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Prdm1a and miR-499 act sequentially to restrict Sox6 activity to the fast-twitch muscle lineage in the zebrafish embryo

https://doi.org/10.1242/dev.070516
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/dvdy.20535openalex-snapshot
Slow and fast fiber isoform gene expression is systematically altered in skeletal muscle of the Sox6 mutant, p100H
inferredcites →https://doi.org/10.1002/dvdy.21223openalex-snapshot
Sox6 is required for normal fiber type differentiation of fetal skeletal muscle in mice
inferredcites →https://doi.org/10.1002/dvdy.21343openalex-snapshot
The Tol2kit: A multisite gateway‐based construction kit for Tol2 transposon transgenesis constructs
inferredcites →https://doi.org/10.1016/0168-9525(94)90221-6openalex-snapshot
A simple and efficient procedure for non-isotopic in situ hybridization to sectioned material
inferredcites →https://doi.org/10.1016/j.devcel.2009.10.013openalex-snapshot
A Family of microRNAs Encoded by Myosin Genes Governs Myosin Expression and Muscle Performance
inferredcites →https://doi.org/10.1016/j.ydbio.2004.11.014openalex-snapshot
Zebrafish narrowminded disrupts the transcription factor prdm1 and is required for neural crest and sensory neuron specification
inferredcites →https://doi.org/10.1016/j.ydbio.2006.08.042openalex-snapshot
Myogenic regulatory factors Myf5 and Myod function distinctly during craniofacial myogenesis of zebrafish
inferredcites →https://doi.org/10.1016/s0006-3495(01)76185-1openalex-snapshot
Cross-Correlation Analysis of Inner-Leaflet-Anchored Green Fluorescent Protein Co-Redistributed with IgE Receptors and Outer Leaflet Lipid Raft Components
inferredcites →https://doi.org/10.1016/s0925-4773(98)00209-3openalex-snapshot
Use of the Gal4-UAS technique for targeted gene expression in the zebrafish
inferredcites →https://doi.org/10.1038/embor.2008.73openalex-snapshot
Prdm1‐ and Sox6‐mediated transcriptional repression specifies muscle fibre type in the zebrafish embryo
inferredcites →https://doi.org/10.1038/ng1280openalex-snapshot
The B-cell maturation factor Blimp-1 specifies vertebrate slow-twitch muscle fiber identity in response to Hedgehog signaling
inferredcites →https://doi.org/10.1038/nrg2936openalex-snapshot
Gene silencing by microRNAs: contributions of translational repression and mRNA decay
inferredcites →https://doi.org/10.1073/pnas.1107413108openalex-snapshot
Concerted regulation of myofiber-specific gene expression and muscle performance by the transcriptional repressor Sox6
inferredcites →https://doi.org/10.1093/bioinformatics/bti473openalex-snapshot
MatInspector and beyond: promoter analysis based on transcription factor binding sites
inferredcites →https://doi.org/10.1093/nar/21.5.1087openalex-snapshot
Cloning of the zebrafishkrox-20gene (krx-20) and its expression during hindbrain development
inferredcites →https://doi.org/10.1101/gad.11.17.2163openalex-snapshot
Notochord induction of zebrafish slow muscle mediated by Sonic hedgehog
inferredcites →https://doi.org/10.1101/gad.195801openalex-snapshot
The u-boot mutation identifies a Hedgehog-regulated myogenic switch for fiber-type diversification in the zebrafish embryo
inferredcites →https://doi.org/10.1128/mcb.01370-09openalex-snapshot
Uncoupling of Expression of an Intronic MicroRNA and Its Myosin Host Gene by Exon Skipping
inferredcites →https://doi.org/10.1146/annurev.cellbio.18.012502.105758openalex-snapshot
Myogenic Regulatory Factors and the Specification of Muscle Progenitors in Vertebrate Embryos
inferredcites →https://doi.org/10.1152/physiolgenomics.00042.2009openalex-snapshot
Evidence of MyomiR network regulation of β-myosin heavy chain gene expression during skeletal muscle atrophy
inferredcites →https://doi.org/10.1242/dev.007088openalex-snapshot
Mef2s are required for thick filament formation in nascent muscle fibres
inferredcites →https://doi.org/10.1242/dev.015719openalex-snapshot
Expression of multiple slow myosin heavy chain genes reveals a diversity of zebrafish slow twitch muscle fibres with differing requirements for Hedgehog and Prdm1 activity
inferredcites →https://doi.org/10.1242/dev.028019openalex-snapshot
Differential requirements for myogenic regulatory factors distinguish medial and lateral somitic, cranial and fin muscle fibre populations
inferredcites →https://doi.org/10.1242/dev.122.11.3371openalex-snapshot
Identification of separate slow and fast muscle precursor cells in vivo, prior to somite formation
inferredcites →https://doi.org/10.3791/1229openalex-snapshot
Zebrafish Whole Mount High-Resolution Double Fluorescent In Situ Hybridization

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4349476openalex-extracted
inferred← citeshttps://doi.org/10.1002/9781118695999.ch4openalex-snapshot
Fishing for microRNAs in Toxicology
inferred← citeshttps://doi.org/10.1002/jcp.24848openalex-snapshot
Contractile and Metabolic Properties of Engineered Skeletal Muscle Derived From Slow and Fast Phenotype Mouse Muscle
inferred← citeshttps://doi.org/10.1007/s00018-014-1604-5openalex-snapshot
Comparative myogenesis in teleosts and mammals
inferred← citeshttps://doi.org/10.1007/s10126-016-9705-9openalex-snapshot
Evolution and Distribution of Teleost myomiRNAs: Functionally Diversified myomiRs in Teleosts
inferred← citeshttps://doi.org/10.1007/s10126-021-10066-zopenalex-snapshot
Regulation of the Expression of the Myosin Heavy Chain (MYH) Gene myh14 in Zebrafish Development
inferred← citeshttps://doi.org/10.1007/s10126-023-10237-0openalex-snapshot
Circulating MicroRNAs Indicative of Sex and Stress in the European Seabass (Dicentrarchus labrax): Toward the Identification of New Biomarkers
inferred← citeshttps://doi.org/10.1007/s10695-018-0463-7openalex-snapshot
Promoter analysis of the fish gene of slow/cardiac-type myosin heavy chain implicated in specification of muscle fiber types
inferred← citeshttps://doi.org/10.1007/s11160-016-9421-6openalex-snapshot
MicroRNA in aquaculture fishes: a way forward with high-throughput sequencing and a computational approach
inferred← citeshttps://doi.org/10.1016/b978-0-12-815872-2.00008-7openalex-snapshot
Cellular and molecular features of skeletal muscle growth and plasticity
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2017.08.004openalex-snapshot
Translational Control of the Myogenic Program in Developing, Regenerating, and Diseased Skeletal Muscle
inferred← citeshttps://doi.org/10.1016/j.celrep.2016.10.082openalex-snapshot
Nfix Induces a Switch in Sox6 Transcriptional Activity to Regulate MyHC-I Expression in Fetal Muscle
inferred← citeshttps://doi.org/10.1016/j.diff.2015.03.002openalex-snapshot
Adaxial cell migration in the zebrafish embryo is an active cell autonomous property that requires the Prdm1a transcription factor
inferred← citeshttps://doi.org/10.1016/j.ecoenv.2024.117170openalex-snapshot
Thyroid and growth hormone endocrine disruption and mechanisms of homosalate and octisalate using wild-type, thrαa-/-, and dre-miR-499-/- zebrafish embryo/larvae
inferred← citeshttps://doi.org/10.1016/j.freeradbiomed.2013.07.004openalex-snapshot
MicroRNAs in skeletal muscle biology and exercise adaptation
inferred← citeshttps://doi.org/10.1016/j.gene.2019.144049openalex-snapshot
Role of epigenetics in zebrafish development
inferred← citeshttps://doi.org/10.1016/j.lfs.2018.11.020openalex-snapshot
MicroRNA-499-5p regulates skeletal myofiber specification via NFATc1/MEF2C pathway and Thrap1/MEF2C axis
inferred← citeshttps://doi.org/10.1016/j.meatsci.2015.04.007openalex-snapshot
Polymorphisms and expression analysis of SOX-6 in relation to porcine growth, carcass, and meat quality traits
inferred← citeshttps://doi.org/10.1016/j.mod.2013.06.001openalex-snapshot
Control of muscle fibre-type diversity during embryonic development: The zebrafish paradigm
inferred← citeshttps://doi.org/10.1016/j.semcdb.2017.10.032openalex-snapshot
microRNAs in skeletal muscle development
inferred← citeshttps://doi.org/10.1016/j.taap.2017.11.019openalex-snapshot
Exposure to bisphenol S alters the expression of microRNA in male zebrafish
inferred← citeshttps://doi.org/10.1016/j.ydbio.2020.03.005openalex-snapshot
Cell fusion is differentially regulated in zebrafish post-embryonic slow and fast muscle
inferred← citeshttps://doi.org/10.1016/j.ydbio.2023.04.002openalex-snapshot
Slow myosin heavy chain 1 is required for slow myofibril and muscle fibre growth but not for myofibril initiation
inferred← citeshttps://doi.org/10.1016/j.yexcr.2012.11.020openalex-snapshot
Stimulatory and inhibitory mechanisms of slow muscle-specific myosin heavy chain gene expression in fish: Transient and transgenic analysis of torafugu MYH promoter in zebrafish embryos
inferred← citeshttps://doi.org/10.1016/j.yjmcc.2016.03.015openalex-snapshot
Cardiac-specific miRNA in cardiogenesis, heart function, and cardiac pathology (with focus on myocardial infarction)
inferred← citeshttps://doi.org/10.1038/s41536-024-00351-5openalex-snapshot
Skeletal muscle regeneration after extensive cryoinjury of caudal myomeres in adult zebrafish
inferred← citeshttps://doi.org/10.1038/srep26415openalex-snapshot
Electrical stimulation influences chronic intermittent hypoxia-hypercapnia induction of muscle fibre transformation by regulating the microRNA/Sox6 pathway
inferred← citeshttps://doi.org/10.1080/15476286.2020.1728102openalex-snapshot
miR-208b modulating skeletal muscle development and energy homoeostasis through targeting distinct targets
inferred← citeshttps://doi.org/10.1089/dna.2018.4408openalex-snapshot
Integrative microRNA–mRNA Analysis of Muscle Tissues in Qianhua Mutton Merino and Small Tail Han Sheep Reveals Key Roles for oar-miR-655-3p and oar-miR-381-5p
inferred← citeshttps://doi.org/10.1093/cvr/cvy253openalex-snapshot
A novel murine model for arrhythmogenic cardiomyopathy points to a pathogenic role of Wnt signalling and miRNA dysregulation
inferred← citeshttps://doi.org/10.1093/gbe/evu151openalex-snapshot
MicroRNA in Teleost Fish
inferred← citeshttps://doi.org/10.1093/molbev/mss125openalex-snapshot
Non Conservation of Function for the Evolutionarily Conserved Prdm1 Protein in the Control of the Slow Twitch Myogenic Program in the Mouse Embryo
inferred← citeshttps://doi.org/10.1101/2025.09.22.677369openalex-snapshot
A structural transition ensures robust formation of skeletal muscle
inferred← citeshttps://doi.org/10.1101/cshperspect.a041477openalex-snapshot
The Diversity of Skeletal Muscle Fiber Types
inferred← citeshttps://doi.org/10.1111/age.12145openalex-snapshot
Genomic architecture of histone 3 lysine 27 trimethylation during late ovine skeletal muscle development
inferred← citeshttps://doi.org/10.1134/s0026893316010076openalex-snapshot
Key regulators of skeletal myogenesis
inferred← citeshttps://doi.org/10.1167/tvst.9.10.1openalex-snapshot
Absence of Desmin in Myofibers of the Zebrafish Extraocular Muscles
inferred← citeshttps://doi.org/10.1186/1471-213x-11-59openalex-snapshot
Genome-wide mapping of Sox6 binding sites in skeletal muscle reveals both direct and indirect regulation of muscle terminal differentiation by Sox6
inferred← citeshttps://doi.org/10.1186/1471-2148-13-142openalex-snapshot
Evolution of the myosin heavy chain gene MYH14 and its intronic microRNA miR-499: muscle-specific miR-499 expression persists in the absence of the ancestral host gene
inferred← citeshttps://doi.org/10.1186/s12862-014-0196-xopenalex-snapshot
Evolution and genomic organization of muscle microRNAs in fish genomes
inferred← citeshttps://doi.org/10.1186/s12864-021-07441-4openalex-snapshot
A comparative analysis of heart microRNAs in vertebrates brings novel insights into the evolution of genetic regulatory networks
inferred← citeshttps://doi.org/10.1186/s12983-019-0318-9openalex-snapshot
Differential expression of myosin heavy chain isoforms in cardiac segments of gnathostome vertebrates and its evolutionary implications
inferred← citeshttps://doi.org/10.1186/s13059-025-03602-wopenalex-snapshot
The gene regulatory mechanisms shaping the heterogeneity of venom production in the Cape coral snake
inferred← citeshttps://doi.org/10.1186/s13395-014-0026-2openalex-snapshot
The role of Sox6 in zebrafish muscle fiber type specification
inferred← citeshttps://doi.org/10.1242/bio.20133921openalex-snapshot
Pbx and Prdm1a transcription factors differentially regulate subsets of the fast skeletal muscle program in zebrafish
inferred← citeshttps://doi.org/10.1242/bio.20136262openalex-snapshot
Targeted inactivation and identification of targets of the Gli2a transcription factor in the zebrafish
inferred← citeshttps://doi.org/10.1242/dev.096164openalex-snapshot
Prdm1a directly activates foxd3 and tfap2a during zebrafish neural crest specification
inferred← citeshttps://doi.org/10.1242/dev.171421openalex-snapshot
Muscle precursor cell movements in zebrafish are dynamic and require six-family genes
inferred← citeshttps://doi.org/10.1242/jeb.216390openalex-snapshot
Rainbow trout slow myoblast cell culture as a model to study slow skeletal muscle, and the characterization of mir-133 and mir-499 families as a case study
inferred← citeshttps://doi.org/10.1371/journal.pone.0119804openalex-snapshot
MicroRNA-499 Expression Distinctively Correlates to Target Genes sox6 and rod1 Profiles to Resolve the Skeletal Muscle Phenotype in Nile Tilapia
inferred← citeshttps://doi.org/10.1371/journal.pone.0141967openalex-snapshot
Differential microRNA Expression in Fast- and Slow-Twitch Skeletal Muscle of Piaractus mesopotamicus during Growth
inferred← citeshttps://doi.org/10.1371/journal.pone.0144615openalex-snapshot
Expression of the Troponin C at 41C Gene in Adult Drosophila Tubular Muscles Depends upon Both Positive and Negative Regulatory Inputs
inferred← citeshttps://doi.org/10.1387/ijdb.113416buopenalex-snapshot
Expression of Sox family genes in early lamprey development
inferred← citeshttps://doi.org/10.1534/genetics.116.192864openalex-snapshot
A Zebrafish Model for a Human Myopathy Associated with Mutation of the Unconventional Myosin MYO18B
inferred← citeshttps://doi.org/10.3389/fphys.2021.619710openalex-snapshot
Tissue-Engineered Skeletal Muscle Models to Study Muscle Function, Plasticity, and Disease
inferred← citeshttps://doi.org/10.3390/ani11010061openalex-snapshot
Molecular Mechanisms Regulating Muscle Plasticity in Fish
inferred← citeshttps://doi.org/10.3390/biology14121670openalex-snapshot
The Mutation of myomiR miR499 Impacts the Intermuscular Bones in Zebrafish
inferred← citeshttps://doi.org/10.3390/ijms23031180openalex-snapshot
Amino Acids and IGF1 Regulation of Fish Muscle Growth Revealed by Transcriptome and microRNAome Integrative Analyses of Pacu (Piaractus mesopotamicus) Myotubes
inferred← citeshttps://doi.org/10.3390/ijms25073894openalex-snapshot
Exploring the Integrated Role of miRNAs and lncRNAs in Regulating the Transcriptional Response to Amino Acids and Insulin-like Growth Factor 1 in Gilthead Sea Bream (Sparus aurata) Myoblasts
inferred← citeshttps://doi.org/10.3390/jdb7020012openalex-snapshot
The Developmental Phases of Zebrafish Myogenesis
inferred← citeshttps://doi.org/10.33915/etd.5998openalex-snapshot
Comprehensive Analyses of miRNA and DNA Methylation in 17beta-Estradiol Exposed Juvenile Rainbow Trout Skeletal Muscle
inferred← citeshttps://doi.org/10.5194/aab-65-275-2022openalex-snapshot
Sustained injection of miR-499-5p alters the gastrocnemius muscle metabolome in broiler chickens
inferred← citeshttps://doi.org/10.6084/m9.figshare.14168320openalex-snapshot
Additional file 3 of A comparative analysis of heart microRNAs in vertebrates brings novel insights into the evolution of genetic regulatory networks
inferred← citeshttps://doi.org/10.6084/m9.figshare.14168326openalex-snapshot
Additional file 5 of A comparative analysis of heart microRNAs in vertebrates brings novel insights into the evolution of genetic regulatory networks
inferred← citeshttps://doi.org/10.6084/m9.figshare.14168332openalex-snapshot
Additional file 7 of A comparative analysis of heart microRNAs in vertebrates brings novel insights into the evolution of genetic regulatory networks
inferred← citeshttps://doi.org/10.7868/s0026898416010079openalex-snapshot
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