On the public citation graph

Stochastic Modelling for Systems Biology

0 signed · 298 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4690900openalex-extracted
inferred← citeshttps://doi.org/10.1002/9781119078845.ch27openalex-snapshot
Biological Network Inference at Multiple Scales: From Gene Regulation to Species Interactions
inferred← citeshttps://doi.org/10.1002/9781119483946.refsopenalex-snapshot
References
inferred← citeshttps://doi.org/10.1002/aic.14409openalex-snapshot
Comparison of parameter estimation methods in stochastic chemical kinetic models: Examples in systems biology
inferred← citeshttps://doi.org/10.1002/art.38297openalex-snapshot
A Computer Simulation Approach to Assessing Therapeutic Intervention Points for the Prevention of Cytokine‐Induced Cartilage Breakdown
inferred← citeshttps://doi.org/10.1002/bimj.201700060openalex-snapshot
A cautionary note on Bayesian estimation of population size by removal sampling with diffuse priors
inferred← citeshttps://doi.org/10.1002/ece3.11637openalex-snapshot
Accounting for effects of growth rate when measuring ecological stability in response to pulse perturbations
inferred← citeshttps://doi.org/10.1002/ece3.6926openalex-snapshot
gauseR: Simple methods for fitting Lotka‐Volterra models describing Gause’s “Struggle for Existence”
inferred← citeshttps://doi.org/10.1002/ecs2.4328openalex-snapshot
Measuring stability in ecological systems without static equilibria
inferred← citeshttps://doi.org/10.1002/mma.6631openalex-snapshot
Synthetic likelihood method for reaction network inference
inferred← citeshttps://doi.org/10.1002/wics.1534openalex-snapshot
Differential equations in data analysis
inferred← citeshttps://doi.org/10.1007/978-1-0716-3008-2_10openalex-snapshot
Modeling Cellular Signaling Variability Based on Single-Cell Data: The TGFβ-SMAD Signaling Pathway
inferred← citeshttps://doi.org/10.1007/978-1-4939-8882-2_3openalex-snapshot
Overview and Evaluation of Recent Methods for Statistical Inference of Gene Regulatory Networks from Time Series Data
inferred← citeshttps://doi.org/10.1007/978-1-62703-450-0_9openalex-snapshot
Simulation of Stochastic Kinetic Models
inferred← citeshttps://doi.org/10.1007/978-3-030-17297-8_3openalex-snapshot
Statistical Model Checking-Based Analysis of Biological Networks
inferred← citeshttps://doi.org/10.1007/978-3-030-32622-7_30openalex-snapshot
Validation of Modeling and Simulation Methods in Computational Biology
inferred← citeshttps://doi.org/10.1007/978-3-030-41255-5_2openalex-snapshot
Dynamic Models
inferred← citeshttps://doi.org/10.1007/978-3-030-80205-9_3openalex-snapshot
Modeling as an Environment Nurturing Knowledge Transfer
inferred← citeshttps://doi.org/10.1007/978-3-030-84122-5_18openalex-snapshot
On the Approximation of Extinction Time for the Discrete-Time Birth–Death Circuit Chains in Random Environments
inferred← citeshttps://doi.org/10.1007/978-3-031-43575-1_4openalex-snapshot
Continuous-Time Markov Chains
inferred← citeshttps://doi.org/10.1007/978-3-031-74748-9_2openalex-snapshot
Dynamic Models
inferred← citeshttps://doi.org/10.1007/978-3-031-74748-9_3openalex-snapshot
Model Identifiability
inferred← citeshttps://doi.org/10.1007/978-3-319-11259-6_23-1openalex-snapshot
Sampling via Measure Transport: An Introduction
inferred← citeshttps://doi.org/10.1007/978-3-319-12385-1_23openalex-snapshot
Sampling via Measure Transport: An Introduction
inferred← citeshttps://doi.org/10.1007/978-3-319-21296-8_2openalex-snapshot
Reverse Engineering Under Uncertainty
inferred← citeshttps://doi.org/10.1007/978-3-319-39502-9_1openalex-snapshot
Probability
inferred← citeshttps://doi.org/10.1007/978-3-319-39502-9_4openalex-snapshot
Applications in Chemistry
inferred← citeshttps://doi.org/10.1007/978-3-319-39502-9_5openalex-snapshot
Applications in Biology
inferred← citeshttps://doi.org/10.1007/978-3-319-39994-2_8openalex-snapshot
Modelling Folate Metabolism and DNA Methylation
inferred← citeshttps://doi.org/10.1007/978-3-319-60240-0_23openalex-snapshot
Integrating Simulation and Signal Processing with Stochastic Social Kinetic Model
inferred← citeshttps://doi.org/10.1007/978-3-319-89524-6_4openalex-snapshot
Modeling in STEM
inferred← citeshttps://doi.org/10.1007/978-3-319-89929-9_4openalex-snapshot
Statistical Inference of Peroxisome Dynamics
inferred← citeshttps://doi.org/10.1007/978-3-642-40708-6_10openalex-snapshot
Statistical Model Checking Based Calibration and Analysis of Bio-pathway Models
inferred← citeshttps://doi.org/10.1007/978-981-96-7109-0_1openalex-snapshot
Stochastic Block Model Based on Variational Inference and Its Extensions: An Application to Examine Global Migration Dynamics
inferred← citeshttps://doi.org/10.1007/s00180-024-01594-yopenalex-snapshot
A novel method and comparison of methods for constructing Markov bridges
inferred← citeshttps://doi.org/10.1007/s00285-013-0685-3openalex-snapshot
Identification of alterations in the Jacobian of biochemical reaction networks from steady state covariance data at two conditions
inferred← citeshttps://doi.org/10.1007/s00285-020-01516-8openalex-snapshot
On real-valued SDE and nonnegative-valued SDE population models with demographic variability
inferred← citeshttps://doi.org/10.1007/s00285-021-01561-xopenalex-snapshot
Stochastic nonlinear model for somatic cell population dynamics during ovarian follicle activation
inferred← citeshttps://doi.org/10.1007/s00285-022-01859-4openalex-snapshot
Heteroclinic cycling and extinction in May–Leonard models with demographic stochasticity
inferred← citeshttps://doi.org/10.1007/s00422-025-01004-6openalex-snapshot
Efficient stochastic simulation of piecewise-deterministic Markov processes and its application to the Morris–Lecar model of neural dynamics
inferred← citeshttps://doi.org/10.1007/s00500-020-05530-2openalex-snapshot
Toward endosymbiosis modeling using reaction networks
inferred← citeshttps://doi.org/10.1007/s10009-014-0343-0openalex-snapshot
Statistical model checking for biological applications
inferred← citeshttps://doi.org/10.1007/s10439-021-02854-4openalex-snapshot
Stochastic Modelling of Respiratory System Elastance for Mechanically Ventilated Respiratory Failure Patients
inferred← citeshttps://doi.org/10.1007/s10588-018-9276-6openalex-snapshot
Integrating simulation and signal processing in tracking complex social systems
inferred← citeshttps://doi.org/10.1007/s10827-014-0528-2openalex-snapshot
Stochastic representations of ion channel kinetics and exact stochastic simulation of neuronal dynamics
inferred← citeshttps://doi.org/10.1007/s10910-016-0620-0openalex-snapshot
Optimization problems in chemical reactions using continuous-time Markov chains
inferred← citeshttps://doi.org/10.1007/s10910-016-0684-xopenalex-snapshot
Novel phase-fitted symmetric splitting methods for chemical oscillators
inferred← citeshttps://doi.org/10.1007/s11042-017-5186-8openalex-snapshot
Data analytics and visualization for inspecting cancers and genes
inferred← citeshttps://doi.org/10.1007/s11222-013-9432-2openalex-snapshot
Piecewise Approximate Bayesian Computation: fast inference for discretely observed Markov models using a factorised posterior distribution
inferred← citeshttps://doi.org/10.1007/s11222-013-9440-2openalex-snapshot
A population Monte Carlo scheme with transformed weights and its application to stochastic kinetic models
inferred← citeshttps://doi.org/10.1007/s11222-015-9574-5openalex-snapshot
Bayesian computation: a summary of the current state, and samples backwards and forwards
inferred← citeshttps://doi.org/10.1007/s11222-017-9770-6openalex-snapshot
A network epidemic model for online community commissioning data
inferred← citeshttps://doi.org/10.1007/s11222-017-9789-8openalex-snapshot
Efficient $$\hbox {SMC}^2$$ SMC 2 schemes for stochastic kinetic models
inferred← citeshttps://doi.org/10.1007/s11222-019-09861-5openalex-snapshot
Efficient sampling of conditioned Markov jump processes
inferred← citeshttps://doi.org/10.1007/s11222-019-09883-zopenalex-snapshot
Timing observations of diffusions
inferred← citeshttps://doi.org/10.1007/s11222-021-10048-0openalex-snapshot
Anytime parallel tempering
inferred← citeshttps://doi.org/10.1007/s11222-022-10083-5openalex-snapshot
Augmented pseudo-marginal Metropolis–Hastings for partially observed diffusion processes
inferred← citeshttps://doi.org/10.1007/s11222-022-10163-6openalex-snapshot
On predictive inference for intractable models via approximate Bayesian computation
inferred← citeshttps://doi.org/10.1007/s11222-023-10311-6openalex-snapshot
Accelerating Bayesian inference for stochastic epidemic models using incidence data
inferred← citeshttps://doi.org/10.1007/s11222-025-10584-zopenalex-snapshot
Simulation based composite likelihood
inferred← citeshttps://doi.org/10.1007/s11538-018-0529-9openalex-snapshot
Mutation and Selection in Bacteria: Modelling and Calibration
inferred← citeshttps://doi.org/10.1007/s11538-019-00576-2openalex-snapshot
Exact Variance-Reduced Simulation of Lattice Continuous-Time Markov Chains with Applications in Reaction Networks
inferred← citeshttps://doi.org/10.1007/s11538-023-01185-wopenalex-snapshot
Stochastic Reaction Networks Within Interacting Compartments
inferred← citeshttps://doi.org/10.1007/s11831-021-09539-0openalex-snapshot
A Survey of Bayesian Calibration and Physics-informed Neural Networks in Scientific Modeling
inferred← citeshttps://doi.org/10.1007/s12080-019-0416-5openalex-snapshot
How to avoid an extinction time paradox
inferred← citeshttps://doi.org/10.1007/s12080-022-00530-4openalex-snapshot
Suppressing evolution of antibiotic resistance through environmental switching
inferred← citeshttps://doi.org/10.1007/s13762-019-02206-9openalex-snapshot
Novel model selection criteria on sparse biological networks
inferred← citeshttps://doi.org/10.1007/s40828-020-0108-1openalex-snapshot
Stochastic reaction, stochastic diffusion
inferred← citeshttps://doi.org/10.1007/s41965-020-00046-yopenalex-snapshot
A survey of gene regulatory networks modelling methods: from differential equations, to Boolean and qualitative bioinspired models
inferred← citeshttps://doi.org/10.1016/b978-0-12-409547-2.12333-9openalex-snapshot
Systems Biology: Methods and Applications
inferred← citeshttps://doi.org/10.1016/b978-0-12-802508-6.00025-9openalex-snapshot
Predicting Extinction of Biological Systems with Competition
inferred← citeshttps://doi.org/10.1016/b978-0-12-809633-8.20362-2openalex-snapshot
Stochastic Processes
inferred← citeshttps://doi.org/10.1016/b978-0-12-811353-0.00007-5openalex-snapshot
Using Computational Models to Study Aging
inferred← citeshttps://doi.org/10.1016/b978-0-12-816637-6.00012-9openalex-snapshot
Machine Learning in future intensive care—Classification of stochastic Petri Nets via continuous-time Markov chains
inferred← citeshttps://doi.org/10.1016/b978-0-12-817461-6.00011-1openalex-snapshot
Computational modeling of the control mechanisms involved in the respiratory system
inferred← citeshttps://doi.org/10.1016/b978-0-323-95502-7.00037-3openalex-snapshot
Stochastic Processes
inferred← citeshttps://doi.org/10.1016/bs.host.2018.07.012openalex-snapshot
Stochastic Population Models
inferred← citeshttps://doi.org/10.1016/bs.host.2024.07.002openalex-snapshot
Functional law of large numbers for an epidemic model with random effects
inferred← citeshttps://doi.org/10.1016/j.amc.2015.05.141openalex-snapshot
The stochastic SEIR model before extinction: Computational approaches
inferred← citeshttps://doi.org/10.1016/j.apnum.2014.10.005openalex-snapshot
Split-step Milstein methods for multi-channel stiff stochastic differential systems
inferred← citeshttps://doi.org/10.1016/j.bcmd.2013.07.007openalex-snapshot
Transcriptional hierarchies regulating early blood cell development
inferred← citeshttps://doi.org/10.1016/j.biosystems.2014.05.002openalex-snapshot
Fast Bayesian parameter estimation for stochastic logistic growth models
inferred← citeshttps://doi.org/10.1016/j.biosystems.2024.105342openalex-snapshot
A mathematical framework for the statistical interpretation of biological growth models
inferred← citeshttps://doi.org/10.1016/j.cels.2016.11.001openalex-snapshot
Analysis of Cell Lineage Trees by Exact Bayesian Inference Identifies Negative Autoregulation of Nanog in Mouse Embryonic Stem Cells
inferred← citeshttps://doi.org/10.1016/j.cels.2023.08.004openalex-snapshot
Studying stochastic systems biology of the cell with single-cell genomics data
inferred← citeshttps://doi.org/10.1016/j.ces.2014.10.030openalex-snapshot
Bayesian inference of chemical kinetic models from proposed reactions
inferred← citeshttps://doi.org/10.1016/j.chaos.2023.114034openalex-snapshot
Dimensionality reduction in stochastic complex dynamical networks
inferred← citeshttps://doi.org/10.1016/j.chom.2018.09.002openalex-snapshot
Infection-Induced Peroxisome Biogenesis Is a Metabolic Strategy for Herpesvirus Replication
inferred← citeshttps://doi.org/10.1016/j.cma.2023.116591openalex-snapshot
Automated translation and accelerated solving of differential equations on multiple GPU platforms
inferred← citeshttps://doi.org/10.1016/j.combustflame.2019.03.034openalex-snapshot
A split random time-stepping method for stiff and nonstiff detonation capturing
inferred← citeshttps://doi.org/10.1016/j.csbj.2014.10.003openalex-snapshot
Stochastic simulation in systems biology
inferred← citeshttps://doi.org/10.1016/j.csbj.2017.07.005openalex-snapshot
Multi-level and hybrid modelling approaches for systems biology
inferred← citeshttps://doi.org/10.1016/j.csda.2023.107760openalex-snapshot
Accelerating inference for stochastic kinetic models
inferred← citeshttps://doi.org/10.1016/j.csda.2024.107996openalex-snapshot
Latent event history models for quasi-reaction systems
inferred← citeshttps://doi.org/10.1016/j.drudis.2014.04.016openalex-snapshot
Deciphering molecular determinants of chemotherapy in gastrointestinal malignancy using systems biology approaches
inferred← citeshttps://doi.org/10.1016/j.ecolmodel.2023.110372openalex-snapshot
Modelling species invasion using a metapopulation model with variable mortality and stochastic birth-death processes
inferred← citeshttps://doi.org/10.1016/j.idm.2023.01.007openalex-snapshot
Likelihood-based estimation and prediction for a measles outbreak in Samoa
inferred← citeshttps://doi.org/10.1016/j.ifacol.2015.10.141openalex-snapshot
Modelling adrenaline secretion during counterregulatory response in Type 1 Diabetes for improved hypoglycaemia prediction
inferred← citeshttps://doi.org/10.1016/j.ifacol.2017.08.631openalex-snapshot
LTI Stochastic Processes: a Behavioral Perspective
inferred← citeshttps://doi.org/10.1016/j.ifacol.2023.01.019openalex-snapshot
Estimating Rates of Switching Between Cell States Using a Single Time Point Measurement
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2025.142805openalex-snapshot
Microbial cell factories for bioconversion of lignin to vanillin — Challenges and opportunities: A review
inferred← citeshttps://doi.org/10.1016/j.isci.2022.105010openalex-snapshot
Approximating solutions of the Chemical Master equation using neural networks
inferred← citeshttps://doi.org/10.1016/j.jcp.2019.108997openalex-snapshot
Data-driven, variational model reduction of high-dimensional reaction networks
inferred← citeshttps://doi.org/10.1016/j.jtbi.2015.01.015openalex-snapshot
Some mathematical models of intermolecular autophosphorylation
inferred← citeshttps://doi.org/10.1016/j.jtbi.2020.110255openalex-snapshot
A practical guide to pseudo-marginal methods for computational inference in systems biology
inferred← citeshttps://doi.org/10.1016/j.jtbi.2023.111414openalex-snapshot
The effect of bottleneck size on evolution in nested Darwinian populations
inferred← citeshttps://doi.org/10.1016/j.mbs.2018.05.009openalex-snapshot
Modeling transposable element dynamics with fragmentation equations
inferred← citeshttps://doi.org/10.1016/j.mbs.2022.108828openalex-snapshot
Modulation of nuclear and cytoplasmic mRNA fluctuations by time-dependent stimuli: Analytical distributions
inferred← citeshttps://doi.org/10.1016/j.mbs.2023.109108openalex-snapshot
Extinction in host–vector infection models and the role of heterogeneity
inferred← citeshttps://doi.org/10.1016/j.mbs.2024.109265openalex-snapshot
How to correctly fit an SIR model to data from an SEIR model?
inferred← citeshttps://doi.org/10.1016/j.molp.2015.01.017openalex-snapshot
XAANTAL2 (AGL14) Is an Important Component of the Complex Gene Regulatory Network that Underlies Arabidopsis Shoot Apical Meristem Transitions
inferred← citeshttps://doi.org/10.1016/j.nahs.2023.101401openalex-snapshot
Safety verification for Regime-Switching Jump Diffusions via barrier certificates
inferred← citeshttps://doi.org/10.1016/j.physa.2015.08.001openalex-snapshot
Type-dependent irreversible stochastic spin models for genetic regulatory networks at the level of promotion–inhibition circuitry
inferred← citeshttps://doi.org/10.1016/j.rinp.2025.108385openalex-snapshot
Analysis of a hybrid SIR epidemic model driven by dual white noises and Markovian switching
inferred← citeshttps://doi.org/10.1021/acs.jpcb.2c08932openalex-snapshot
Estimating and Assessing Differential Equation Models with Time-Course Data
inferred← citeshttps://doi.org/10.1021/acssynbio.5b00179openalex-snapshot
A Statistical Approach Reveals Designs for the Most Robust Stochastic Gene Oscillators
inferred← citeshttps://doi.org/10.1029/2019wr025099openalex-snapshot
The Representation of Hydrological Dynamical Systems Using Extended Petri Nets (EPN)
inferred← citeshttps://doi.org/10.1038/nprot.2014.025openalex-snapshot
A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation
inferred← citeshttps://doi.org/10.1038/s41598-017-12538-6openalex-snapshot
Using computer simulation models to investigate the most promising microRNAs to improve muscle regeneration during ageing
inferred← citeshttps://doi.org/10.1038/s41598-017-12606-xopenalex-snapshot
The effects of heterogeneity on stochastic cycles in epidemics
inferred← citeshttps://doi.org/10.1038/s41598-018-32961-7openalex-snapshot
First passage events in biological systems with non-exponential inter-event times
inferred← citeshttps://doi.org/10.1038/s41598-020-65750-2openalex-snapshot
Enhancement of gene expression noise from transcription factor binding to genomic decoy sites
inferred← citeshttps://doi.org/10.1038/s41598-020-72213-1openalex-snapshot
Identifying a stochastic clock network with light entrainment for single cells of Neurospora crassa
inferred← citeshttps://doi.org/10.1038/s41598-025-86332-0openalex-snapshot
Determining interaction directionality in complex biochemical networks from stationary measurements
inferred← citeshttps://doi.org/10.1049/iet-syb.2018.5035openalex-snapshot
Efficient anticorrelated variance reduction for stochastic simulation of biochemical reactions
inferred← citeshttps://doi.org/10.1063/1.4821167openalex-snapshot
Efficient stochastic simulation of chemical kinetics networks using a weighted ensemble of trajectories
inferred← citeshttps://doi.org/10.1073/pnas.1410597112openalex-snapshot
Inference for dynamic and latent variable models via iterated, perturbed Bayes maps
inferred← citeshttps://doi.org/10.1073/pnas.1414026112openalex-snapshot
Topological sensitivity analysis for systems biology
inferred← citeshttps://doi.org/10.1073/pnas.2116260119openalex-snapshot
Heritable changes in division speed accompany the diversification of single T cell fate
inferred← citeshttps://doi.org/10.1073/pnas.2417416122openalex-snapshot
Nonlinear memory in cell-division dynamics across species
inferred← citeshttps://doi.org/10.1074/jbc.rev119.009851openalex-snapshot
How and why to build a mathematical model: A case study using prion aggregation
inferred← citeshttps://doi.org/10.1080/01621459.2022.2060836openalex-snapshot
Metropolis–Hastings via Classification
inferred← citeshttps://doi.org/10.1080/07362994.2015.1116396openalex-snapshot
An efficient forward–reverse expectation-maximization algorithm for statistical inference in stochastic reaction networks
inferred← citeshttps://doi.org/10.1080/10618600.2016.1231064openalex-snapshot
Adaptive, Delayed-Acceptance MCMC for Targets With Expensive Likelihoods
inferred← citeshttps://doi.org/10.1080/10618600.2020.1775617openalex-snapshot
Delayed Acceptance ABC-SMC
inferred← citeshttps://doi.org/10.1080/10618600.2022.2093886openalex-snapshot
Exact Bayesian Inference for Discretely Observed Markov Jump Processes Using Finite Rate Matrices
inferred← citeshttps://doi.org/10.1080/17513758.2015.1033022openalex-snapshot
Bootstrapping least-squares estimates in biochemical reaction networks
inferred← citeshttps://doi.org/10.1086/704976openalex-snapshot
Thumper the Infinitesimal Rabbit: A Fictionalist Perspective on Some “Unimaginable” Model Systems in Biology
inferred← citeshttps://doi.org/10.1088/0034-4885/77/2/026601openalex-snapshot
Noise in biology
inferred← citeshttps://doi.org/10.1088/0266-5611/30/11/114005openalex-snapshot
Bayesian inference for hybrid discrete-continuous stochastic kinetic models
inferred← citeshttps://doi.org/10.1088/1367-2630/ab73c6openalex-snapshot
Relation between the convective field and the stationary probability distribution of chemical reaction networks
inferred← citeshttps://doi.org/10.1088/1742-5468/ab6ddfopenalex-snapshot
A Langevin dynamics approach to the distribution of animal move lengths
inferred← citeshttps://doi.org/10.1088/1751-8113/49/49/494002openalex-snapshot
Expectation propagation for continuous time stochastic processes
inferred← citeshttps://doi.org/10.1089/ars.2017.7367openalex-snapshot
Recent Advances in the Systems Biology of Aging
inferred← citeshttps://doi.org/10.1089/cmb.2014.0022openalex-snapshot
Stochastic Simulation of Notch Signaling Reveals Novel Factors That Mediate the Differentiation of Neural Stem Cells
inferred← citeshttps://doi.org/10.1093/bioinformatics/btaa002openalex-snapshot
sismonr: simulation of in silico multi-omic networks with adjustable ploidy and post-transcriptional regulation in R
inferred← citeshttps://doi.org/10.1093/bioinformatics/btab618openalex-snapshot
Hierarchical Bayesian models of transcriptional and translational regulation processes with delays
inferred← citeshttps://doi.org/10.1093/bioinformatics/btad205openalex-snapshot
The impossible challenge of estimating non-existent moments of the Chemical Master Equation
inferred← citeshttps://doi.org/10.1093/bioinformatics/btad670openalex-snapshot
Inferring delays in partially observed gene regulation processes
inferred← citeshttps://doi.org/10.1093/bioinformatics/btt069openalex-snapshot
Hybrid regulatory models: a statistically tractable approach to model regulatory network dynamics
inferred← citeshttps://doi.org/10.1093/bioinformatics/btv596openalex-snapshot
Pycellerator: an arrow-based reaction-like modelling language for biological simulations
inferred← citeshttps://doi.org/10.1093/bioinformatics/bty782openalex-snapshot
Filtering and inference for stochastic oscillators with distributed delays
inferred← citeshttps://doi.org/10.1093/bioinformatics/btz574openalex-snapshot
Bayesian inference of distributed time delay in transcriptional and translational regulation
inferred← citeshttps://doi.org/10.1093/femsle/fnz106openalex-snapshot
Cas3-stimulated runaway replication of modified ColE1 plasmids in Escherichia coli is temperature dependent
inferred← citeshttps://doi.org/10.1093/imatrm/tnab003openalex-snapshot
Learning stochastic closures using ensemble Kalman inversion
inferred← citeshttps://doi.org/10.1093/molbev/mst172openalex-snapshot
Using an Epidemiological Model for Phylogenetic Inference Reveals Density Dependence in HIV Transmission
inferred← citeshttps://doi.org/10.1093/pnasnexus/pgaf271openalex-snapshot
Efficient mathematical methodology to determine multistep mutant burden in spatially growing cell populations
inferred← citeshttps://doi.org/10.1098/rsif.2013.0505openalex-snapshot
Reverse engineering and identification in systems biology: strategies, perspectives and challenges
inferred← citeshttps://doi.org/10.1098/rsif.2013.0527openalex-snapshot
Modelling the efficacy of hyperthermia treatment
inferred← citeshttps://doi.org/10.1098/rsif.2016.0475openalex-snapshot
Transient absolute robustness in stochastic biochemical networks
inferred← citeshttps://doi.org/10.1098/rsif.2017.0340openalex-snapshot
Comparing two sequential Monte Carlo samplers for exact and approximate Bayesian inference on biological models
inferred← citeshttps://doi.org/10.1098/rsif.2020.0652openalex-snapshot
Identifiability analysis for stochastic differential equation models in systems biology
inferred← citeshttps://doi.org/10.1098/rsos.150499openalex-snapshot
Hodgkin–Huxley revisited: reparametrization and identifiability analysis of the classic action potential model with approximate Bayesian methods
inferred← citeshttps://doi.org/10.1098/rsos.241086openalex-snapshot
Categories of important edges in dynamics on graphs
inferred← citeshttps://doi.org/10.1098/rsta.2024.0214openalex-snapshot
Systematic structural discrepancy assessment for computer models
inferred← citeshttps://doi.org/10.1099/mic.0.067975-0openalex-snapshot
Tuning the dials of Synthetic Biology
inferred← citeshttps://doi.org/10.1101/028019openalex-snapshot
Stochastic Analysis Of An Incoherent Feedforward Genetic Motif
inferred← citeshttps://doi.org/10.1101/053231openalex-snapshot
Exact Bayesian lineage tree-based inference identifies Nanog negative autoregulation in mouse embryonic stem cells
inferred← citeshttps://doi.org/10.1101/072561openalex-snapshot
A hierarchical Bayesian framework for understanding the spatiotemporal dynamics of the intestinal epithelium
inferred← citeshttps://doi.org/10.1101/2019.12.24.887984openalex-snapshot
Enhancement of gene expression noise due to nonspecific transcription factor binding
inferred← citeshttps://doi.org/10.1101/2021.02.10.430675openalex-snapshot
Suppressing evolution through environmental switching
inferred← citeshttps://doi.org/10.1101/2022.01.06.475260openalex-snapshot
Moment-Based Estimation of State-Switching Rates in Cell Populations
inferred← citeshttps://doi.org/10.1101/2023.01.23.525259openalex-snapshot
Limits on Inferring Gene Regulatory Networks Subjected to Different Noise Mechanisms
inferred← citeshttps://doi.org/10.1101/2023.05.22.541681openalex-snapshot
Mixed-Feedback Architectures for Precise Event Timing Through Stochastic Accumulation of Biomolecules
inferred← citeshttps://doi.org/10.1101/2024.06.24.600326openalex-snapshot
Mutant scaling laws reveal that accelerated evolution via gene amplification requires spatially structured population growth
inferred← citeshttps://doi.org/10.1103/physreve.101.012402openalex-snapshot
Low-dimensional projection of stochastic cell-signalling dynamics via a variational approach
inferred← citeshttps://doi.org/10.1103/physreve.93.052119openalex-snapshot
Intrinsic noise in systems with switching environments
inferred← citeshttps://doi.org/10.1103/physrevlett.109.118101openalex-snapshot
Stochastic-Shielding Approximation of Markov Chains and its Application to Efficiently Simulate Random Ion-Channel Gating
inferred← citeshttps://doi.org/10.1103/physrevx.13.041006openalex-snapshot
Quantifying Rare Events in Stochastic Reaction-Diffusion Dynamics Using Tensor Networks
inferred← citeshttps://doi.org/10.1109/acc.2013.6580542openalex-snapshot
Stochastic analysis and inference of a two-state genetic promoter model
inferred← citeshttps://doi.org/10.1109/bigdata.2018.8622356openalex-snapshot
Predicting and Optimizing City-Scale Road Traffic Dynamics Using Trajectories of Individual Vehicles
inferred← citeshttps://doi.org/10.1109/cdc.2013.6761034openalex-snapshot
Stochastic analysis of genetic promoter architectures with memory
inferred← citeshttps://doi.org/10.1109/cdc.2015.7402384openalex-snapshot
On the use of hyperplane methods to compute the reachable set of controlled stochastic biochemical reaction networks
inferred← citeshttps://doi.org/10.1109/csci62032.2023.00098openalex-snapshot
Parameter Estimation in Biochemical Models Using Moment Approximations
inferred← citeshttps://doi.org/10.1109/cvpr52688.2022.00946openalex-snapshot
Contrastive Conditional Neural Processes
inferred← citeshttps://doi.org/10.1109/ecc.2014.6862244openalex-snapshot
Grey-box techniques for the identification of a controlled gene expression model
inferred← citeshttps://doi.org/10.1109/iceccs.2014.38openalex-snapshot
Model-Checking Based Approaches to Parameter Estimation of Gene Regulatory Networks
inferred← citeshttps://doi.org/10.1109/mcna50957.2020.9264291openalex-snapshot
Improved Estimation of Daily COVID-19 Rate from Incomplete Data
inferred← citeshttps://doi.org/10.1109/mwscas.2017.8053004openalex-snapshot
A memory optimized mersenne-twister random number generator
inferred← citeshttps://doi.org/10.1109/tac.2018.2798800openalex-snapshot
Computing the Projected Reachable Set of Stochastic Biochemical Reaction Networks Modeled by Switched Affine Systems
inferred← citeshttps://doi.org/10.1109/tbcas.2015.2453158openalex-snapshot
Conditional Moment Closure Schemes for Studying Stochastic Dynamics of Genetic Circuits
inferred← citeshttps://doi.org/10.1109/tcbb.2009.47openalex-snapshot
Efficient Formulations for Exact Stochastic Simulation of Chemical Systems
inferred← citeshttps://doi.org/10.1109/tcbb.2019.2894699openalex-snapshot
A Reaction-Based Model of the State Space of Chemical Reaction Systems Enables Efficient Simulations
inferred← citeshttps://doi.org/10.1109/tits.2021.3094758openalex-snapshot
Optimizing City-Scale Traffic Through Modeling Observations of Vehicle Movements
inferred← citeshttps://doi.org/10.1109/tmbmc.2021.3118943openalex-snapshot
Modeling Self-Assembly of Polymer-Based Wired Nano-Communication Channel
inferred← citeshttps://doi.org/10.1109/tnb.2019.2949261openalex-snapshot
Performance Enhancement of Diffusion-Based Molecular Communication
inferred← citeshttps://doi.org/10.1109/tnb.2022.3182587openalex-snapshot
Design and Evaluation of a Receiver for Wired Nano-Communication Networks
inferred← citeshttps://doi.org/10.1109/tnnls.2020.3042395openalex-snapshot
BayesFlow: Learning Complex Stochastic Models With Invertible Neural Networks
inferred← citeshttps://doi.org/10.1109/wsc.2014.7019887openalex-snapshot
Multi-level modeling and simulation of cell biological systems with ML-Rules - A tutorial
inferred← citeshttps://doi.org/10.1109/wsc.2015.7408465openalex-snapshot
Individual-based cod simulation with ML-Rules
showing the first 200 of 298 · page through all 298
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.