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The Hologenome Concept: Helpful or Hollow?

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/0303-2647(92)90046-2openalex-snapshot
Phylogenetic consequences of symbioses: Eukarya and Eubacteria are not monophyletic taxa
inferredcites →https://doi.org/10.1038/35024074openalex-snapshot
Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS
inferredcites →https://doi.org/10.1038/377520a0openalex-snapshot
Mutual policing and repression of competition in the evolution of cooperative groups
inferredcites →https://doi.org/10.1038/nrmicro1635openalex-snapshot
The role of microorganisms in coral health, disease and evolution
inferredcites →https://doi.org/10.1038/nrmicro1969openalex-snapshot
Wolbachia: master manipulators of invertebrate biology
inferredcites →https://doi.org/10.1038/nrmicro2974openalex-snapshot
The gut microbiota — masters of host development and physiology
inferredcites →https://doi.org/10.1038/nrmicro957openalex-snapshot
The winnowing: establishing the squid–vibrio symbiosis
inferredcites →https://doi.org/10.1073/pnas.0611659104openalex-snapshot
Symbiosis as an adaptive process and source of phenotypic complexity
inferredcites →https://doi.org/10.1073/pnas.072660299openalex-snapshot
Conflicting levels of selection in the accumulation of mitochondrial defects in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1073/pnas.0908446106openalex-snapshot
Opportunistic pathogens enriched in showerhead biofilms
inferredcites →https://doi.org/10.1073/pnas.1007667108openalex-snapshot
Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution
inferredcites →https://doi.org/10.1073/pnas.1013465108openalex-snapshot
Aphid genome expression reveals host–symbiont cooperation in the production of amino acids
inferredcites →https://doi.org/10.1073/pnas.1119212109openalex-snapshot
Cellular mechanism for selective vertical transmission of an obligate insect symbiont at the bacteriocyte–embryo interface
inferredcites →https://doi.org/10.1073/pnas.1218525110openalex-snapshot
Animals in a bacterial world, a new imperative for the life sciences
inferredcites →https://doi.org/10.1073/pnas.1304960110openalex-snapshot
Distinct antimicrobial peptide expression determines host species-specific bacterial associations
inferredcites →https://doi.org/10.1073/pnas.1421388112openalex-snapshot
Heritable symbiosis: The advantages and perils of an evolutionary rabbit hole
inferredcites →https://doi.org/10.1086/284302openalex-snapshot
Evolution of Insect/Host Plant Relationships
inferredcites →https://doi.org/10.1098/rspb.2012.0414openalex-snapshot
The central role of the host cell in symbiotic nitrogen metabolism
inferredcites →https://doi.org/10.1111/1574-6976.12025openalex-snapshot
The gut microbiota of insects – diversity in structure and function
inferredcites →https://doi.org/10.1111/j.1462-2920.2009.01995.xopenalex-snapshot
The hologenome theory of evolution contains Lamarckian aspects within a Darwinian framework
inferredcites →https://doi.org/10.1111/j.1462-2920.2011.02511.xopenalex-snapshot
Low‐diversity bacterial community in the gut of the fruitfly Drosophila melanogaster
inferredcites →https://doi.org/10.1111/j.1474-919x.1962.tb08690.xopenalex-snapshot
Animal Dispersion in Relation to Social Behaviour
inferredcites →https://doi.org/10.1111/j.1558-5646.1964.tb01674.xopenalex-snapshot
BUTTERFLIES AND PLANTS: A STUDY IN COEVOLUTION
inferredcites →https://doi.org/10.1111/j.1558-5646.2011.01454.xopenalex-snapshot
THE ROLES OF HOST EVOLUTIONARY RELATIONSHIPS (GENUS: NASONIA) AND DEVELOPMENT IN STRUCTURING MICROBIAL COMMUNITIES
inferredcites →https://doi.org/10.1111/j.1574-6976.2008.00123.xopenalex-snapshot
Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution
inferredcites →https://doi.org/10.1126/science.1080857openalex-snapshot
Traces of Human Migrations in Helicobacter pylori Populations
inferredcites →https://doi.org/10.1126/science.1188235openalex-snapshot
Adaptation via Symbiosis: Recent Spread of a Drosophila Defensive Symbiont
inferredcites →https://doi.org/10.1126/science.1225977openalex-snapshot
Insect Herbivores Drive Real-Time Ecological and Evolutionary Change in Plant Populations
inferredcites →https://doi.org/10.1126/science.1240659openalex-snapshot
The Hologenomic Basis of Speciation: Gut Bacteria Cause Hybrid Lethality in the Genus Nasonia
inferredcites →https://doi.org/10.1126/science.1256708openalex-snapshot
Response to Comment on “The hologenomic basis of speciation: Gut bacteria cause hybrid lethality in the genus Nasonia ”
inferredcites →https://doi.org/10.1128/aem.68.1.389-396.2002openalex-snapshot
Capsule-Transmitted Gut Symbiotic Bacterium of the Japanese Common Plataspid Stinkbug, Megacopta punctatissima
inferredcites →https://doi.org/10.1128/microbe.8.152.1openalex-snapshot
Superorganisms and Holobionts
inferredcites →https://doi.org/10.1146/annurev.ecolsys.19.1.513openalex-snapshot
VICARIANCE BIOGEOGRAPHY
inferredcites →https://doi.org/10.1146/annurev.en.35.010190.001535openalex-snapshot
Evolution Of Specialization In Insect-Umbellifer Associations
inferredcites →https://doi.org/10.1146/annurev.genet.41.110306.130119openalex-snapshot
Genomics and Evolution of Heritable Bacterial Symbionts
inferredcites →https://doi.org/10.1242/jeb.046540openalex-snapshot
The making of a photosynthetic animal
inferredcites →https://doi.org/10.1371/journal.pbio.1000002openalex-snapshot
The Bacterial Symbiont Wolbachia Induces Resistance to RNA Viral Infections in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pbio.1000546openalex-snapshot
Evolutionary Relationships of Wild Hominids Recapitulated by Gut Microbial Communities
inferredcites →https://doi.org/10.1371/journal.pbio.1002098openalex-snapshot
Relatedness, Conflict, and the Evolution of Eusociality
inferredcites →https://doi.org/10.1371/journal.pbio.1002226openalex-snapshot
Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes
inferredcites →https://doi.org/10.1371/journal.pgen.1002272openalex-snapshot
Bacterial Communities of Diverse Drosophila Species: Ecological Context of a Host–Microbe Model System
inferredcites →https://doi.org/10.1371/journal.pone.0041433openalex-snapshot
Selfish Little Circles: Transmission Bias and Evolution of Large Deletion-Bearing Mitochondrial DNA in Caenorhabditis briggsae Nematodes
inferredcites →https://doi.org/10.1371/journal.pone.0086995openalex-snapshot
Metamorphosis of a Butterfly-Associated Bacterial Community
inferredcites →https://doi.org/10.2307/3564964openalex-snapshot
Animal Dispersion in Relation to Social Behaviour
inferredcites →https://doi.org/10.3201/eid0604.000402openalex-snapshot
Male-Killing Bacteria in Insects: Mechanisms, Incidence, and Implications
inferredcites →https://doi.org/10.3354/meps243001openalex-snapshot
Diversity and distribution of coral-associated bacteria
inferredcites →https://doi.org/10.7554/elife.00013openalex-snapshot
A bacterial sulfonolipid triggers multicellular development in the closest living relatives of animals

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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A process ontology of organisms and its connection to biological individuality concepts
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The Effect of Non‐Self Genes on the Behaviour of Hosts
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The importance of scale in comparative microbiome research: New insights from the gut and glands of captive and wild lemurs
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Microbiome‐Germline Interactions and Their Transgenerational Implications
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Diet, Gut Microbes and Host Mate Choice
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Have Causal Claims About the Gut Microbiome Been Over‐Hyped?
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Modeling the evolution of interconnected processes: It is the song and the singers
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Ökosystem Darm
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The evolution of entomopathogeny in nematodes
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Describing endosymbiont–host interactions within the parasitism–mutualism continuum
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Genetic variation in Breviolum antillogorgium , a coral reef symbiont, in response to temperature and nutrients
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Quaternary Climatic Changes and Biogeographic Barriers Drove Codiversification in the Obligate Mutualism Between Camponotus laevigatus and Its Endosymbiont Blochmanniella
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Within‐community variation of interspecific divergence patterns in passerine gut microbiota
inferred← citeshttps://doi.org/10.1002/jez.b.22915openalex-snapshot
The concept of the hologenome, an epigenetic phenomenon, challenges aspects of the modern evolutionary synthesis
inferred← citeshttps://doi.org/10.1002/lno.12184openalex-snapshot
Grazing by an endemic atyid shrimp controls microbial communities in the Hawaiian anchialine ecosystem
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Geographical separation and physiology drive differentiation of microbial communities of two discrete populations of the bat Leptonycteris yerbabuenae
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Introduction
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The Extended Microbiota: How Microbes Shape Plant-Insect Interactions
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Endosymbiont-Mediated Adaptive Responses to Stress in Holobionts
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Evolution from Free-Living Bacteria to Endosymbionts of Insects: Genomic Changes and the Importance of the Chaperonin GroEL
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Microbiomes
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Microbiomes: Some Philosophical and Sociological Implications
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Transmission of Hologenomes Between Generations: Mothers Matter Most
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Lactobacilli: Unusual Genome Complexity with Huge Adaptability to the Environment
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Coral Conservation from the Genomic Perspective on Symbiodiniaceae Diversity and Function in the Holobiont
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Vitalism and Its Legacy in Twentieth Century Life Sciences and Philosophy
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Metabolism in Crisis? A New Interplay Between Physiology and Ecology
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Wholobionts and Viruses
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Evolutionary Perspectives on the Human Gut Microbiome
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Is ITSNTS Just an Instance of Process Epistemology?
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Microbial Communities in Extreme and Marginal Coral Reefs
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When Mechanisms Are Not Enough: The Origin of Eukaryotes and Scientific Explanation
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Evolutionary Perspectives on the Human Gut Microbiome
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Endophytes: The Other Maize Genome
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After the Taxonomic Identification Phase: Addressing the Functions of Symbiotic Communities Within Marine Invertebrates
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Exploring Microbial Diversity of Arid Regions of Globe for Agricultural Sustainability: A Revisit
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Gut Microbiota in Decapod Shrimps: Evidence of Phylosymbiosis
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Consistency of Bacterial Communities in a Parasitic Worm: Variation Throughout the Life Cycle and Across Geographic Space
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Phylosymbiotic Structures of the Microbiota in Mollitrichosiphum tenuicorpus (Hemiptera: Aphididae: Greenideinae)
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Host Phylogeny Structures the Gut Bacterial Community Within Galerucella Leaf Beetles
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Understanding immune function as a pace of life trait requires environmental context
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Adaptive Evolution in the Mammalian Gut Microbiota: Insights and Discoveries
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Nest composition, stable isotope ratios and microbiota unravel the feeding behaviour of an inquiline termite
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Dances with dogs: interspecies play and a case for sympoietic enactivism
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Comparative analysis of root microbiomes in four Swertia species from Taiwan
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The role of insect gut microbiota in host fitness, detoxification and nutrient supplementation
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It’s the song, not the singer: an exploration of holobiosis and evolutionary theory
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Holobionts and the ecology of organisms: Multi-species communities or integrated individuals?
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Problems of multi-species organisms: endosymbionts to holobionts
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The individuality thesis (3 ways)
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Microorganisms as scaffolds of host individuality: an eco-immunity account of the holobiont
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Microbiome causality: further reflections (a response to our commentators)
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Does nature learn? Information integration and rare events in systems of increasing complexity
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Defending the importance of lineage-forming reproduction in evolution by natural selection
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Conserve the germs: the gut microbiota and adaptive potential
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How Research on Microbiomes is Changing Biology: A Discussion on the Concept of the Organism
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The role of genetic variation in Zea mays response to beneficial endophytes
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Rapid adaptation of Brachionus angularis (Rotifera) to invasion by Brachionus calyciflorus
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Rapid adaptation to near extinction in microbial experimental evolution
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Biological Individuality and Other Issues in Contemporary Philosophy of Biology (15 September 2018, University of Salzburg, Austria)
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Role of Chemical Mediators in Aquatic Interactions across the Prokaryote–Eukaryote Boundary
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Solidago canadensis and its endophytes as a potential self-degrading system during ex-situ decomposition
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Evolution by means of natural selection without reproduction: revamping Lewontin’s account
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Rethinking hereditary relations: the reconstitutor as the evolutionary unit of heredity
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Technology-driven surrogates and the perils of epistemic misalignment: an analysis in contemporary microbiome science
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Scientific Discovery and Inference: Between the Lab and Field in Biology
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Conservation metagenomics: a new branch of conservation biology
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Animal gut microbes and microbiomes in the 21st century and beyond
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The Symbiotic Self
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Co-niche construction between hosts and symbionts: ideas and evidence
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The hologenome concept: we need to incorporate function
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Some theoretical insights into the hologenome theory of evolution and the role of microbes in speciation
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Correction to: Some theoretical insights into the hologenome theory of evolution and the role of microbes in speciation
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Do concepts of individuality account for individuation practices in studies of host–parasite systems? A modeling account of biological individuality
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Local control of resource allocation is sufficient to model optimal dynamics in syntrophic systems
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‘The importance of symbiosis in philosophy of biology: an analysis of the current debate on biological individuality and its historical roots’
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Engineering coral microbiomes for climate resilience: modular consortia, programmable microbes, and scalable restoration
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A survey of bacterial communities reveals host-specific associations across multiple Pentatomomorpha species in France
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Holobionts as Units of Selection and a Model of Their Population Dynamics and Evolution
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Criteria for Holobionts from Community Genetics
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Vindicating Lineage Eliminativism
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The Unit of Selection and the Theory of Evolution by Natural Selection Without Lineage Formation
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Options and opportunities for manipulation of drought traits using endophytes in crops
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Multispecies individuals
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The stability of traits conception of the hologenome: An evolutionary account of holobiont individuality
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The holobiont self: understanding immunity in context
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Scrutinizing microbiome determinism: why deterministic hypotheses about the microbiome are conceptually ungrounded
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Two kinds of evolutionary individuals: the concept of common interest as an evolutionary foundation of dualism on biological individuality
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Genomic Diversity and Evolution of Rhizobia
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Thermodynamics of secondary metabolism: The triumph of living systems
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Niche construction and the transition to herbivory: Phenotype switching and the organization of new nutritional modes
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Microbiome of reproductive organs of trees
inferred← citeshttps://doi.org/10.1016/b978-0-12-822563-9.00038-xopenalex-snapshot
Microbial Symbioses
inferred← citeshttps://doi.org/10.1016/b978-0-323-95890-5.00010-7openalex-snapshot
Host-pathogen interactions with special reference to microbiota analysis and integration of systems biology approaches
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Seed microbiome genomics
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The gut-brain axis: Learning from social insects
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The role of earthworms in agronomy: Consensus, novel insights and remaining challenges
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Parasite-associated microbiomes: An unseen microenvironment
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Review: The genetic architecture of host-microbiota interactions in livestock: A comprehensive review and critical appraisal
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Antibiotic use and microbiome function
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The microbiome in threatened species conservation
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Serial Endosymbiosis Theory: From biology to astronomy and back to the origin of life
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Honey bee gut dysbiosis: a novel context of disease ecology
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The gut microbiome
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Phylogenetic and Comparative Genomic Analysis of Lactobacillus fermentum Strains and the Key Genes Related to their Intestinal Anti-Inflammatory Effects
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Host-microbiome interaction in fish and shellfish: An overview
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Exploring plant symbiotic microbial dynamics in metal hyperaccumulators for phytoremediation
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What shapes a microbiome? Differences in bacterial communities associated with helminth-amphipod interactions
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Assessment of the structural and functional diversities of plant microbiota: Achievements and challenges – A review
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Symbiosis in eukaryotic evolution
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From endosymbiosis to holobionts: Evaluating a conceptual legacy
inferred← citeshttps://doi.org/10.1016/j.mib.2016.04.007openalex-snapshot
Transitions in individuality through symbiosis
inferred← citeshttps://doi.org/10.1016/j.mib.2017.11.023openalex-snapshot
Road MAPs to engineer host microbiomes
inferred← citeshttps://doi.org/10.1016/j.micres.2026.128591openalex-snapshot
Microbiome-mediated plant immunity: Molecular signalling, community assembly, and emerging intergenerational feedback
inferred← citeshttps://doi.org/10.1016/j.neubiorev.2024.105846openalex-snapshot
The multiverse of data preprocessing and analysis in graph-based fMRI: A systematic literature review of analytical choices fed into a decision support tool for informed analysis
inferred← citeshttps://doi.org/10.1016/j.rbmo.2017.04.005openalex-snapshot
What fertility specialists should know about the vaginal microbiome: a review
inferred← citeshttps://doi.org/10.1016/j.rhisph.2026.101488openalex-snapshot
From rhizosphere dialogue to holobiont resilience: The plant–microbiome interface as a model for drought adaptation
inferred← citeshttps://doi.org/10.1016/j.scienta.2023.112627openalex-snapshot
Biomolecule repository of endophytic bacteria from guava serves as a key player in suppressing root- knot nematode, Meloidogyne enterolobii
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2019.04.212openalex-snapshot
Discussion paper: Sustainable increase of crop production through improved technical strategies, breeding and adapted management – A European perspective
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2025.178826openalex-snapshot
Incorporating microbiome analyses can enhance conservation of threatened species and ecosystem functions
inferred← citeshttps://doi.org/10.1016/j.shpsa.2021.10.019openalex-snapshot
Unifying heritability in evolutionary theory
inferred← citeshttps://doi.org/10.1016/j.shpsa.2021.11.005openalex-snapshot
Environmentality in biomedicine: microbiome research and the perspectival body
inferred← citeshttps://doi.org/10.1016/j.shpsc.2020.101323openalex-snapshot
Holobionts: Ecological communities, hybrids, or biological individuals? A metaphysical perspective on multispecies systems
inferred← citeshttps://doi.org/10.1016/j.tim.2019.11.006openalex-snapshot
Networks Consolidate the Core Concepts of Evolution by Natural Selection
inferred← citeshttps://doi.org/10.1016/j.tim.2024.11.011openalex-snapshot
Microbiome selection and evolution within wild and domesticated plants
inferred← citeshttps://doi.org/10.1016/j.tplants.2020.04.015openalex-snapshot
Towards Unraveling Macroecological Patterns in Rhizosphere Microbiomes
inferred← citeshttps://doi.org/10.1016/j.tree.2016.03.006openalex-snapshot
Gut Microbiotas and Host Evolution: Scaling Up Symbiosis
inferred← citeshttps://doi.org/10.1016/j.tree.2018.12.010openalex-snapshot
The Extended Genotype: To What Extent? A Comment on Carthey et al.
inferred← citeshttps://doi.org/10.1016/j.tree.2019.11.004openalex-snapshot
The Reproductive Microbiome: An Emerging Driver of Sexual Selection, Sexual Conflict, Mating Systems, and Reproductive Isolation
inferred← citeshttps://doi.org/10.1016/j.zool.2019.02.007openalex-snapshot
Resolving structure and function of metaorganisms through a holistic framework combining reductionist and integrative approaches
inferred← citeshttps://doi.org/10.1016/s1473-3099(19)30045-3openalex-snapshot
Microbial evolutionary medicine: from theory to clinical practice
inferred← citeshttps://doi.org/10.1017/9781009024297openalex-snapshot
The Metaphysics of Biology
inferred← citeshttps://doi.org/10.1017/9781108881760.012openalex-snapshot
Embryo Transfer
inferred← citeshttps://doi.org/10.1017/can.2024.33openalex-snapshot
What constitutes the health subject?
inferred← citeshttps://doi.org/10.1017/s0024282926101479openalex-snapshot
What is an ‘individual’ in lichen symbioses? An overview of alternative perspectives
inferred← citeshttps://doi.org/10.1017/s0140525x18002133openalex-snapshot
Microbiota-gut-brain research: A critical analysis
inferred← citeshttps://doi.org/10.1038/ismej.2017.66openalex-snapshot
Microbial contributions to the persistence of coral reefs
inferred← citeshttps://doi.org/10.1038/ncomms12151openalex-snapshot
Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
inferred← citeshttps://doi.org/10.1038/ncomms14319openalex-snapshot
Unraveling the processes shaping mammalian gut microbiomes over evolutionary time
inferred← citeshttps://doi.org/10.1038/s41396-018-0251-5openalex-snapshot
Terrestriality and bacterial transfer: a comparative study of gut microbiomes in sympatric Malagasy mammals
inferred← citeshttps://doi.org/10.1038/s41396-020-00856-zopenalex-snapshot
Morphological complexity affects the diversity of marine microbiomes
inferred← citeshttps://doi.org/10.1038/s41396-021-00910-4openalex-snapshot
Interspecies bacterial competition regulates community assembly in the C. elegans intestine
inferred← citeshttps://doi.org/10.1038/s41467-019-10191-3openalex-snapshot
Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades
inferred← citeshttps://doi.org/10.1038/s41467-021-25315-xopenalex-snapshot
The microbiome extends host evolutionary potential
inferred← citeshttps://doi.org/10.1038/s41467-021-25732-yopenalex-snapshot
Captivity and the co-diversification of great ape microbiomes
inferred← citeshttps://doi.org/10.1038/s41467-023-39508-zopenalex-snapshot
Patterns and determinants of the global herbivorous mycobiome
inferred← citeshttps://doi.org/10.1038/s41467-024-52464-6openalex-snapshot
Decoupling of strain- and intrastrain-level interactions of microbiomes in a sponge holobiont
inferred← citeshttps://doi.org/10.1038/s41467-025-61998-2openalex-snapshot
A reconceptualized framework for human microbiome transmission in early life
inferred← citeshttps://doi.org/10.1038/s41522-025-00798-4openalex-snapshot
Honeybee-Gilliamella synergy in carbohydrate metabolism enhances host thermogenesis in cold acclimation
inferred← citeshttps://doi.org/10.1038/s41559-018-0731-zopenalex-snapshot
Coordinated change at the colony level in fruit bat fur microbiomes through time
inferred← citeshttps://doi.org/10.1038/s41559-019-0935-xopenalex-snapshot
Vertical transmission of sponge microbiota is inconsistent and unfaithful
inferred← citeshttps://doi.org/10.1038/s41559-020-01384-xopenalex-snapshot
Ten recent insights for our understanding of cooperation
inferred← citeshttps://doi.org/10.1038/s41559-021-01593-yopenalex-snapshot
Natural selection for imprecise vertical transmission in host–microbiota systems
inferred← citeshttps://doi.org/10.1038/s41559-022-01712-3openalex-snapshot
Cophylogeny and convergence shape holobiont evolution in sponge–microbe symbioses
inferred← citeshttps://doi.org/10.1038/s41559-025-02846-wopenalex-snapshot
Applying evolutionary theory to understand host–microbiome evolution
inferred← citeshttps://doi.org/10.1038/s41564-018-0189-4openalex-snapshot
Defining microbiome function
inferred← citeshttps://doi.org/10.1038/s41564-024-01865-wopenalex-snapshot
Estimates of microbiome heritability across hosts
inferred← citeshttps://doi.org/10.1038/s41576-018-0085-zopenalex-snapshot
A great-ape view of the gut microbiome
inferred← citeshttps://doi.org/10.1038/s41576-021-00421-0openalex-snapshot
Disentangling host–microbiota complexity through hologenomics
inferred← citeshttps://doi.org/10.1038/s41587-026-03213-1openalex-snapshot
A genomic catalog of Earth’s bacterial and archaeal symbionts
inferred← citeshttps://doi.org/10.1038/s41598-018-33545-1openalex-snapshot
Showcasing the role of seawater in bacteria recruitment and microbiome stability in sponges
inferred← citeshttps://doi.org/10.1038/s41598-020-76348-zopenalex-snapshot
Morphology, ultrastructure, genomics, and phylogeny of Euplotes vanleeuwenhoeki sp. nov. and its ultra-reduced endosymbiont “Candidatus Pinguicoccus supinus” sp. nov.
inferred← citeshttps://doi.org/10.1038/s41598-021-00674-zopenalex-snapshot
Soil organic matter is essential for colony growth in subterranean termites
inferred← citeshttps://doi.org/10.1038/s43705-023-00235-7openalex-snapshot
Metatranscriptomic response of the wheat holobiont to decreasing soil water content
inferred← citeshttps://doi.org/10.1038/s44383-026-00038-4openalex-snapshot
Transforming viticulture through genomic innovation and integrated pest management for sustainable grape production
inferred← citeshttps://doi.org/10.1051/medsci/20173312007openalex-snapshot
Évolution des microbiotes intestinaux de mammifères et ses conséquences sur la santé humaine
inferred← citeshttps://doi.org/10.1073/pnas.1612559113openalex-snapshot
High-fat diet modifies the PPAR-γ pathway leading to disruption of microbial and physiological ecosystem in murine small intestine
inferred← citeshttps://doi.org/10.1073/pnas.1702983114openalex-snapshot
Bacteria-mediated hypoxia functions as a signal for mosquito development
inferred← citeshttps://doi.org/10.1073/pnas.1708345114openalex-snapshot
Gut microbiomes and reproductive isolation in Drosophila
inferred← citeshttps://doi.org/10.1073/pnas.1721804115openalex-snapshot
Reply to Rosenberg et al.: Diet, gut bacteria, and assortative mating in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1073/pnas.1722232115openalex-snapshot
Processes and patterns of interaction as units of selection: An introduction to ITSNTS thinking
inferred← citeshttps://doi.org/10.1073/pnas.1909790116openalex-snapshot
The role of multilevel selection in host microbiome evolution
inferred← citeshttps://doi.org/10.1073/pnas.2202538119openalex-snapshot
Community-level evolutionary processes: Linking community genetics with replicator-interactor theory
inferred← citeshttps://doi.org/10.1079/9781800623545.0066openalex-snapshot
Genetics and Genomics of Chalcidoidea
inferred← citeshttps://doi.org/10.1080/03014223.2023.2169943openalex-snapshot
Gnotobiotic experimentation helps define symbiogenesis in vertebrate evolution
inferred← citeshttps://doi.org/10.1080/03014223.2023.2255142openalex-snapshot
Modelling the evolution of holobionts: an incomplete review
inferred← citeshttps://doi.org/10.1080/03014223.2024.2432422openalex-snapshot
Animals in the microbial world ‐ an Aotearoa perspective
inferred← citeshttps://doi.org/10.1080/07352689.2021.1901044openalex-snapshot
An Ecological Insight into the Multifaceted World of Plant-Endophyte Association
inferred← citeshttps://doi.org/10.1086/703582openalex-snapshot
The Conceptual Ecology of the Human Microbiome
inferred← citeshttps://doi.org/10.1086/717679openalex-snapshot
Do Interactions among Microbial Symbionts Cause Selection for Greater Pathogen Virulence?
inferred← citeshttps://doi.org/10.1086/723782openalex-snapshot
Holobiont Evolution: Population Theory for the Hologenome
inferred← citeshttps://doi.org/10.1086/732781openalex-snapshot
Experimental Evolution of a Mammalian Holobiont? Genetic and Maternal Effects on the Cecal Microbiome in Bank Voles Selectively Bred for Herbivorous Capability
inferred← citeshttps://doi.org/10.1093/aesa/saag026openalex-snapshot
Crosstalk in the cold: host–microbe interactions in insect diapause
inferred← citeshttps://doi.org/10.1093/bib/bbz155openalex-snapshot
Current challenges and best-practice protocols for microbiome analysis
inferred← citeshttps://doi.org/10.1093/ee/nvy093openalex-snapshot
Phoresy and Within-colony Transmission of Nematodes Associated with Alates of Subterranean Termites (Isoptera: Rhinotermitidae)
inferred← citeshttps://doi.org/10.1093/ee/nvy152openalex-snapshot
The Termite Fecal Nest: A Framework for the Opportunistic Acquisition of Beneficial Soil Streptomyces (Actinomycetales: Streptomycetaceae)
inferred← citeshttps://doi.org/10.1093/femsec/fiae134openalex-snapshot
Habitat specificity modulates the bacterial biogeographic patterns in the Southern Ocean
inferred← citeshttps://doi.org/10.1093/femsec/fiaf010openalex-snapshot
Distinct bacteria display genus and species-specific associations with mycobionts in paramo lichens in Colombia
inferred← citeshttps://doi.org/10.1093/femsec/fiaf089openalex-snapshot
Within-host microbial selection and multiple microbial generations buffer the loss of host fitness under environmental change
inferred← citeshttps://doi.org/10.1093/femsec/fiy194openalex-snapshot
Prokaryotic communities of Indo-Pacific giant barrel sponges are more strongly influenced by geography than host phylogeny
inferred← citeshttps://doi.org/10.1093/femsle/fnz117openalex-snapshot
Not all animals need a microbiome
inferred← citeshttps://doi.org/10.1093/femsre/fuac034openalex-snapshot
Termite-engineered microbial communities of termite nest structures: a new dimension to the extended phenotype
inferred← citeshttps://doi.org/10.1093/femsre/fuw028openalex-snapshot
Winding paths to simplicity: genome evolution in facultative insect symbionts
inferred← citeshttps://doi.org/10.1093/femsre/fuy003openalex-snapshot
Pathogens, microbiome and the host: emergence of the ecological Koch's postulates
inferred← citeshttps://doi.org/10.1093/gbe/evx175openalex-snapshot
Into the Wild: Parallel Transcriptomics of the Tsetse-Wigglesworthia Mutualism within Kenyan Populations
inferred← citeshttps://doi.org/10.1093/gbe/evy031openalex-snapshot
Microbial Dark Matter Investigations: How Microbial Studies Transform Biological Knowledge and Empirically Sketch a Logic of Scientific Discovery
inferred← citeshttps://doi.org/10.1093/icb/icaf059openalex-snapshot
Through the microbial looking glass: our shifting understanding of the holobiont and microbes as mediators of organismal biology
inferred← citeshttps://doi.org/10.1093/icb/icx020openalex-snapshot
Beyond Fermentation: Other Important Services Provided to Endothermic Herbivores by their Gut Microbiota
inferred← citeshttps://doi.org/10.1093/icb/icx103openalex-snapshot
With a Little Help from My Friends: Microbial Partners in Integrative and Comparative Biology—An Introduction to the Symposium
inferred← citeshttps://doi.org/10.1093/icb/icx104openalex-snapshot
Links between Natural Variation in the Microbiome and Host Fitness in Wild Mammals
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