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Detecting miRNA Mentions and Relations in Biomedical Literature
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/jcp.20832openalex-snapshot
Identification of differentially expressed microRNAs by microarray: A possible role for microRNA genes in pituitary adenomas
inferredcites →https://doi.org/10.1016/0092-8674(93)90529-yopenalex-snapshot
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
inferredcites →https://doi.org/10.1016/j.cell.2009.01.002openalex-snapshot
MicroRNAs: Target Recognition and Regulatory Functions
inferredcites →https://doi.org/10.1016/j.jalz.2011.02.004openalex-snapshot
2011 Alzheimer's disease facts and figures
inferredcites →https://doi.org/10.1016/j.jbi.2009.08.013openalex-snapshot
BioPPISVMExtractor: A protein–protein interaction extractor for biomedical literature using SVM and rich feature sets
inferredcites →https://doi.org/10.1016/j.jbi.2011.05.002openalex-snapshot
miRWalk – Database: Prediction of possible miRNA binding sites by “walking” the genes of three genomes
inferredcites →https://doi.org/10.1016/s1071-5819(02)00127-1openalex-snapshot
The evolution of Protégé: an environment for knowledge-based systems development
inferredcites →https://doi.org/10.1038/nrc1840openalex-snapshot
Oncomirs — microRNAs with a role in cancer
inferredcites →https://doi.org/10.1039/c003961fopenalex-snapshot
An in silico analysis of microRNAs: Mining the miRNAome
inferredcites →https://doi.org/10.1073/pnas.0710263105openalex-snapshot
Loss of microRNA cluster miR-29a/b-1 in sporadic Alzheimer's disease correlates with increased BACE1/β-secretase expression
inferredcites →https://doi.org/10.1073/pnas.242606799openalex-snapshot
Frequent deletions and down-regulation of micro- RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia
inferredcites →https://doi.org/10.1074/jbc.m113.454066openalex-snapshot
An Androgen Receptor-MicroRNA-29a Regulatory Circuitry in Mouse Epididymis
inferredcites →https://doi.org/10.1093/bioinformatics/btt014openalex-snapshot
miRCancer: a microRNA–cancer association database constructed by text mining on literature
inferredcites →https://doi.org/10.1093/nar/gkn714openalex-snapshot
miR2Disease: a manually curated database for microRNA deregulation in human disease
inferredcites →https://doi.org/10.1093/nar/gkq1107openalex-snapshot
miRTarBase: a database curates experimentally validated microRNA–target interactions
inferredcites →https://doi.org/10.1093/nar/gkr1161openalex-snapshot
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support
inferredcites →https://doi.org/10.1109/bmei.2009.5302220openalex-snapshot
Extracting Protein-Protein Interaction from Biomedical Text Using Additional Shallow Parsing Information
inferredcites →https://doi.org/10.1155/2014/232817openalex-snapshot
Application of MicroRNA in Diagnosis and Treatment of Ovarian Cancer
inferredcites →https://doi.org/10.1186/1471-2105-11-135openalex-snapshot
miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature
inferredcites →https://doi.org/10.1186/1471-2105-12-s8-s1openalex-snapshot
Overview of the BioCreative III Workshop
inferredcites →https://doi.org/10.1186/1471-2105-13-172openalex-snapshot
A text-mining system for extracting metabolic reactions from full-text articles
inferredcites →https://doi.org/10.1186/1471-2105-4-20openalex-snapshot
Information extraction from full text scientific articles: Where are the keywords?
inferredcites →https://doi.org/10.1186/1471-2105-9-s3-s6openalex-snapshot
Comparative analysis of five protein-protein interaction corpora
inferredcites →https://doi.org/10.1186/1471-2164-12-244openalex-snapshot
Preferential regulation of miRNA targets by environmental chemicals in the human genome
inferredcites →https://doi.org/10.1186/gb-2008-9-s2-s2openalex-snapshot
Overview of BioCreative II gene mention recognition
inferredcites →https://doi.org/10.1186/gb-2010-11-1-r6openalex-snapshot
PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes
inferredcites →https://doi.org/10.1261/rna.7119904openalex-snapshot
Probing microRNAs with microarrays: Tissue specificity and functional inference
inferredcites →https://doi.org/10.1523/jneurosci.5065-07.2008openalex-snapshot
The Expression of MicroRNA miR-107 Decreases Early in Alzheimer's Disease and May Accelerate Disease Progression through Regulation of β-Site Amyloid Precursor Protein-Cleaving Enzyme 1
inferredcites →https://doi.org/10.2165/00002018-199920020-00002openalex-snapshot
The Medical Dictionary for Regulatory Activities (MedDRA)
inferredcites →https://doi.org/10.24406/publica-fhg-354479openalex-snapshot
ProMiner: Recognition of human gene and protein names using regularly updated dictionaries
inferredcites →https://doi.org/10.3115/1220575.1220666openalex-snapshot
A shortest path dependency kernel for relation extraction
inferredcites →https://doi.org/10.3389/fgene.2013.00150openalex-snapshot
The detection of microRNA associated with Alzheimer's disease in biological fluids using next-generation sequencing technologies
inferredcites →https://doi.org/10.48550/arxiv.1302.4964openalex-snapshot
Estimating Continuous Distributions in Bayesian Classifiers
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1007/978-1-0716-4690-8_10openalex-snapshot
Review on Advancement of AI in Cell Engineering and Molecular Biology
inferred← citeshttps://doi.org/10.1007/978-3-030-45669-6_22openalex-snapshot
Role of miRNAs in Abiotic and Biotic Stress Management in Crop Plants
inferred← citeshttps://doi.org/10.1007/978-981-97-3962-2_12openalex-snapshot
Advances in Biomedical Entity and Relation Extraction: Techniques and Applications
inferred← citeshttps://doi.org/10.1007/s13755-025-00400-3openalex-snapshot
Vaner2: towards more general biomedical named entity recognition using multi-task large language model encoders
inferred← citeshttps://doi.org/10.1038/s41597-023-02617-xopenalex-snapshot
Europe PMC annotated full-text corpus for gene/proteins, diseases and organisms
inferred← citeshttps://doi.org/10.1093/bib/bbab282openalex-snapshot
Deep learning methods for biomedical named entity recognition: a survey and qualitative comparison
inferred← citeshttps://doi.org/10.1093/bioinformatics/btab042openalex-snapshot
HunFlair: an easy-to-use tool for state-of-the-art biomedical named entity recognition
inferred← citeshttps://doi.org/10.1093/bioinformatics/btag418openalex-snapshot
Microbial named entity recognition and normalisation for AI-assisted literature review and meta-analysis
inferred← citeshttps://doi.org/10.1093/bioinformatics/btx228openalex-snapshot
Deep learning with word embeddings improves biomedical named entity recognition
inferred← citeshttps://doi.org/10.1093/bioinformatics/bty449openalex-snapshot
Transfer learning for biomedical named entity recognition with neural networks
inferred← citeshttps://doi.org/10.1093/bioinformatics/btz528openalex-snapshot
HUNER: improving biomedical NER with pretraining
inferred← citeshttps://doi.org/10.1093/database/baae066openalex-snapshot
Dataset of miRNA–disease relations extracted from textual data using transformer-based neural networks
inferred← citeshttps://doi.org/10.1093/database/baw090openalex-snapshot
MET network in PubMed: a text-mined network visualization and curation system
inferred← citeshttps://doi.org/10.1093/database/baz030openalex-snapshot
Statistical principle-based approach for recognizing and normalizing microRNAs described in scientific literature
inferred← citeshttps://doi.org/10.1093/nar/gkv1258openalex-snapshot
miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database
inferred← citeshttps://doi.org/10.1093/nar/gkz869openalex-snapshot
SEAweb: the small RNA Expression Atlas web application
inferred← citeshttps://doi.org/10.1101/2025.01.22.634367openalex-snapshot
Text Mining miRNA-gene Interactions for the mx-plore Platform
inferred← citeshttps://doi.org/10.1109/bibe.2016.60openalex-snapshot
Statistical Principle-Based Approach for Detecting miRNA-Target Gene Interaction Articles
inferred← citeshttps://doi.org/10.1109/jbhi.2024.3466294openalex-snapshot
Partial Annotation Learning for Biomedical Entity Recognition
inferred← citeshttps://doi.org/10.1186/s13321-016-0172-0openalex-snapshot
Recognizing chemicals in patents: a comparative analysis
inferred← citeshttps://doi.org/10.1186/s13326-016-0079-8openalex-snapshot
NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's disease
inferred← citeshttps://doi.org/10.1186/s13326-022-00280-6openalex-snapshot
We are not ready yet: limitations of state-of-the-art disease named entity recognizers
inferred← citeshttps://doi.org/10.1186/s40168-019-0742-2openalex-snapshot
Challenges in the construction of knowledge bases for human microbiome-disease associations
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1004391openalex-snapshot
miRTex: A Text Mining System for miRNA-Gene Relation Extraction
inferred← citeshttps://doi.org/10.1371/journal.pone.0171929openalex-snapshot
Extracting microRNA-gene relations from biomedical literature using distant supervision
inferred← citeshttps://doi.org/10.18653/v1/w17-2323openalex-snapshot
Noise Reduction Methods for Distantly Supervised Biomedical Relation Extraction
inferred← citeshttps://doi.org/10.2196/10497openalex-snapshot
Automated Extraction of Diagnostic Criteria From Electronic Health Records for Autism Spectrum Disorders: Development, Evaluation, and Application
inferred← citeshttps://doi.org/10.3390/ijms161226148openalex-snapshot
Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders
inferred← citeshttps://doi.org/10.3390/molecules27154710openalex-snapshot
Literature Mining of Disease Associated Noncoding RNA in the Omics Era
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