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Phylogeny and Comparative Analysis for the Plastid Genomes of Five Tulipa (Liliaceae)

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Outgoing claims: the papers this work cites, builds on, or argues with.

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A pre‐Miocene Irano‐Turanian cradle: Origin and diversification of the species‐rich monocot genus Gagea (Liliaceae)
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Liliaceae
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Interspecific crosses between Tulipa gesneriana cultivars and wild Tulipa species: a survey
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Selection on the codon bias of chloroplast and cyanelle genes in different plant and algal lineages
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Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
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Interspecific crosses in the genus Tulipa L.: identification of pre-fertilization barriers
inferredcites →https://doi.org/10.1007/s00606-009-0203-7openalex-snapshot
The systematic value of nuclear genome size for “all” species of Tulipa L. (Liliaceae)
inferredcites →https://doi.org/10.1007/s10681-007-9539-7openalex-snapshot
Analysis of introgression of the Tulipa fosteriana genome into Tulipa gesneriana using GISH and FISH
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The evolution of the plastid chromosome in land plants: gene content, gene order, gene function
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The complete chloroplast genome of Lilium cernuum: genome structure and evolution
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Biodiversity status of Tulipa (Liliaceae) in Iran inferred from molecular characterization
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Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences
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A Comparative Analysis of the Chloroplast Genomes of Four Salvia Medicinal Plants
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TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data
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Molecular phylogenetic evidence for the monophyly of Fritillaria and Lilium (Liliaceae; Liliales) and the infrageneric classification of Fritillaria
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Implications of plastome evolution in the true lilies (monocot order Liliales)
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Tulipaline and tuliposide in cultured explants of tulip bulb scales
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Methods for Obtaining and Analyzing Whole Chloroplast Genome Sequences
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Phylogeny and Biogeography of Erythronium (Liliaceae) Inferred from Chloroplast matK and Nuclear rDNA ITS Sequences
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Molecular systematics of Lilium and allied genera (Liliaceae): phylogenetic relationships among Lilium and related genera based on the rbcL and matK gene sequence data
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Rates and patterns of chloroplast DNA evolution.
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Simple Sequence Repeat Markers in Genetic Divergence and Marker-Assisted Selection of Rice Cultivars: A Review
inferredcites →https://doi.org/10.1093/aob/mcp103openalex-snapshot
Molecular systematics of Gagea and Lloydia (Liliaceae; Liliales): implications of analyses of nuclear ribosomal and plastid DNA sequences for infrageneric classification
inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
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DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
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Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/bty220openalex-snapshot
IRscope: an online program to visualize the junction sites of chloroplast genomes
inferredcites →https://doi.org/10.1093/botlinnean/boy031openalex-snapshot
Updated molecular phylogenetic analysis, dating and biogeographical history of the lily family (Liliaceae: Liliales)
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Complete Chloroplast Genome Sequences from Korean Ginseng (Panax schinseng Nees) and Comparative Analysis of Sequence Evolution among 17 Vascular Plants
inferredcites →https://doi.org/10.1093/dnares/dsp025openalex-snapshot
The Chloroplast Genome Sequence of Mungbean (Vigna radiata) Determined by High-throughput Pyrosequencing: Structural Organization and Phylogenetic Relationships
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets
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NOVOPlasty: de novo assembly of organelle genomes from whole genome data
inferredcites →https://doi.org/10.1111/1755-0998.12251openalex-snapshot
Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs
inferredcites →https://doi.org/10.1111/boj.12040openalex-snapshot
Molecular phylogenetic analysis of Tulipa (Liliaceae) based on noncoding plastid and nuclear DNA sequences with an emphasis on Turkey
inferredcites →https://doi.org/10.1111/boj.12061openalex-snapshot
Tiptoe through the tulips - cultural history, molecular phylogenetics and classification ofTulipa(Liliaceae)
inferredcites →https://doi.org/10.1111/boj.12385openalex-snapshot
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
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Phylogeny of the Liliales (Monocotyledons) with special emphasis on data partition congruence and RNA editing
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Nuclear and chloroplast DNA phylogeography reveals vicariance among European populations of the model species for the study of metal tolerance,Arabidopsis halleri(Brassicaceae)
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Chloroplast simple sequence repeats (cpSSRs): technical resources and recommendations for expanding cpSSR discovery and applications to a wide array of plant species
inferredcites →https://doi.org/10.1111/nph.14926openalex-snapshot
Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes
inferredcites →https://doi.org/10.1139/g97-014openalex-snapshot
Chloroplast DNA variability in wild and cultivated rice (Oryzaspp.) revealed by polymorphic chloroplast simple sequence repeats
inferredcites →https://doi.org/10.11646/phytotaxa.177.2.3openalex-snapshot
Amana wanzhensis (Liliaceae), a new species from Anhui, China
inferredcites →https://doi.org/10.1186/1471-2148-8-36openalex-snapshot
Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots
inferredcites →https://doi.org/10.1186/1471-2164-8-174openalex-snapshot
Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus
inferredcites →https://doi.org/10.1186/1741-7007-7-84openalex-snapshot
Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
inferredcites →https://doi.org/10.1186/s12863-014-0138-zopenalex-snapshot
A chloroplast genomic strategy for designing taxon specific DNA mini-barcodes: a case study on ginsengs
inferredcites →https://doi.org/10.1186/s13007-019-0435-7openalex-snapshot
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes
inferredcites →https://doi.org/10.1186/s13059-016-1004-2openalex-snapshot
Chloroplast genomes: diversity, evolution, and applications in genetic engineering
inferredcites →https://doi.org/10.1371/journal.pone.0012762openalex-snapshot
The Complete Chloroplast Genome Sequence of Date Palm (Phoenix dactylifera L.)
inferredcites →https://doi.org/10.1371/journal.pone.0035071openalex-snapshot
Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding
inferredcites →https://doi.org/10.1371/journal.pone.0068180openalex-snapshot
Comparative Genome Analysis and Phylogenetic Relationship of Order Liliales Insight from the Complete Plastid Genome Sequences of Two Lilies (Lilium longiflorum and Alstroemeria aurea)
inferredcites →https://doi.org/10.2307/1219713openalex-snapshot
Tulips, Taxonomy, Morphology, Cytology, Phytogeography and Physiology
inferredcites →https://doi.org/10.2478/v10054-008-0029-1openalex-snapshot
Selection and presentation of tulip (Tulipa L.) species and cultivars to the Lithuanian Plant Genetic Resources
inferredcites →https://doi.org/10.3389/fpls.2016.00959openalex-snapshot
Comparative Analysis of the Complete Chloroplast Genomes of Five Quercus Species
inferredcites →https://doi.org/10.3389/fpls.2016.02054openalex-snapshot
The Complete Chloroplast Genomes of Three Cardiocrinum (Liliaceae) Species: Comparative Genomic and Phylogenetic Analyses
inferredcites →https://doi.org/10.3389/fpls.2017.00451openalex-snapshot
Comparative Genomics and Phylogenomics of East Asian Tulips (Amana, Liliaceae)
inferredcites →https://doi.org/10.3390/ijms19030709openalex-snapshot
The Complete Plastome Sequence of an Antarctic Bryophyte Sanionia uncinata (Hedw.) Loeske
inferredcites →https://doi.org/10.3390/ijms19071847openalex-snapshot
Comparative Analysis of the Chloroplast Genomes of the Chinese Endemic Genus Urophysa and Their Contribution to Chloroplast Phylogeny and Adaptive Evolution
inferredcites →https://doi.org/10.3390/molecules23051015openalex-snapshot
Comparative Analysis of the Complete Chloroplast Genomes of Four Aconitum Medicinal Species
inferredcites →https://doi.org/10.3390/molecules23061276openalex-snapshot
The Chloroplast Genome of Lilium henrici: Genome Structure and Comparative Analysis
inferredcites →https://doi.org/10.3390/plants9080965openalex-snapshot
Phylogeny and Comparative Analysis of Chinese Chamaesium Species Revealed by the Complete Plastid Genome
inferredcites →https://doi.org/10.3732/ajb.1000532openalex-snapshot
Chloroplast microsatellite markers in Liriodendron tulipifera (Magnoliaceae) and cross‐species amplification in L. chinense
inferredcites →https://doi.org/10.3732/apps.1400059openalex-snapshot
A review of the prevalence, utility, and caveats of using chloroplast simple sequence repeats for studies of plant biology
inferredcites →https://doi.org/10.7717/peerj.2699openalex-snapshot
Comparative analysis of the complete chloroplast genome sequences in psammophytic Haloxylon species (Amaranthaceae)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/phytokeys.250.136736zenodo-depositor-declared
Revisiting the genus Tulipa (Liliaceae) in Kazakhstan, the country with the richest tulip diversity worldwide
inferred← citeshttps://doi.org/10.3897/phytokeys.251.133890zenodo-depositor-declared
Morphometric parameters of seeds as a practical method for identifying rare species of the genus Tulipa L. (Liliaceae) from East Kazakhstan region
inferred← citeshttps://doi.org/10.5281/zenodo.14548291zenodo-depositor-declared
Tulipa iliensis Regel
inferred← citeshttps://doi.org/10.5281/zenodo.14548319zenodo-depositor-declared
Tulipa patens C. Agardh
inferred← citeshttps://doi.org/10.1007/s00606-024-01907-0openalex-snapshot
Phylogeny and infrageneric classification of tulips
inferred← citeshttps://doi.org/10.1007/s10722-023-01674-wopenalex-snapshot
Revealing genetic diversity of tulips in Turkey with inter-simple sequence repeat markers
inferred← citeshttps://doi.org/10.1080/13102818.2024.2337694openalex-snapshot
Taxonomic and molecular characterization of 15 wild-growing tulip species of Greece using the internal transcribed spacer (ITS) nuclear marker in combination with the psb A- trn H and trn L/ trn F plastid markers
inferred← citeshttps://doi.org/10.1080/23802359.2022.2093676openalex-snapshot
The complete chloroplast genome of Tulipa gesneriana (Liliaceae) and its phylogenetic analysis
inferred← citeshttps://doi.org/10.1080/23802359.2025.2468748openalex-snapshot
The complete chloroplast genome of Tulipa uniflora (Liliaceae) in Mongolia
inferred← citeshttps://doi.org/10.1111/njb.04460openalex-snapshot
Comparative chloroplast genome and phylogenetic analysis of Central Asian tulips
inferred← citeshttps://doi.org/10.1186/s12870-024-05892-xopenalex-snapshot
Comparative chloroplast genome analysis of Ardisia (Myrsinoideae, Primulaceae) in China and implications for phylogenetic relationships and adaptive evolution
inferred← citeshttps://doi.org/10.3389/fgene.2022.925726openalex-snapshot
Chloroplast Genomes of Genus Tilia: Comparative Genomics and Molecular Evolution
inferred← citeshttps://doi.org/10.3389/fpls.2024.1433253openalex-snapshot
Kazakhstan tulips: comparative analysis of complete chloroplast genomes of four local and endangered species of the genus Tulipa L.
inferred← citeshttps://doi.org/10.3390/agronomy11091709openalex-snapshot
Breeding Aspects of Selected Ornamental Bulbous Crops
inferred← citeshttps://doi.org/10.3390/d14090776openalex-snapshot
Plastomes Provide Insights into Differences between Morphology and Molecular Phylogeny: Ostericum and Angelica (Apiaceae) as an Example
inferred← citeshttps://doi.org/10.3390/d17030219openalex-snapshot
Clarifying the Taxonomic Relationships of Tulipa iliensis and T. thianschanica Based on Multiple Evidences of Phenotypic, Karyotype, Molecular, and Chloroplast Genomes
inferred← citeshttps://doi.org/10.3390/genes13071279openalex-snapshot
Comparative Analysis of the Complete Chloroplast Genomes in Allium Section Bromatorrhiza Species (Amaryllidaceae): Phylogenetic Relationship and Adaptive Evolution
inferred← citeshttps://doi.org/10.3390/genes15111447openalex-snapshot
Assessment of Complete Plastid Genome Sequences of Tulipa alberti Regel and Tulipa greigii Regel Species from Kazakhstan
inferred← citeshttps://doi.org/10.3390/ijms25147874openalex-snapshot
Comparative Analysis of Plastome Sequences of Seven Tulipa L. (Liliaceae Juss.) Species from Section Kolpakowskianae Raamsd. Ex Zonn and Veldk.
inferred← citeshttps://doi.org/10.3390/plants11233275openalex-snapshot
Evidence from Phylogenomics and Morphology Provide Insights into the Phylogeny, Plastome Evolution, and Taxonomy of Kitagawia
inferred← citeshttps://doi.org/10.3390/plants13182667openalex-snapshot
Genetic Diversity of Tulipa alberti and T. greigii Populations from Kazakhstan Based on Application of Expressed Sequence Tag Simple Sequence Repeat Markers
inferred← citeshttps://doi.org/10.3390/plants15121817openalex-snapshot
Morphology, Taxonomy, Geographic Distribution, Genetic Diversity, and Phylogenomics of the Genus Tulipa L.: A Comprehensive Review
inferred← citeshttps://doi.org/10.53471/bahce.1548127openalex-snapshot
The Effects of Compound Fertilizers Application to Different Commercial Tulip Varieties in Natural Growing Area on Plant and Bulb Growth
inferred← citeshttps://doi.org/10.7124/visnyk.utgis.20.1-2.1508openalex-snapshot
The use of the intergenic spacer region psbA-trnH of the chloroplast genome for the analysis of the taxonomic position and genetic polymorphism of the Ukrainian populations of Tulipa quercetorum Klokov et Zoz
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