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c-di-GMP Turn-Over in Clostridium difficile Is Controlled by a Plethora of Diguanylate Cyclases and Phosphodiesterases

https://doi.org/10.1371/journal.pgen.1002039

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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HmsP, a putative phosphodiesterase, and HmsT, a putative diguanylate cyclase, control Hms‐dependent biofilm formation in Yersinia pestis

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Role of the GGDEF protein family in Salmonella cellulose biosynthesis and biofilm formation

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Beyond antibiotic resistance: integrating conjugative elements of the SXT/R391 family that encode novel diguanylate cyclases participate to c‐di‐GMP signalling in Vibrio cholerae

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Riboswitches in Eubacteria Sense the Second Messenger Cyclic Di-GMP

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Vibrio cholerae VpsT Regulates Matrix Production and Motility by Directly Sensing Cyclic di-GMP

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Contribution of Regulation by the bvg Locus to Respiratory Infection of Mice by Bordetella pertussis

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Role of Cyclic Di-GMP during El Tor Biotype Vibrio cholerae Infection: Characterization of the In Vivo-Induced Cyclic Di-GMP Phosphodiesterase CdpA

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The Staphylococcus aureus GGDEF Domain-Containing Protein, GdpS, Influences Protein A Gene Expression in a Cyclic Diguanylic Acid-Independent Manner

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Cyclic Diguanylate Regulates Vibrio cholerae Virulence Gene Expression

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Catalytic Mechanism of Cyclic Di-GMP-Specific Phosphodiesterase: a Study of the EAL Domain-Containing RocR from Pseudomonas aeruginosa

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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Conserved Virulence-Linked Metabolic Reprogramming in Clostridioides Difficile Identified Through Genome-Scale Metabolic Network Analysis

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Identification of c-di-GMP-Responsive Riboswitches

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Cyclic di-GMP Signaling in Bacillus subtilis

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Horizontal Transfer of Cyclic di-GMP Associated Genes. Theoretical Underpinnings and Future Perspectives

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Clostridioides difficile Biofilm

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Clostridium difficile Biofilm

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Genomic insights into the c-di-GMP signaling and biofilm development in the saprophytic spirochete Leptospira biflexa

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Genomic analysis of cyclic-di-GMP-related genes in rhizobial type strains and functional analysis in Rhizobium etli

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A three-step method for analysing bacterial biofilm formation under continuous medium flow

inferred← citeshttps://doi.org/10.1007/s00294-015-0484-zopenalex-snapshot

Cyclic-di-GMP signaling in the Gram-positive pathogen Clostridium difficile

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Identification and expression profiling of c-di-GMP signaling genes in the probiotic strain Escherichia coli Nissle 1917 during adhesion to the intestinal epithelial cells

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Biofilms of Clostridium species

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Virulence factors of Clostridium difficile and their role during infection

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Regulatory Networks: Linking Toxin Production and Sporulation In Clostridioides Difficile

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Accelerated aerobic granulation using alternating feed loadings: Alginate-like exopolysaccharides

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Modification of a bi-functional diguanylate cyclase-phosphodiesterase to efficiently produce cyclic diguanylate monophosphate

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Clostridium difficile secreted Pro‐Pro endopeptidase PPEP‐1 (ZMP1/CD2830) modulates adhesion through cleavage of the collagen binding protein CD2831

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RNA-based control mechanisms of Clostridium difficile

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Second messenger signaling in Clostridioides difficile

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Clostridioides difficile – phage relationship the RNA way

inferred← citeshttps://doi.org/10.1016/j.micres.2024.127811openalex-snapshot

Cyclic diguanylate differentially regulates the expression of virulence factors and pathogenesis-related phenotypes in Clostridioides difficile

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A comprehensive review on structural attributes of biofilm inhibitors against potential targets

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The cyclic-di-GMP diguanylate cyclase CdgA has a role in biofilm formation and exopolysaccharide production in Azospirillum brasilense

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Inhibiting bacterial biofilm formation by stimulating c-di-GMP regulation using citrus peel extract from Jeju Island

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Effect of susceptibility to enterotoxigenic Escherichia coli F4 and of dietary tryptophan on gut microbiota diversity observed in healthy young pigs

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Role of c-di-GMP in anammox aggregation and systematic analysis of its turnover protein in Candidatus Jettenia caeni

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Cyclic di-GMP: second messenger extraordinaire

inferred← citeshttps://doi.org/10.1038/s41598-019-42000-8openalex-snapshot

Dual role of the colonization factor CD2831 in Clostridium difficile pathogenesis

inferred← citeshttps://doi.org/10.1038/s41598-020-78437-5openalex-snapshot

Extracellular DNA, cell surface proteins and c-di-GMP promote biofilm formation in Clostridioides difficile

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Characterization of a natural triple-tandem c-di-GMP riboswitch and application of the riboswitch-based dual-fluorescence reporter

inferred← citeshttps://doi.org/10.1073/pnas.2103579118openalex-snapshot

An RNA-centric global view of Clostridioides difficile reveals broad activity of Hfq in a clinically important gram-positive bacterium

inferred← citeshttps://doi.org/10.1074/jbc.m115.665091openalex-snapshot

Cyclic diGMP Regulates Production of Sortase Substrates of Clostridium difficile and Their Surface Exposure through ZmpI Protease-mediated Cleavage

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A Novel Secreted Metalloprotease (CD2830) from Clostridium difficile Cleaves Specific Proline Sequences in LPXTG Cell Surface Proteins

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Regulatory transcription factors of Clostridioides difficile pathogenesis with a focus on toxin regulation

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Type IV pili are involved in phenotypes associated with Clostridioides difficile pathogenesis

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Identification of RNAs bound by Hfq reveals widespread RNA partners and a sporulation regulator in the human pathogen Clostridioides difficile

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Phase variation of Clostridium difficile virulence factors

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Cyclic diguanylate signaling in Gram-positive bacteria

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Identification of the Regulatory Components Mediated by the Cyclic di-GMP Receptor Filp and Its Interactor PilZX3 and Functioning in Virulence of Xanthomonas oryzae pv. oryzae

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Global evolutionary dynamics and resistome analysis of Clostridioides difficile ribotype 017

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Insights into the regulatory mechanisms of Clostridioides difficile biofilm formation

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Epigenomic and functional characterization of a core DNA methyltransferase in the human pathogen Clostridium difficile

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Interplay between the cyclic di‐GMP network and the cell–cell signalling components coordinates virulence‐associated functions in Xanthomonas oryzae pv. oryzae

inferred← citeshttps://doi.org/10.1111/1574-6976.12018openalex-snapshot

Regulation of flagellar motility during biofilm formation

inferred← citeshttps://doi.org/10.1111/1751-7915.12378openalex-snapshot

Hyperadherence of Pseudomonas taiwanensis VLB120ΔC increases productivity of ( S )‐styrene oxide formation

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Cyclic di‐GMP, an established secondary messenger still speeding up

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Cyclic diguanylate regulation of Bacillus cereus group biofilm formation

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Covalent attachment and Pro‐Pro endopeptidase (PPEP‐1)‐mediated release of Clostridium difficile cell surface proteins involved in adhesion

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Phase‐variable expression of pdcB , a phosphodiesterase, influences sporulation in Clostridioides difficile

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Regulation of Toxin Production in Clostridium difficile

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Engineering of Bacillus subtilis Strains To Allow Rapid Characterization of Heterologous Diguanylate Cyclases and Phosphodiesterases

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A Nutrient-Regulated Cyclic Diguanylate Phosphodiesterase Controls Clostridium difficile Biofilm and Toxin Production during Stationary Phase

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Cyclic Diguanylate Inversely Regulates Motility and Aggregation in Clostridium difficile

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Cyclic Di-GMP Phosphodiesterases RmdA and RmdB Are Involved in Regulating Colony Morphology and Development in Streptomyces coelicolor

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Functional Characterization of Core Components of the Bacillus subtilis Cyclic-Di-GMP Signaling Pathway

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The agr Locus Regulates Virulence and Colonization Genes in Clostridium difficile 027

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Roles of divalent metals in the regulation of cyclic di-GMP signaling in bacteria

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Regulation of Type IV Pili Contributes to Surface Behaviors of Historical and Epidemic Strains of Clostridium difficile

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The Characterization of a Cyclic-Di-GMP (c-Di-GMP) Pathway Leads to a New Tool for Studying c-Di-GMP Metabolic Genes

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Evidence for Cyclic Di-GMP-Mediated Signaling in Bacillus subtilis

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Pleiotropic Role of the RNA Chaperone Protein Hfq in the Human Pathogen Clostridium difficile

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Cyclic Di-GMP Riboswitch-Regulated Type IV Pili Contribute to Aggregation of Clostridium difficile

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Comparative Genomics of Enterococci: Variation in Enterococcus faecalis, Clade Structure in E. faecium, and Defining Characteristics of E . gallinarum and E . casseliflavus

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Cyclic di-GMP: the First 25 Years of a Universal Bacterial Second Messenger

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Cyclic Diguanylate Regulates Virulence Factor Genes via Multiple Riboswitches in Clostridium difficile

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c-di-GMP Inhibits Early Sporulation in Clostridioides difficile

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Functional diversity of c-di-GMP receptors in prokaryotic and eukaryotic systems

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RstA, a two-component response regulator, plays important roles in multiple virulence-associated processes in enterohemorrhagic Escherichia coli O157:H7

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The conserved noncoding RNA ModT coordinates growth and virulence in Clostridioides difficile

inferred← citeshttps://doi.org/10.1371/journal.pgen.1003493openalex-snapshot

Genome-Wide Identification of Regulatory RNAs in the Human Pathogen Clostridium difficile

inferred← citeshttps://doi.org/10.1371/journal.pgen.1007332openalex-snapshot

Genome-wide detection of conservative site-specific recombination in bacteria

inferred← citeshttps://doi.org/10.1371/journal.pone.0206896openalex-snapshot

Impact of CodY protein on metabolism, sporulation and virulence in Clostridioides difficile ribotype 027

inferred← citeshttps://doi.org/10.1371/journal.ppat.1004301openalex-snapshot

Cyclic di-GMP-dependent Signaling Pathways in the Pathogenic Firmicute Listeria monocytogenes

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Pleiotropic roles of Clostridium difficile sin locus

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Cyclic diguanylate riboswitches control bacterial pathogenesis mechanisms

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Biofilm regulation in Clostridioides difficile: Novel systems linked to hypervirulence

inferred← citeshttps://doi.org/10.1371/journal.ppat.1010677openalex-snapshot

Coordinated modulation of multiple processes through phase variation of a c-di-GMP phosphodiesterase in Clostridioides difficile

inferred← citeshttps://doi.org/10.1371/journal.ppat.1013471openalex-snapshot

Phase variation of Clostridioides difficile colony morphology occurs via modulation of cell division

inferred← citeshttps://doi.org/10.14288/1.0072141openalex-snapshot

Strategy to develop alternative to antibiotics using bacterial second messenger 3’, 5’ cyclic diguanylic acid as an immunostimulator in broiler chicken

inferred← citeshttps://doi.org/10.1517/17460441.2013.770466openalex-snapshot

Novel avenues forClostridium difficileinfection drug discovery

inferred← citeshttps://doi.org/10.15789/2220-7619-roc-18009openalex-snapshot

Regulation of Clostridiodes difficile CRISPR-Cas system by biofilm-associated factors and glucose

inferred← citeshttps://doi.org/10.21769/bioprotoc.3870openalex-snapshot

Assessment of Diadenylate Cyclase and c-di-AMP-phosphodiesterase Activities Using Thin-layer and Ion Exchange Chromatography

inferred← citeshttps://doi.org/10.3382/ps.2013-03143openalex-snapshot

Effect of 3′,5′-cyclic diguanylic acid in a broiler Clostridium perfringens infection model

inferred← citeshttps://doi.org/10.3389/fchem.2020.00264openalex-snapshot

Screening for Diguanylate Cyclase (DGC) Inhibitors Mitigating Bacterial Biofilm Formation

inferred← citeshttps://doi.org/10.3389/fmicb.2014.00282openalex-snapshot

Antibiotics in Canadian poultry productions and anticipated alternatives

inferred← citeshttps://doi.org/10.3389/fmicb.2018.00045openalex-snapshot

c-di-GMP Regulates Various Phenotypes and Insecticidal Activity of Gram-Positive Bacillus thuringiensis

inferred← citeshttps://doi.org/10.3389/fmicb.2018.02084openalex-snapshot

Clostridium difficile Biofilm: Remodeling Metabolism and Cell Surface to Build a Sparse and Heterogeneously Aggregated Architecture

inferred← citeshttps://doi.org/10.3389/fmicb.2021.682111openalex-snapshot

What’s a Biofilm?—How the Choice of the Biofilm Model Impacts the Protein Inventory of Clostridioides difficile

inferred← citeshttps://doi.org/10.3389/fmicb.2022.884528openalex-snapshot

The RNA Chaperone Protein Hfq Regulates the Characteristic Sporulation and Insecticidal Activity of Bacillus thuringiensis

inferred← citeshttps://doi.org/10.3390/antibiotics11091177openalex-snapshot

Bioinformatics and Genomic Analyses of the Suitability of Eight Riboswitches for Antibacterial Drug Targets

inferred← citeshttps://doi.org/10.3390/genes11101209openalex-snapshot

Interplay between Regulatory RNAs and Signal Transduction Systems during Bacterial Infection

inferred← citeshttps://doi.org/10.3390/ijms25073878openalex-snapshot

CdgB Regulates Morphological Differentiation and Toyocamycin Production in Streptomyces diastatochromogenes 1628

inferred← citeshttps://doi.org/10.3390/microorganisms11102525openalex-snapshot

Review of the Impact of Biofilm Formation on Recurrent Clostridioides difficile Infection

inferred← citeshttps://doi.org/10.3390/microorganisms9030495openalex-snapshot

Diguanylate Cyclase GdpX6 with c-di-GMP Binding Activity Involved in the Regulation of Virulence Expression in Xanthomonas oryzae pv. oryzae

inferred← citeshttps://doi.org/10.3390/toxins8050153openalex-snapshot

The Regulatory Networks That Control Clostridium difficile Toxin Synthesis

inferred← citeshttps://doi.org/10.3969/j.issn.1673-4254.2017.05.11openalex-snapshot

[Expression, purification and activity analysis of GGDEF and EAL domain-containing proteins from Lactobacillus acidophilus].

inferred← citeshttps://doi.org/10.53846/goediss-8018openalex-snapshot

Structural and biochemical characterization of c-di-AMP synthesizing enzymes

inferred← citeshttps://doi.org/10.64898/2026.04.22.718763openalex-snapshot

Contact dependent suppression of Clostridioides difficile sporulation by enterococci requires the endocarditis and biofilm associated pilus

inferred← citeshttps://doi.org/10.64898/2026.06.10.731418openalex-snapshot

A family of small proteins links c-di-GMP riboswitch signaling with sporulation in Clostridioides difficile

inferred← citeshttps://doi.org/10.70675/1c664defz9a62z4f8cz9deaz704164628547openalex-snapshot

Structure and Regulation of Exopolysaccharide Secretion Systems in Gram-negative bacteria

inferred← citeshttps://doi.org/10.70675/2b10e4bbz7144z4029z98e5z447f3cd173e3openalex-snapshot

Rôle de l'oxygène et des espèces réactives de l'oxygène dans la physiologie et la virulence de clostridioides difficile

inferred← citeshttps://doi.org/10.70675/430fbe25ze30az4c99z8defz8d76a374d4c5openalex-snapshot

The role of non-coding RNAs (ncRNA) in the pathogenesis of Clostridioides difficile

inferred← citeshttps://doi.org/10.70675/475e57d1z425ez4861z88dfz82af7e51d93eopenalex-snapshot

Characterization of a family of small proteins regulated by second messenger-binding riboswitches in Clostridioides difficile

inferred← citeshttps://doi.org/10.70675/a45112b6z14bbz4179z9cb7z7c4af551325aopenalex-snapshot

The CRISPR-Cas system of human pathogen Clostridium difficile : function and regulation

inferred← citeshttps://doi.org/10.71889/5fylantbak.29860478openalex-snapshot

A Novel Norspermidine Responsive Signaling Pathway in Vibrio Cholerae Affecting Biofilm Formation

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