On the public citation graph
Tracking early mammalian organogenesis – prediction and validation of differentiation trajectories at whole organism scale
0 signed · 118 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/dvg.20335openalex-snapshot
A global double‐fluorescent Cre reporter mouse
inferredcites →https://doi.org/10.1007/978-1-0716-1425-9_22openalex-snapshot
Single-Cell Analysis of Hematopoietic Stem Cells
inferredcites →https://doi.org/10.1007/bf00118371openalex-snapshot
Canonical analysis; a review with applications in ecology
inferredcites →https://doi.org/10.1016/j.cell.2018.02.001openalex-snapshot
Mapping the Mouse Cell Atlas by Microwell-Seq
inferredcites →https://doi.org/10.1016/j.cell.2019.01.006openalex-snapshot
Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming
inferredcites →https://doi.org/10.1016/j.cell.2020.04.048openalex-snapshot
An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells
inferredcites →https://doi.org/10.1016/j.cell.2021.04.004openalex-snapshot
A single-embryo, single-cell time-resolved model for mouse gastrulation
inferredcites →https://doi.org/10.1016/j.cell.2021.04.048openalex-snapshot
Integrated analysis of multimodal single-cell data
inferredcites →https://doi.org/10.1016/j.celrep.2015.05.036openalex-snapshot
Distinct Sources of Hematopoietic Progenitors Emerge before HSCs and Provide Functional Blood Cells in the Mammalian Embryo
inferredcites →https://doi.org/10.1016/j.celrep.2017.07.009openalex-snapshot
Single-Cell Landscape of Transcriptional Heterogeneity and Cell Fate Decisions during Mouse Early Gastrulation
inferredcites →https://doi.org/10.1016/j.devcel.2008.03.024openalex-snapshot
Notch Mediates the Segmental Specification of Angioblasts in Somites and Their Directed Migration toward the Dorsal Aorta in Avian Embryos
inferredcites →https://doi.org/10.1016/j.devcel.2020.11.013openalex-snapshot
Diverse Routes toward Early Somites in the Mouse Embryo
inferredcites →https://doi.org/10.1016/j.stemcr.2014.07.009openalex-snapshot
Tracing the Origin of the HSC Hierarchy Reveals an SCF-Dependent, IL-3-Independent CD43− Embryonic Precursor
inferredcites →https://doi.org/10.1016/j.ydbio.2016.07.013openalex-snapshot
Msx1 and Msx2 function together in the regulation of primordial germ cell migration in the mouse
inferredcites →https://doi.org/10.1016/j.ydbio.2017.03.032openalex-snapshot
Brachyury drives formation of a distinct vascular branchpoint critical for fetal-placental arterial union in the mouse gastrula
inferredcites →https://doi.org/10.1016/s1050-1738(01)00091-3openalex-snapshot
Allocation and Early Differentiation of Cardiovascular Progenitors in the Mouse Embryo
inferredcites →https://doi.org/10.1017/s001667230002872xopenalex-snapshot
The House Mouse: Atlas of Embryonic Development. By K. Theiler. Second printing, 1989. New York: Springer-Verlag. 178 pages. DM 168.00. ISBN 3 540059407.
inferredcites →https://doi.org/10.1038/nature13678openalex-snapshot
Haematopoietic stem cell induction by somite-derived endothelial cells controlled by meox1
inferredcites →https://doi.org/10.1038/nature18633openalex-snapshot
Resolving early mesoderm diversification through single-cell expression profiling
inferredcites →https://doi.org/10.1038/nprot.2014.006openalex-snapshot
Full-length RNA-seq from single cells using Smart-seq2
inferredcites →https://doi.org/10.1038/s12276-020-0482-1openalex-snapshot
Understanding paraxial mesoderm development and sclerotome specification for skeletal repair
inferredcites →https://doi.org/10.1038/s41467-018-05347-6openalex-snapshot
Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq
inferredcites →https://doi.org/10.1038/s41467-019-09234-6openalex-snapshot
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
inferredcites →https://doi.org/10.1038/s41467-020-14766-3openalex-snapshot
Trajectory-based differential expression analysis for single-cell sequencing data
inferredcites →https://doi.org/10.1038/s41467-021-21246-9openalex-snapshot
Inference and analysis of cell-cell communication using CellChat
inferredcites →https://doi.org/10.1038/s41467-022-32097-3openalex-snapshot
Scarf enables a highly memory-efficient analysis of large-scale single-cell genomics data
inferredcites →https://doi.org/10.1038/s41467-023-36612-yopenalex-snapshot
Alcam-a and Pdgfr-α are essential for the development of sclerotome-derived stromal cells that support hematopoiesis
inferredcites →https://doi.org/10.1038/s41556-017-0013-zopenalex-snapshot
Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation
inferredcites →https://doi.org/10.1038/s41556-019-0410-6openalex-snapshot
In vivo generation of haematopoietic stem/progenitor cells from bone marrow-derived haemogenic endothelium
inferredcites →https://doi.org/10.1038/s41586-019-0933-9openalex-snapshot
A single-cell molecular map of mouse gastrulation and early organogenesis
inferredcites →https://doi.org/10.1038/s41586-019-0969-xopenalex-snapshot
The single-cell transcriptional landscape of mammalian organogenesis
inferredcites →https://doi.org/10.1038/s41586-019-1127-1openalex-snapshot
The emergent landscape of the mouse gut endoderm at single-cell resolution
inferredcites →https://doi.org/10.1038/s41586-019-1184-5openalex-snapshot
Molecular recording of mammalian embryogenesis
inferredcites →https://doi.org/10.1038/s41586-019-1414-xopenalex-snapshot
Single-cell analysis of cardiogenesis reveals basis for organ-level developmental defects
inferredcites →https://doi.org/10.1038/s41586-019-1825-8openalex-snapshot
Multi-omics profiling of mouse gastrulation at single-cell resolution
inferredcites →https://doi.org/10.1038/s41586-020-2536-xopenalex-snapshot
The changing mouse embryo transcriptome at whole tissue and single-cell resolution
inferredcites →https://doi.org/10.1038/s41586-020-2552-xopenalex-snapshot
Epigenetic regulator function through mouse gastrulation
inferredcites →https://doi.org/10.1038/s41586-021-03416-3openalex-snapshot
Ex utero mouse embryogenesis from pre-gastrulation to late organogenesis
inferredcites →https://doi.org/10.1038/s41586-021-03775-xopenalex-snapshot
Molecular architecture of the developing mouse brain
inferredcites →https://doi.org/10.1038/s41586-022-05649-2openalex-snapshot
Reconstituting human somitogenesis in vitro
inferredcites →https://doi.org/10.1038/s41586-024-07069-wopenalex-snapshot
A single-cell time-lapse of mouse prenatal development from gastrula to birth
inferredcites →https://doi.org/10.1038/s41587-019-0071-9openalex-snapshot
A comparison of single-cell trajectory inference methods
inferredcites →https://doi.org/10.1038/s41587-023-01716-9openalex-snapshot
SEACells infers transcriptional and epigenomic cellular states from single-cell genomics data
inferredcites →https://doi.org/10.1038/s41587-023-01766-zopenalex-snapshot
Stabilized mosaic single-cell data integration using unshared features
inferredcites →https://doi.org/10.1038/s41588-022-01018-xopenalex-snapshot
Systematic reconstruction of cellular trajectories across mouse embryogenesis
inferredcites →https://doi.org/10.1038/s41598-019-41695-zopenalex-snapshot
From Louvain to Leiden: guaranteeing well-connected communities
inferredcites →https://doi.org/10.1084/jem.20181399openalex-snapshot
Hlf marks the developmental pathway for hematopoietic stem cells but not for erythro-myeloid progenitors
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btw313openalex-snapshot
Complex heatmaps reveal patterns and correlations in multidimensional genomic data
inferredcites →https://doi.org/10.1093/bioinformatics/btz625openalex-snapshot
BBKNN: fast batch alignment of single cell transcriptomes
inferredcites →https://doi.org/10.1093/nar/gkv007openalex-snapshot
limma powers differential expression analyses for RNA-sequencing and microarray studies
inferredcites →https://doi.org/10.1093/nar/gkz401openalex-snapshot
WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs
inferredcites →https://doi.org/10.1101/2020.12.10.419275openalex-snapshot
Generation of a new Tbx6-inducible reporter mouse line to trace presomitic mesoderm derivatives throughout development and in adults
inferredcites →https://doi.org/10.1101/2022.04.02.486748openalex-snapshot
SEACells: Inference of transcriptional and epigenomic cellular states from single-cell genomics data
inferredcites →https://doi.org/10.1101/2022.05.11.491403openalex-snapshot
Direct specification of lymphatic endothelium from non-venous angioblasts
inferredcites →https://doi.org/10.1103/physreve.83.036103openalex-snapshot
Unfolding communities in large complex networks: Combining defensive and offensive label propagation for core extraction
inferredcites →https://doi.org/10.1126/science.aao4174openalex-snapshot
Defining the earliest step of cardiovascular lineage segregation by single-cell RNA-seq
inferredcites →https://doi.org/10.1146/annurev.cellbio.20.010403.095114openalex-snapshot
FUNDAMENTALS OF PLANARIAN REGENERATION
inferredcites →https://doi.org/10.1182/blood-2006-06-031898openalex-snapshot
The megakaryocyte lineage originates from hemangioblast precursors and is an integral component both of primitive and of definitive hematopoiesis
inferredcites →https://doi.org/10.1182/blood-2016-12-689109openalex-snapshot
Runx transcription factors in the development and function of the definitive hematopoietic system
inferredcites →https://doi.org/10.1186/s12864-018-4772-0openalex-snapshot
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
inferredcites →https://doi.org/10.1186/s13059-019-1812-2openalex-snapshot
MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions
inferredcites →https://doi.org/10.1186/s13059-021-02414-yopenalex-snapshot
Coordinated changes in gene expression kinetics underlie both mouse and human erythroid maturation
inferredcites →https://doi.org/10.1186/s13059-022-02762-3openalex-snapshot
Single-cell multi-omics profiling links dynamic DNA methylation to cell fate decisions during mouse early organogenesis
inferredcites →https://doi.org/10.1242/dev.02269openalex-snapshot
Somite-derived cells replace ventral aortic hemangioblasts and provide aortic smooth muscle cells of the trunk
inferredcites →https://doi.org/10.1242/dev.118.4.1255openalex-snapshot
Staging of gastrulating mouse embryos by morphological landmarks in the dissecting microscope
inferredcites →https://doi.org/10.1242/dev.122.5.1363openalex-snapshot
Two distinct endothelial lineages in ontogeny, one of them related to hemopoiesis
inferredcites →https://doi.org/10.1242/dev.126.21.4691openalex-snapshot
The orderly allocation of mesodermal cells to the extraembryonic structures and the anteroposterior axis during gastrulation of the mouse embryo
inferredcites →https://doi.org/10.1242/dev.170506openalex-snapshot
Concepts and limitations for learning developmental trajectories from single cell genomics
inferredcites →https://doi.org/10.1242/dev.179788openalex-snapshot
Cellular diversity and lineage trajectory: insights from mouse single cell transcriptomes
inferredcites →https://doi.org/10.1242/dev.180398openalex-snapshot
A cellular atlas of Pitx2-dependent cardiac development
inferredcites →https://doi.org/10.12688/f1000research.9501.1openalex-snapshot
A step-by-step workflow for low-level analysis of single-cell RNA-seq data
inferredcites →https://doi.org/10.12688/f1000research.9501.2openalex-snapshot
A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor
inferredcites →https://doi.org/10.1371/journal.pone.0098679openalex-snapshot
ForceAtlas2, a Continuous Graph Layout Algorithm for Handy Network Visualization Designed for the Gephi Software
inferredcites →https://doi.org/10.3389/fcell.2020.606642openalex-snapshot
Hematopoiesis: A Layered Organization Across Chordate Species
inferredcites →https://doi.org/10.5694/j.1326-5377.1958.tb86500.xopenalex-snapshot
The Strategy of the Genes: A Discussion of Some Aspects of Theoretical Biology
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.2139/ssrn.4750446openalex-extracted
STAT3 Signalling Drives Tissue Expansion During Postimplantation Mouse Development
inferred← citeshttps://doi.org/10.1016/j.cell.2026.08.051openalex-snapshot
Shifts in embryonic oxygen levels cue heterochrony in limb initiation
inferred← citeshttps://doi.org/10.1016/j.celrep.2025.115506openalex-snapshot
STAT3 signaling enhances tissue expansion during postimplantation mouse development
inferred← citeshttps://doi.org/10.1016/j.celrep.2025.116047openalex-snapshot
A spatiotemporal atlas of mouse gastrulation and early organogenesis to explore axial patterning and project in vitro models onto in vivo space
inferred← citeshttps://doi.org/10.1016/j.celrep.2025.116373openalex-snapshot
A post-implantation model of human embryo development includes a definitive hematopoietic niche
inferred← citeshttps://doi.org/10.1016/j.devcel.2025.06.001openalex-snapshot
Eomes directs the formation of spatially and functionally diverse extraembryonic hematovascular tissues
inferred← citeshttps://doi.org/10.1016/j.devcel.2025.06.037openalex-snapshot
Marsupial single-cell transcriptomics identifies temporal diversity in mammalian developmental programs
inferred← citeshttps://doi.org/10.1016/j.devcel.2026.06.004openalex-snapshot
AXIN1 and AXIN2 regulate the WNT-signaling landscape to promote distinct mesoderm programs
inferred← citeshttps://doi.org/10.1016/j.exphem.2024.104283openalex-snapshot
Erythropoiesis in the mammalian embryo
inferred← citeshttps://doi.org/10.1016/j.exphem.2024.104284openalex-snapshot
Hematopoietic cluster formation: an essential prelude to blood cell genesis
inferred← citeshttps://doi.org/10.1016/j.gendis.2025.101524openalex-snapshot
Fibroblast growth factor 8: Multifaceted role in development and developmental disorder
inferred← citeshttps://doi.org/10.1016/j.isci.2025.112397openalex-snapshot
A single-cell and tissue-scale analysis suite resolves Mixl1’s role in heart development
inferred← citeshttps://doi.org/10.1016/j.jare.2025.11.022openalex-snapshot
Gestational exposure to PM2.5 impaired cardiac development through ANGPTL4-mediated mitochondrial metabolic dysfunction
inferred← citeshttps://doi.org/10.1038/s41422-025-01172-xopenalex-snapshot
Modeling post-gastrula development via bidirectional pluripotent stem cells
inferred← citeshttps://doi.org/10.1038/s41556-023-01174-0openalex-snapshot
An atlas of rabbit development as a model for single-cell comparative genomics
inferred← citeshttps://doi.org/10.1038/s41556-026-01923-xopenalex-snapshot
Mosaic gastruloids reveal a temporal restriction for developmental cell competition
inferred← citeshttps://doi.org/10.1038/s41586-024-07954-4openalex-snapshot
Temporal recording of mammalian development and precancer
inferred← citeshttps://doi.org/10.1038/s41592-026-03079-wopenalex-snapshot
Spatial 5mC-seq profiling of embryos and decidua after implantation in mammals
inferred← citeshttps://doi.org/10.1038/s44320-024-00045-6openalex-snapshot
Building and analyzing metacells in single-cell genomics data
inferred← citeshttps://doi.org/10.1038/s44320-024-00074-1openalex-snapshot
High order expression dependencies finely resolve cryptic states and subtypes in single cell data
inferred← citeshttps://doi.org/10.1097/bs9.0000000000000260openalex-snapshot
Single-cell transcriptomic dissection of two waves of endothelial-hematopoietic transition in a murine yolk sac
inferred← citeshttps://doi.org/10.1097/moh.0000000000000806openalex-snapshot
Developmental regulation of primitive erythropoiesis
inferred← citeshttps://doi.org/10.1101/2022.09.27.509783openalex-snapshot
Inter-gastruloid heterogeneity revealed by single cell transcriptomics time course: implications for organoid based perturbation studies
inferred← citeshttps://doi.org/10.1101/2023.10.11.561904openalex-snapshot
Bespoke single cell molecular and tissue-scale analysis reveals mechanisms underpinning development and disease in complex developing cell populations
inferred← citeshttps://doi.org/10.1101/2024.08.13.607790openalex-snapshot
Eomes directs the formation of spatially and functionally diverse extra-embryonic hematovascular tissues
inferred← citeshttps://doi.org/10.1101/2024.10.11.617785openalex-snapshot
STAT3 signalling enhances tissue expansion during postimplantation mouse development
inferred← citeshttps://doi.org/10.1101/2024.12.12.628063openalex-snapshot
A Spatiotemporal Atlas of Mouse Gastrulation and Early Organogenesis to Explore Axial Patterning and Project In Vitro Models onto In Vivo Space
inferred← citeshttps://doi.org/10.1101/2025.01.11.632562openalex-snapshot
Opposing Nodal and Wnt signalling activities govern the emergence of the mammalian body plan
inferred← citeshttps://doi.org/10.1126/science.add7564openalex-snapshot
Yolk sac cell atlas reveals multiorgan functions during human early development
inferred← citeshttps://doi.org/10.1146/annurev-cellbio-111524-021734openalex-snapshot
Emergence of the Endoderm in the Mammalian Embryo: From Cell Fate Specification to Gut Tube Formation
inferred← citeshttps://doi.org/10.1186/s13059-025-03771-8openalex-snapshot
Insights, opportunities, and challenges provided by large cell atlases
inferred← citeshttps://doi.org/10.1242/dev.204792openalex-snapshot
Distinct roles of Atf3 , Zfp711 and Bcl6b in early embryonic hematopoietic and endothelial lineage specification
inferred← citeshttps://doi.org/10.1242/dev.204822openalex-snapshot
In preprints: unfolding the spatial genomics frontier of mouse gastrulation
inferred← citeshttps://doi.org/10.1242/jcs.264487openalex-snapshot
Functional analysis of two uncharacterized genes, C130074G19Rik and I830077J02Rik , during early hematopoietic development
inferred← citeshttps://doi.org/10.64898/2025.12.20.695666openalex-snapshot
Human trunk embryoids with patterned anterior-posterior and dorsal-ventral body axes: utility for understanding human development and disease
inferred← citeshttps://doi.org/10.64898/2026.02.18.706600openalex-snapshot
Comparative Biology at Single-Cell Resolution: Rigorous Matching of Atlases for Cross-Species Analysis
inferred← citeshttps://doi.org/10.64898/2026.03.02.709113openalex-snapshot
Robust self-organization of livestock pluripotent stem cells into post-gastrulation embryo models with advanced neuronal and mesodermal structures
inferred← citeshttps://doi.org/10.64898/2026.07.04.735132openalex-snapshot
Endotome as a Source of Human Peri-Aortic Brown Adipocytes
inferred← citeshttps://doi.org/10.64898/2026.07.15.738670openalex-snapshot
Uhrf1 loss disrupts Ctcf-associated chromatin organization during early mouse embryogenesis
inferred← citeshttps://doi.org/10.64898/2026.10.01.755984openalex-snapshot
Optogenetic BMP4 models symmetry breaking and primitive streak formation in hPSCs
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.