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Systemic instruction of cell-mediated immunity by the intestinal microbiome

https://doi.org/10.12688/f1000research.14633.1

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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TLR agonists induce the differentiation of human bone marrow CD34+ progenitors into CD11c+ CD80/86+ DC capable of inducing a Th1‐type response

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Epithelial‐microbial crosstalk in polymeric Ig receptor deficient mice

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Intestinal Endotoxins As Mediators of Hepatic Injury—An Idea Whose Time Has Come Again

inferredcites →https://doi.org/10.1002/hep.22527openalex-snapshot

Liver sinusoidal endothelial cells depend on mannose receptor-mediated recruitment of lysosomal enzymes for normal degradation capacity

inferredcites →https://doi.org/10.1002/hep.24018openalex-snapshot

Enteric dysbiosis associated with a mouse model of alcoholic liver disease

inferredcites →https://doi.org/10.1006/cimm.1996.0261openalex-snapshot

Level of Myelopoiesis in the Bone Marrow Is Influenced by Intestinal Flora

inferredcites →https://doi.org/10.1007/s00535-016-1242-9openalex-snapshot

Microbiota metabolite short chain fatty acids, GPCR, and inflammatory bowel diseases

inferredcites →https://doi.org/10.1016/0168-8278(95)80433-1openalex-snapshot

Human Kupffer cells secrete IL-10 in response to lipopolysaccharide (LPS) challenge

inferredcites →https://doi.org/10.1016/j.ajpath.2012.09.010openalex-snapshot

Gut Bacteria Drive Kupffer Cell Expansion via MAMP-Mediated ICAM-1 Induction on Sinusoidal Endothelium and Influence Preservation-Reperfusion Injury after Orthotopic Liver Transplantation

inferredcites →https://doi.org/10.1016/j.ccell.2018.03.005openalex-snapshot

Emerging Concepts for Immune Checkpoint Blockade-Based Combination Therapies

inferredcites →https://doi.org/10.1016/j.cell.2007.09.047openalex-snapshot

Immunosurveillance by Hematopoietic Progenitor Cells Trafficking through Blood, Lymph, and Peripheral Tissues

inferredcites →https://doi.org/10.1016/j.cell.2016.10.027openalex-snapshot

The Central Nervous System and the Gut Microbiome

inferredcites →https://doi.org/10.1016/j.cell.2018.08.047openalex-snapshot

Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT

inferredcites →https://doi.org/10.1016/j.chom.2014.02.006openalex-snapshot

Gut Microbiota Promote Hematopoiesis to Control Bacterial Infection

inferredcites →https://doi.org/10.1016/j.chom.2016.10.016openalex-snapshot

The Liver at the Nexus of Host-Microbial Interactions

inferredcites →https://doi.org/10.1016/j.chom.2017.03.002openalex-snapshot

Age-Associated Microbial Dysbiosis Promotes Intestinal Permeability, Systemic Inflammation, and Macrophage Dysfunction

inferredcites →https://doi.org/10.1016/j.clnu.2009.05.011openalex-snapshot

Short chain fatty acids exchange across the gut and liver in humans measured at surgery

inferredcites →https://doi.org/10.1016/j.immuni.2006.04.008openalex-snapshot

Toll-like Receptors on Hematopoietic Progenitor Cells Stimulate Innate Immune System Replenishment

inferredcites →https://doi.org/10.1016/j.immuni.2009.01.009openalex-snapshot

T Cell-Mediated Autoimmune Disease Due to Low-Affinity Crossreactivity to Common Microbial Peptides

inferredcites →https://doi.org/10.1016/j.immuni.2010.06.001openalex-snapshot

Gut-Residing Segmented Filamentous Bacteria Drive Autoimmune Arthritis via T Helper 17 Cells

inferredcites →https://doi.org/10.1016/j.immuni.2011.02.016openalex-snapshot

Bone Marrow Mesenchymal Stem and Progenitor Cells Induce Monocyte Emigration in Response to Circulating Toll-like Receptor Ligands

inferredcites →https://doi.org/10.1016/j.immuni.2012.05.020openalex-snapshot

Priming of Natural Killer Cells by Nonmucosal Mononuclear Phagocytes Requires Instructive Signals from Commensal Microbiota

inferredcites →https://doi.org/10.1016/j.immuni.2014.08.009openalex-snapshot

TLR5-Mediated Sensing of Gut Microbiota Is Necessary for Antibody Responses to Seasonal Influenza Vaccination

inferredcites →https://doi.org/10.1016/j.immuni.2015.07.014openalex-snapshot

Microbiota-Dependent Activation of an Autoreactive T Cell Receptor Provokes Autoimmunity in an Immunologically Privileged Site

inferredcites →https://doi.org/10.1016/j.immuni.2015.09.012openalex-snapshot

The Intestinal Microbiota Contributes to the Ability of Helminths to Modulate Allergic Inflammation

inferredcites →https://doi.org/10.1016/j.immuni.2016.03.013openalex-snapshot

Gut Microbiota Drive Autoimmune Arthritis by Promoting Differentiation and Migration of Peyer’s Patch T Follicular Helper Cells

inferredcites →https://doi.org/10.1016/j.immuni.2016.09.009openalex-snapshot

Enterococcus hirae and Barnesiella intestinihominis Facilitate Cyclophosphamide-Induced Therapeutic Immunomodulatory Effects

inferredcites →https://doi.org/10.1016/j.immuni.2017.04.008openalex-snapshot

Homeostatic Immunity and the Microbiota

inferredcites →https://doi.org/10.1016/j.immuni.2018.08.004openalex-snapshot

Antibodies Set Boundaries Limiting Microbial Metabolite Penetration and the Resultant Mammalian Host Response

inferredcites →https://doi.org/10.1016/j.it.2016.03.002openalex-snapshot

Secretory IgA in the Coordination of Establishment and Maintenance of the Microbiota

inferredcites →https://doi.org/10.1016/j.it.2018.02.008openalex-snapshot

Antibiotics as Instigators of Microbial Dysbiosis: Implications for Asthma and Allergy

inferredcites →https://doi.org/10.1016/j.it.2018.04.002openalex-snapshot

The Intestinal Epithelium: Central Coordinator of Mucosal Immunity

inferredcites →https://doi.org/10.1016/j.it.2018.05.002openalex-snapshot

Liver–Microbiome Axis in Health and Disease

inferredcites →https://doi.org/10.1016/j.it.2018.12.008openalex-snapshot

The Intestinal Epithelium: Central Coordinator of Mucosal Immunity

inferredcites →https://doi.org/10.1016/j.jhep.2014.04.028openalex-snapshot

Transfer of MHC-class-I molecules among liver sinusoidal cells facilitates hepatic immune surveillance

inferredcites →https://doi.org/10.1016/j.jhep.2016.12.015openalex-snapshot

Liver sinusoidal endothelial cell cross-priming is supported by CD4 T cell-derived IL-2

inferredcites →https://doi.org/10.1016/j.jmb.2006.09.054openalex-snapshot

Signaling through Toll-like Receptor 7/8 Induces the Differentiation of Human Bone Marrow CD34+ Progenitor Cells along the Myeloid Lineage

inferredcites →https://doi.org/10.1016/j.mib.2016.10.003openalex-snapshot

Microbiome, metabolites and host immunity

inferredcites →https://doi.org/10.1016/j.molimm.2007.12.010openalex-snapshot

Lactobacillus casei suppresses experimental arthritis by down-regulating T helper 1 effector functions

inferredcites →https://doi.org/10.1016/s0002-9270(01)02319-xopenalex-snapshot

The Prevalence of Extraintestinal Diseases in Inflammatory Bowel Disease: A Population-Based Study

inferredcites →https://doi.org/10.1038/82161openalex-snapshot

Efficient presentation of exogenous antigen by liver endothelial cells to CD8+ T cells results in antigen-specific T-cell tolerance

inferredcites →https://doi.org/10.1038/ajg.2014.133openalex-snapshot

Fecal Microbiota Transplant for Treatment of Clostridium difficile Infection in Immunocompromised Patients

inferredcites →https://doi.org/10.1038/leu.2009.155openalex-snapshot

The TLR1/2 agonist PAM3CSK4 instructs commitment of human hematopoietic stem cells to a myeloid cell fate

inferredcites →https://doi.org/10.1038/nature10554openalex-snapshot

Commensal microbiota and myelin autoantigen cooperate to trigger autoimmune demyelination

inferredcites →https://doi.org/10.1038/nature10809openalex-snapshot

Inflammasome-mediated dysbiosis regulates progression of NAFLD and obesity

inferredcites →https://doi.org/10.1038/nature12726openalex-snapshot

Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation

inferredcites →https://doi.org/10.1038/nature13989openalex-snapshot

Tissue-resident macrophages originate from yolk-sac-derived erythro-myeloid progenitors

inferredcites →https://doi.org/10.1038/nature18848openalex-snapshot

The microbiota in adaptive immune homeostasis and disease

inferredcites →https://doi.org/10.1038/ncomms11639openalex-snapshot

Gut environment-induced intraepithelial autoreactive CD4+ T cells suppress central nervous system autoimmunity via LAG-3

inferredcites →https://doi.org/10.1038/ncomms13839openalex-snapshot

The microbiota maintain homeostasis of liver-resident γδT-17 cells in a lipid antigen/CD1d-dependent manner

inferredcites →https://doi.org/10.1038/ni.1991openalex-snapshot

Mice carrying a knock-in mutation of Aicda resulting in a defect in somatic hypermutation have impaired gut homeostasis and compromised mucosal defense

inferredcites →https://doi.org/10.1038/ni.2025openalex-snapshot

Border patrol: regulation of immunity, inflammation and tissue homeostasis at barrier surfaces by IL-22

inferredcites →https://doi.org/10.1038/ni.2604openalex-snapshot

Compartmentalized and systemic control of tissue immunity by commensals

inferredcites →https://doi.org/10.1038/ni.3780openalex-snapshot

Regulation of inflammation by microbiota interactions with the host

inferredcites →https://doi.org/10.1038/nm.3444openalex-snapshot

Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis

inferredcites →https://doi.org/10.1038/nm.4517openalex-snapshot

Current understanding of the human microbiome

inferredcites →https://doi.org/10.1038/nrc.2017.13openalex-snapshot

Microbiota: a key orchestrator of cancer therapy

inferredcites →https://doi.org/10.1038/srep20646openalex-snapshot

Scavenger receptor B1, the HDL receptor, is expressed abundantly in liver sinusoidal endothelial cells

inferredcites →https://doi.org/10.1053/j.gastro.2012.04.017openalex-snapshot

Intestinal Microbes Affect Phenotypes and Functions of Invariant Natural Killer T Cells in Mice

inferredcites →https://doi.org/10.1053/jhep.2001.25350openalex-snapshot

Toll–Like Receptor 4 Is Involved in the Mechanism of Early Alcohol–Induced Liver Injury in Mice

inferredcites →https://doi.org/10.1073/pnas.1000082107openalex-snapshot

Proinflammatory T-cell responses to gut microbiota promote experimental autoimmune encephalomyelitis

inferredcites →https://doi.org/10.1084/jem.193.6.671openalex-snapshot

A Dendritic Cell–Specific Intercellular Adhesion Molecule 3–Grabbing Nonintegrin (Dc-Sign)–Related Protein Is Highly Expressed on Human Liver Sinusoidal Endothelial Cells and Promotes HIV-1 Infection

inferredcites →https://doi.org/10.1097/bor.0000000000000190openalex-snapshot

The functional impact of the intestinal microbiome on mucosal immunity and systemic autoimmunity

inferredcites →https://doi.org/10.1111/nure.12027openalex-snapshot

Ethanol metabolism and its effects on the intestinal epithelial barrier

inferredcites →https://doi.org/10.1126/science.1219328openalex-snapshot

Microbial Exposure During Early Life Has Persistent Effects on Natural Killer T Cell Function

inferredcites →https://doi.org/10.1126/science.1240527openalex-snapshot

Commensal Bacteria Control Cancer Response to Therapy by Modulating the Tumor Microenvironment

inferredcites →https://doi.org/10.1126/science.1240537openalex-snapshot

The Intestinal Microbiota Modulates the Anticancer Immune Effects of Cyclophosphamide

inferredcites →https://doi.org/10.1126/science.aac4255openalex-snapshot

Commensal Bifidobacterium promotes antitumor immunity and facilitates anti–PD-L1 efficacy

inferredcites →https://doi.org/10.1126/science.aad1329openalex-snapshot

Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota

inferredcites →https://doi.org/10.1128/cmr.16.4.658-672.2003openalex-snapshot

Potential Uses of Probiotics in Clinical Practice

inferredcites →https://doi.org/10.1128/iai.50.2.437-441.1985openalex-snapshot

Myelopoiesis in experimentally contaminated specific-pathogen-free and germfree mice during oral administration of polymyxin

inferredcites →https://doi.org/10.1136/bmjopen-2017-019231openalex-snapshot

Efficacy and safety of faecal microbiota transplantation in patients with psoriatic arthritis: protocol for a 6-month, double-blind, randomised, placebo-controlled trial

inferredcites →https://doi.org/10.1136/gut.2008.156307openalex-snapshot

Toll-like receptors as targets in chronic liver diseases

inferredcites →https://doi.org/10.1146/annurev.immunol.021908.132629openalex-snapshot

The Liver as a Lymphoid Organ

inferredcites →https://doi.org/10.1172/jci40008openalex-snapshot

Conventional DCs reduce liver ischemia/reperfusion injury in mice via IL-10 secretion

inferredcites →https://doi.org/10.1182/blood-2015-10-675173openalex-snapshot

Peptidoglycan from the gut microbiota governs the lifespan of circulating phagocytes at homeostasis

inferredcites →https://doi.org/10.1182/blood-2016-03-708594openalex-snapshot

Antibiotics impair murine hematopoiesis by depleting the intestinal microbiota

inferredcites →https://doi.org/10.1189/jlb.5mr0617-216ropenalex-snapshot

The potential of the microbiota to influence vaccine responses

inferredcites →https://doi.org/10.1542/peds.2013-3937openalex-snapshot

Stool Microbiota and Vaccine Responses of Infants

inferredcites →https://doi.org/10.3390/pathogens2040606openalex-snapshot

The Gastrointestinal Microbiome and Musculoskeletal Diseases: A Beneficial Role for Probiotics and Prebiotics

inferredcites →https://doi.org/10.4049/jimmunol.1400762openalex-snapshot

Microbiota-Derived Compounds Drive Steady-State Granulopoiesis via MyD88/TICAM Signaling

inferredcites →https://doi.org/10.4049/jimmunol.175.3.1643openalex-snapshot

TLR-4 Regulates CD8+ T Cell Trapping in the Liver

inferredcites →https://doi.org/10.7326/m16-0271openalex-snapshot

Effect of Fecal Microbiota Transplantation on Recurrence in Multiply Recurrent Clostridium difficile Infection

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Microbiome analysis, the immune response and transplantation in the era of next generation sequencing

inferred← citeshttps://doi.org/10.1038/s41571-023-00803-9openalex-snapshot

Towards modulating the gut microbiota to enhance the efficacy of immune-checkpoint inhibitors

inferred← citeshttps://doi.org/10.1038/s41591-022-01965-2openalex-snapshot

Diet-driven microbial ecology underpins associations between cancer immunotherapy outcomes and the gut microbiome

inferred← citeshttps://doi.org/10.1038/s42003-021-02755-1openalex-snapshot

Microbial community networks across body sites are associated with susceptibility to respiratory infections in infants

inferred← citeshttps://doi.org/10.1089/ars.2019.8015openalex-snapshot

Particulate Matter Induces Tissue OxInflammation: From Mechanism to Damage

inferred← citeshttps://doi.org/10.1101/2019.12.11.871855openalex-snapshot

Early sexual dimorphism in the developing gut microbiome of northern elephant seals

inferred← citeshttps://doi.org/10.1111/jvim.17061openalex-snapshot

Safety profile and effects on the peripheral immune response of fecal microbiota transplantation in clinically healthy dogs

inferred← citeshttps://doi.org/10.1111/mec.15385openalex-snapshot

Early sexual dimorphism in the developing gut microbiome of northern elephant seals

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Type I IFN–induced IFN-γ instructs monocyte-mediated systemic bacterial protection during type 2 intestinal helminth infection

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Fecal microbiota transplantation alleviates immunosuppressant-associated diarrhea and recurrent urinary tract infection in kidney transplant recipients: a retrospective analysis

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Immunological and genetic features of pathogenetic association between psoriasis and colonic dysbiosis

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Gut microbiota as a biomarker and modulator of anti-tumor immunotherapy outcomes

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Interaction Between Human Microbiota, Immune System, and Hepatitis C Virus Infection: A Narrative Review

inferred← citeshttps://doi.org/10.3390/diagnostics9030080openalex-snapshot

Pathological Mechanisms Underlying Myalgic Encephalomyelitis/Chronic Fatigue Syndrome

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The Interplay between the Gut Microbiome and the Immune System in the Context of Infectious Diseases throughout Life and the Role of Nutrition in Optimizing Treatment Strategies

inferred← citeshttps://doi.org/10.3892/mco.2025.2847openalex-snapshot

Impact of gut microbiota on colorectal anastomotic healing (Review)

inferred← citeshttps://doi.org/10.4103/jpbs.jpbs_1377_25openalex-snapshot

Gut-Immune Interplay: Decoding the Microbiome’s Impact on Immunity and Diseases

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Review of an Unusual Case of Chronic Relapsing (×6) Zoster Sine Herpete: Immediate Response to High-dose Oral Acyclovir Therapy: Efficacy of the Expedited Classic Therapeutic Trial in an Era of Digital Medicine

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Microbiome-Immune Dynamics: Insights into Infectious Diseases

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Short-term dietary change rapidly remodels microbial community assemblages and reprogrammes systemic immune phenotypes

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