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Understanding photosynthetic biofilm productivity and structure through 2D simulation

https://doi.org/10.1371/journal.pcbi.1009904
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Mathematical modeling of biofilm structure with a hybrid differential-discrete cellular automaton approach
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Three‐dimensional biofilm model with individual cells and continuum EPS matrix
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Microalgae for oil: Strain selection, induction of lipid synthesis and outdoor mass cultivation in a low‐cost photobioreactor
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Rotating algal biofilm reactor and spool harvester for wastewater treatment with biofuels by‐products
inferredcites →https://doi.org/10.1002/bit.25301openalex-snapshot
Biofilm growth of Chlorella sorokiniana in a rotating biological contactor based photobioreactor
inferredcites →https://doi.org/10.1002/bit.25590openalex-snapshot
Time‐resolved biofilm deformation measurements using optical coherence tomography
inferredcites →https://doi.org/10.1002/ep.11841openalex-snapshot
Evolution, detrimental effects, and removal of oxygen in microalga cultures: A review
inferredcites →https://doi.org/10.1007/s00248-006-9016-1openalex-snapshot
Aeroterrestrial Microalgae Growing in Biofilms on Facades—Response to Temperature and Water Stress
inferredcites →https://doi.org/10.1007/s00253-013-5035-2openalex-snapshot
Comprehensive model of microalgae photosynthesis rate as a function of culture conditions in photobioreactors
inferredcites →https://doi.org/10.1007/s00253-015-6736-5openalex-snapshot
Biofilm-based algal cultivation systems
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A fluid dynamics model of the growth of phototrophic biofilms
inferredcites →https://doi.org/10.1007/s10811-013-0178-1openalex-snapshot
The effect of harvesting on biomass production and nutrient removal in phototrophic biofilm reactors for effluent polishing
inferredcites →https://doi.org/10.1007/s11538-006-9168-7openalex-snapshot
A Multidimensional Multispecies Continuum Model for Heterogeneous Biofilm Development
inferredcites →https://doi.org/10.1016/0304-3800(93)90052-topenalex-snapshot
Dynamic behaviour of a model for photosynthesis and photoinhibition
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Algal biofilm based technology for wastewater treatment
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Modelling neutral lipid production by the microalga Isochrysis aff. galbana under nitrogen limitation
inferredcites →https://doi.org/10.1016/j.biortech.2012.09.100openalex-snapshot
Attached cultivation technology of microalgae for efficient biomass feedstock production
inferredcites →https://doi.org/10.1016/j.biortech.2013.10.016openalex-snapshot
Development of a rotating algal biofilm growth system for attached microalgae growth with in situ biomass harvest
inferredcites →https://doi.org/10.1016/j.biortech.2014.01.001openalex-snapshot
Direct measurement and characterization of active photosynthesis zones inside wastewater remediating and biofuel producing microalgal biofilms
inferredcites →https://doi.org/10.1016/j.biortech.2014.08.052openalex-snapshot
Yearlong evaluation of performance and durability of a pilot-scale Revolving Algal Biofilm (RAB) cultivation system
inferredcites →https://doi.org/10.1016/j.biortech.2016.10.078openalex-snapshot
Development and performance evaluation of an algal biofilm reactor for treatment of multiple wastewaters and characterization of biomass for diverse applications
inferredcites →https://doi.org/10.1016/j.biortech.2017.05.136openalex-snapshot
Biofilm based attached cultivation technology for microalgal biorefineries—A review
inferredcites →https://doi.org/10.1016/j.biotechadv.2016.08.004openalex-snapshot
Overview of microalgal extracellular polymeric substances (EPS) and their applications
inferredcites →https://doi.org/10.1016/j.jbiotec.2009.03.015openalex-snapshot
Microalgae and terrestrial biomass as source for fuels—A process view
inferredcites →https://doi.org/10.1016/j.jclepro.2020.120547openalex-snapshot
Rotating algal biofilm versus planktonic cultivation: LCA perspective
inferredcites →https://doi.org/10.1016/j.jtbi.2017.08.017openalex-snapshot
A time-space model for the growth of microalgae biofilms for biofuel production
inferredcites →https://doi.org/10.1016/j.micron.2013.02.013openalex-snapshot
Realistic representation of Bacillus subtilis biofilms architecture using combined microscopy (CLSM, ESEM and FESEM)
inferredcites →https://doi.org/10.1016/j.mimet.2010.04.006openalex-snapshot
The biofilm architecture of sixty opportunistic pathogens deciphered using a high throughput CLSM method
inferredcites →https://doi.org/10.1016/j.rser.2015.07.090openalex-snapshot
Factors affecting algae biofilm growth and lipid production: A review
inferredcites →https://doi.org/10.1016/j.watres.2007.11.016openalex-snapshot
Stratification in the cohesion of biofilms grown under various environmental conditions
inferredcites →https://doi.org/10.1016/s0022-0981(00)00166-0openalex-snapshot
Exopolysaccharide production by the epipelic diatom Cylindrotheca closterium: effects of nutrient conditions
inferredcites →https://doi.org/10.1016/s0168-6496(00)00068-4openalex-snapshot
Monitoring of oxygenic and anoxygenic photosynthesis in a unicyanobacterial biofilm, grown in benthic gradient chamber
inferredcites →https://doi.org/10.1021/es900705jopenalex-snapshot
Life-Cycle Assessment of Biodiesel Production from Microalgae
inferredcites →https://doi.org/10.1023/a:1020527020464openalex-snapshot
Mathematical modelling of biofilm structures
inferredcites →https://doi.org/10.1038/ismej.2014.105openalex-snapshot
Growth form defines physiological photoprotective capacity in intertidal benthic diatoms
inferredcites →https://doi.org/10.1038/nrmicro.2016.84openalex-snapshot
Spatial structure, cooperation and competition in biofilms
inferredcites →https://doi.org/10.1038/nrmicro1838openalex-snapshot
Physiological heterogeneity in biofilms
inferredcites →https://doi.org/10.1038/nrmicro2415openalex-snapshot
The biofilm matrix
inferredcites →https://doi.org/10.1038/s41467-020-15165-4openalex-snapshot
Dynamics of bacterial population growth in biofilms resemble spatial and structural aspects of urbanization
inferredcites →https://doi.org/10.1038/s41598-021-83523-3openalex-snapshot
Shear stress affects the architecture and cohesion of Chlorella vulgaris biofilms
inferredcites →https://doi.org/10.1046/j.1365-2672.2003.01914.xopenalex-snapshot
Dynamics of living and dead bacterial cells within a mixed-species biofilm during toluene degradation in a biotrickling filter
inferredcites →https://doi.org/10.1051/m2an/2013072openalex-snapshot
A 2D model for hydrodynamics and biology coupling applied to algae growth simulations
inferredcites →https://doi.org/10.1080/08927014.2014.969249openalex-snapshot
Analysis of the mechanical stability and surface detachment of matureStreptococcus mutansbiofilms by applying a range of external shear forces
inferredcites →https://doi.org/10.1093/imammb/21.2.147openalex-snapshot
The role of the biofilm matrix in structural development
inferredcites →https://doi.org/10.1101/335299openalex-snapshot
Photosynthesis under very high oxygen concentrations in dense microbial mats and biofilms
inferredcites →https://doi.org/10.1126/science.1189003openalex-snapshot
An Outlook on Microalgal Biofuels
inferredcites →https://doi.org/10.1137/s0036139900371709openalex-snapshot
Finger Formation in Biofilm Layers
inferredcites →https://doi.org/10.1371/journal.pcbi.1005544openalex-snapshot
BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities
inferredcites →https://doi.org/10.1371/journal.pcbi.1007125openalex-snapshot
NUFEB: A massively parallel simulator for individual-based modelling of microbial communities
inferredcites →https://doi.org/10.1371/journal.pone.0016177openalex-snapshot
The Spatial Architecture of Bacillus subtilis Biofilms Deciphered Using a Surface-Associated Model and In Situ Imaging
inferredcites →https://doi.org/10.1371/journal.pone.0181965openalex-snapshot
A mechanistic Individual-based Model of microbial communities
inferredcites →https://doi.org/10.1557/mrs.2011.71openalex-snapshot
Biofilms as complex fluids
inferredcites →https://doi.org/10.3389/fmicb.2017.00452openalex-snapshot
Radiative Energy Budgets of Phototrophic Surface-Associated Microbial Communities and their Photosynthetic Efficiency Under Diffuse and Collimated Light
inferredcites →https://doi.org/10.3390/microorganisms7090352openalex-snapshot
The Architecture of Monospecific Microalgae Biofilms

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4657320openalex-extracted
Microalgae Biofilms for Nutrient Reclamation from Anaerobic Digestate: A Factorial Analysis of Parameters Influencing Biomass Productivity and Phosphorus Removal
inferred← citeshttps://doi.org/10.1002/bit.28451openalex-snapshot
Experimental and theoretical investigations of rotating algae biofilm reactors (RABRs): Areal productivity, nutrient recovery, and energy efficiency
inferred← citeshttps://doi.org/10.1007/978-981-95-5179-8_15openalex-snapshot
Phyco-based Wastewater Remediation and High-Quality Biofuels Generation: A Green Step Toward Eco-Friendly Energy Production
inferred← citeshttps://doi.org/10.1007/s11538-024-01348-3openalex-snapshot
A Mathematical Model of Diel Activity and Long Time Survival in Phototrophic Mixed-Species Subaerial Biofilms
inferred← citeshttps://doi.org/10.1016/j.algal.2025.104018openalex-snapshot
Illuminating microalgal biofilms using advanced photonic imaging techniques
inferred← citeshttps://doi.org/10.1016/j.algal.2025.104111openalex-snapshot
Photoacclimation strategies in Phaeodactylum tricornutum biofilms
inferred← citeshttps://doi.org/10.1016/j.algal.2025.104201openalex-snapshot
Model guided development of astaxanthin production in microalgae biofilms
inferred← citeshttps://doi.org/10.1016/j.algal.2026.104637openalex-snapshot
Biofilm organization and ECM remodeling in Trebouxia lynniae during colony growth and lichen symbiosis
inferred← citeshttps://doi.org/10.1016/j.apm.2024.04.021openalex-snapshot
Computational modeling of microalgal biofilm growth in heterogeneous rotating algal biofilm reactors (RABRs) for wastewater treatment
inferred← citeshttps://doi.org/10.1016/j.bioflm.2023.100109openalex-snapshot
Migration of surface-associated microbial communities in spaceflight habitats
inferred← citeshttps://doi.org/10.1016/j.cej.2022.141177openalex-snapshot
Experiments and cellular automata simulation reveal light/carbon transportation and growth mechanism of Chlorella vulgaris biofilm in attached cultivation
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Synergy between CO2 and water activity in subaerial biofilms in varying environments
inferred← citeshttps://doi.org/10.1111/mmi.15057openalex-snapshot
Two cyanobacterial response regulators with diguanylate cyclase activity, Rre2 and Rre8, participate in biofilm formation
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The Advancement of Microalgal Cultivation Technology: Current Trends and Future Prospectives
inferred← citeshttps://doi.org/10.2166/wst.2024.367openalex-snapshot
Factorial experiment to identify two-way interactions between temperature, harvesting period, hydraulic retention time, and light intensity that influence the biomass productivity and phosphorus removal efficiency of a microalgae–bacteria biofilm
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Microalgal Biofilms : An Experimental, Monitoring and Modeling Approach
inferred← citeshttps://doi.org/10.70675/68193749zd83cz4e0ezb803zcb2fe456d0e0openalex-snapshot
Optimisation of microalgae biofilms as a future source of biomolecules
inferred← citeshttps://doi.org/10.70675/f7dacb46z6307z4372z85afz44c875a39340openalex-snapshot
Mathematical modeling of mobility and biophysical interactions of trace metals in biofilms
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