On the public citation graph
Approaches for containerized scientific workflows in cloud environments with applications in life science
0 signed · 37 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1016/j.cpc.2018.05.021openalex-snapshot
Enabling rootless Linux Containers in multi-user environments: The udocker tool
inferredcites →https://doi.org/10.1016/j.drudis.2017.01.014openalex-snapshot
Next-generation sequencing: big data meets high performance computing
inferredcites →https://doi.org/10.1038/nbt.3820openalex-snapshot
Nextflow enables reproducible computational workflows
inferredcites →https://doi.org/10.1038/nmeth.3959openalex-snapshot
OpenMS: a flexible open-source software platform for mass spectrometry data analysis
inferredcites →https://doi.org/10.1038/s41592-018-0046-7openalex-snapshot
Bioconda: sustainable and comprehensive software distribution for the life sciences
inferredcites →https://doi.org/10.1038/s41592-021-01102-wopenalex-snapshot
User-friendly, scalable tools and workflows for single-cell RNA-seq analysis
inferredcites →https://doi.org/10.1088/1742-6596/898/8/082021openalex-snapshot
Shifter: Containers for HPC
inferredcites →https://doi.org/10.1093/bioinformatics/bts480openalex-snapshot
Snakemake—a scalable bioinformatics workflow engine
inferredcites →https://doi.org/10.1093/bioinformatics/btt199openalex-snapshot
BioBlend: automating pipeline analyses within Galaxy and CloudMan
inferredcites →https://doi.org/10.1093/bioinformatics/btx192openalex-snapshot
BioContainers: an open-source and community-driven framework for software standardization
inferredcites →https://doi.org/10.1093/bioinformatics/bty699openalex-snapshot
Container-based bioinformatics with Pachyderm
inferredcites →https://doi.org/10.1093/gigascience/gix048openalex-snapshot
Bio-Docklets: virtualization containers for single-step execution of NGS pipelines
inferredcites →https://doi.org/10.1093/gigascience/giy149openalex-snapshot
PhenoMeNal: processing and analysis of metabolomics data in the cloud
inferredcites →https://doi.org/10.1093/gigascience/giz044openalex-snapshot
SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines
inferredcites →https://doi.org/10.1093/gigascience/giz054openalex-snapshot
Software engineering for scientific big data analysis
inferredcites →https://doi.org/10.1093/jamia/ocx120openalex-snapshot
Reproducible Bioconductor workflows using browser-based interactive notebooks and containers
inferredcites →https://doi.org/10.1093/nar/gky379openalex-snapshot
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
inferredcites →https://doi.org/10.1101/488643openalex-snapshot
Galaxy-Kubernetes integration: scaling bioinformatics workflows in the cloud
inferredcites →https://doi.org/10.1126/science.356.6338.646openalex-snapshot
Big data, big picture: Metabolomics meets systems biology
inferredcites →https://doi.org/10.1177/2472555218818756openalex-snapshot
Transfer Learning with Deep Convolutional Neural Networks for Classifying Cellular Morphological Changes
inferredcites →https://doi.org/10.1186/gb4161openalex-snapshot
Dissemination of scientific software with Galaxy ToolShed
inferredcites →https://doi.org/10.1186/s13321-016-0179-6openalex-snapshot
Towards agile large-scale predictive modelling in drug discovery with flow-based programming design principles
inferredcites →https://doi.org/10.12688/f1000research.15140.2openalex-snapshot
Recommendations for the packaging and containerizing of bioinformatics software
inferredcites →https://doi.org/10.1371/journal.pone.0152686openalex-snapshot
GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research
inferredcites →https://doi.org/10.1371/journal.pone.0177459openalex-snapshot
Singularity: Scientific containers for mobility of compute
inferredcites →https://doi.org/10.14716/ijtech.v8i4.9478openalex-snapshot
A Preliminary Study on Shifting from Virtual Machine to Docker Container for Insilico Drug Discovery in the Cloud
inferredcites →https://doi.org/10.3389/fphar.2018.01256openalex-snapshot
Predicting Off-Target Binding Profiles With Confidence Using Conformal Prediction
inferredcites →https://doi.org/10.4103/2153-3539.197197openalex-snapshot
Use of application containers and workflows for genomic data analysis
inferredcites →https://doi.org/10.4137/bbi.s28636openalex-snapshot
Biolmg.org: A Catalog of Virtual Machine Images for the Life Sciences
inferredcites →https://doi.org/10.7717/peerj-cs.158openalex-snapshot
Verifiability in computer-aided research: the role of digital scientific notations at the human-computer interface
inferredcites →https://doi.org/10.7717/peerj-cs.232openalex-snapshot
On-demand virtual research environments using microservices
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1007/978-3-032-03468-7_10openalex-snapshot
Bioremediation of Mining Pollutants: Eco-Innovative Approaches Involved in Sustainable Development
inferred← citeshttps://doi.org/10.3920/978-90-8686-940-4_13openalex-snapshot
13. Creating a good learning and sharing environment for bioinformatics
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.