA
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Cowrie study strikes a blow for traditional taxonomy
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Quantum-dot-tagged microbeads for multiplexed optical coding of biomolecules
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Identification of Yersinia enterocolitica genes affecting survival in an animal host using signature‐tagged transposon mutagenesis
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Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM
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Microbial diversity in the deep sea and the underexplored “rare biosphere”
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Estimating prokaryotic diversity and its limits
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Discovery of virulence genes of Legionella pneumophila by using signature tagged mutagenesis in a guinea pig pneumonia model
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The Perils of DNA Barcoding and the Need for Integrative Taxonomy
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The Promise of DNA Barcoding for Taxonomy
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DNA Barcoding Will Often Fail to Discover New Animal Species over Broad Parameter Space
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Wolbachia(Rickettsiales) infections and bee (Apoidea) barcoding: a response to Gerthet al.
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A multilocus sequence typing (MLST) approach to diminish the problems that are associated with DNA barcoding: A reply to Stahlhutet al. (2012)
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A Genomic Perspective on the Shortcomings of Mitochondrial DNA for “Barcoding” Identification
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In vivo generation of DNA sequence diversity for cellular barcoding
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Barcoding Bamboozled by Bacteria: Convergence to Metazoan Mitochondrial Primer Targets by Marine Microbes
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The Effect of Geographical Scale of Sampling on DNA Barcoding
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Biological identifications through DNA barcodes
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The promise of a DNA taxonomy
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Towards writing the encyclopaedia of life: an introduction to DNA barcoding
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DNA barcoding a regional fauna: Irish solitary bees
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QBOL: a new EU project focusing on DNA barcoding of Quarantine organisms
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Revealing species‐specific trophic links in soil food webs: molecular identification of scarab predators
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Multi‐locus species delimitation in closely related animals and fungi: one marker is not enough
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Phylogenetic congruence between Mollitrichosiphum (Aphididae: Greenideinae) and Buchnera indicates insect–bacteria parallel evolution
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Microbial population genomics and ecology: the road ahead
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bold : The Barcode of Life Data System (http://www.barcodinglife.org)
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Utility of Mitochondrial DNA Barcodes in Species Conservation
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Us or Them
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Integration of DNA barcoding into an ongoing inventory of complex tropical biodiversity
inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02645.xopenalex-snapshot
DNA barcoding a regional bee (Hymenoptera: Apoidea) fauna and its potential for ecological studies
inferredcites →https://doi.org/10.1111/j.1755-0998.2012.03119.xopenalex-snapshot
An emergent science on the brink of irrelevance: a review of the past 8 years of DNA barcoding
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Phylogenetic clustering increases with elevation for microbes
inferredcites →https://doi.org/10.1126/science.1093857openalex-snapshot
Environmental Genome Shotgun Sequencing of the Sargasso Sea
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Comparative Metagenomics of Microbial Communities
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Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior
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A Molecular View of Microbial Diversity and the Biosphere
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Simultaneous Identification of Bacterial Virulence Genes by Negative Selection
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Multilocus Sequence Typing System for the Endosymbiont Wolbachia pipientis
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Identification of Attenuated Yersinia pseudotuberculosis Strains and Characterization of an Orogastric Infection in BALB/c Mice on Day 5 Postinfection by Signature-Tagged Mutagenesis
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Genome Sequence of Lactobacillus helveticus , an Organism Distinguished by Selective Gene Loss and Insertion Sequence Element Expansion
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Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity
inferredcites →https://doi.org/10.1139/x05-276openalex-snapshot
DNA barcodes for insect pest identification: a test case with tussock moths (Lepidoptera: Lymantriidae)
inferredcites →https://doi.org/10.1146/annurev.ecolsys.33.010802.150448openalex-snapshot
Phylogenies and Community Ecology
inferredcites →https://doi.org/10.1186/1471-2164-10-s3-s8openalex-snapshot
BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources
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Mobilisation and remobilisation of a large archetypal pathogenicity island of uropathogenic Escherichia coli in vitrosupport the role of conjugation for horizontal transfer of genomic islands
inferredcites →https://doi.org/10.1186/1471-2180-9-50openalex-snapshot
Comparative genomics of lactic acid bacteria reveals a niche-specific gene set
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Pyrosequencing, a method approved to detect the two major EGFR mutations for anti EGFR therapy in NSCLC
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A novel molecular typing method of Mycobacteria based on DNA barcoding visualization
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Bar-Coded Enterobacteria: An Undergraduate Microbial Ecology Laboratory Module
inferredcites →https://doi.org/10.1371/journal.pone.0018496openalex-snapshot
Classification of Plant Associated Bacteria Using RIF, a Computationally Derived DNA Marker
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The Chaperonin-60 Universal Target Is a Barcode for Bacteria That Enables De Novo Assembly of Metagenomic Sequence Data
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DNA Barcoding for Identification of ‘Candidatus Phytoplasmas’ Using a Fragment of the Elongation Factor Tu Gene
inferredcites →https://doi.org/10.1371/journal.pone.0076910openalex-snapshot
Two New Computational Methods for Universal DNA Barcoding: A Benchmark Using Barcode Sequences of Bacteria, Archaea, Animals, Fungi, and Land Plants
inferredcites →https://doi.org/10.1590/s1676-06032010000200035openalex-snapshot
DNA barcoding and traditional taxonomy unified through Integrative Taxonomy: a view that challenges the debate questioning both methodologies
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Anting behavior by the White-bearded Manakin (Manacus manacus, Pipridae): an example of functional interaction in a frugivorous lekking bird
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Endosymbiosis of Animals with Plant Microorganisms
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DNA barcoding a highly diverse group of parasitoid wasps (Braconidae: Doryctinae) from a Mexican nature reserve
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Global phylogenetic community structure and β-diversity patterns in surface bacterioplankton metacommunities
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Predicting a novel pathogenicity island inHelicobacter pyloriby genomic barcoding

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Uncovering the hidden biodiversity of natural history collections: Insights from DNA barcoding and morphological characters of the Neotropical genus Orthocomotis Dognin (Lepidoptera: Tortricidae)
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