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The Many Landscapes of Recombination in Drosophila melanogaster

https://doi.org/10.1371/journal.pgen.1002905

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00239-004-0287-1openalex-snapshot

Codon Bias and Noncoding GC Content Correlate Negatively with Recombination Rate on the Drosophila X Chromosome

inferredcites →https://doi.org/10.1007/s00239-006-0142-7openalex-snapshot

Fine-Scale Crossover Rate Heterogeneity in Drosophila pseudoobscura

inferredcites →https://doi.org/10.1007/s00239-009-9250-5openalex-snapshot

Estimation of Fine-Scale Recombination Intensity Variation in the white–echinus Interval of D. melanogaster

inferredcites →https://doi.org/10.1007/s00239-010-9388-1openalex-snapshot

Genetic and Evolutionary Correlates of Fine-Scale Recombination Rate Variation in Drosophila persimilis

inferredcites →https://doi.org/10.1007/s10577-007-1140-3openalex-snapshot

Regulating double-stranded DNA break repair towards crossover or non-crossover during mammalian meiosis

inferredcites →https://doi.org/10.1016/0168-9525(93)90249-hopenalex-snapshot

Requiem for distributive segregation: achiasmate segregation in Drosophila females

inferredcites →https://doi.org/10.1016/b978-0-12-456270-7.50008-4openalex-snapshot

Genetic Analysis of Intragenic Recombination in Drosophila

inferredcites →https://doi.org/10.1016/j.cub.2005.07.065openalex-snapshot

Recombination Enhances Protein Adaptation in Drosophila melanogaster

inferredcites →https://doi.org/10.1016/j.gene.2010.04.015openalex-snapshot

Drosophila melanogaster recombination rate calculator

inferredcites →https://doi.org/10.1016/j.tig.2007.12.001openalex-snapshot

Evolution of protein-coding genes in Drosophila

inferredcites →https://doi.org/10.1016/s0092-8674(01)00416-0openalex-snapshot

Differential Timing and Control of Noncrossover and Crossover Recombination during Meiosis

inferredcites →https://doi.org/10.1016/s0092-8674(01)00430-5openalex-snapshot

The Single-End Invasion

inferredcites →https://doi.org/10.1016/s0168-9525(03)00116-1openalex-snapshot

Biased gene conversion: implications for genome and sex evolution

inferredcites →https://doi.org/10.1017/s0016672300020619openalex-snapshot

Further observations on intragenic recombination inDrosophila melanogaster

inferredcites →https://doi.org/10.1017/s0016672300029074openalex-snapshot

The coalescent process in models with selection, recombination and geographic subdivision

inferredcites →https://doi.org/10.1017/s0016672300033619openalex-snapshot

The effect of recombination on background selection

inferredcites →https://doi.org/10.1017/s0016672300034029openalex-snapshot

Background selection and patterns of genetic diversity inDrosophila melanogaster

inferredcites →https://doi.org/10.1017/s0016672302006067openalex-snapshot

Hill–Robertson interference in Drosophila melanogaster: reply to Marais, Mouchiroud and Duret

inferredcites →https://doi.org/10.1017/s0016672302006079openalex-snapshot

Neutral effect of recombination on base composition in Drosophila

inferredcites →https://doi.org/10.1017/s0016672308009579openalex-snapshot

The hitch-hiking effect of a favourable gene

inferredcites →https://doi.org/10.1038/35072078openalex-snapshot

Meiotic recombination hot spots and cold spots

inferredcites →https://doi.org/10.1038/356519a0openalex-snapshot

Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster

inferredcites →https://doi.org/10.1038/43827openalex-snapshot

Intron size and natural selection

inferredcites →https://doi.org/10.1038/hdy.1976.105openalex-snapshot

An inferred chiasma map of Drosophila melanogaster

inferredcites →https://doi.org/10.1038/nature05049openalex-snapshot

Interference among deleterious mutations favours sex and recombination in finite populations

inferredcites →https://doi.org/10.1038/nature06341openalex-snapshot

Evolution of genes and genomes on the Drosophila phylogeny

inferredcites →https://doi.org/10.1038/nature07135openalex-snapshot

High-resolution mapping of meiotic crossovers and non-crossovers in yeast

inferredcites →https://doi.org/10.1038/nature09715openalex-snapshot

The developmental transcriptome of Drosophila melanogaster

inferredcites →https://doi.org/10.1038/nature10811openalex-snapshot

The Drosophila melanogaster Genetic Reference Panel

inferredcites →https://doi.org/10.1038/ng.1042openalex-snapshot

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel

inferredcites →https://doi.org/10.1038/ng.213openalex-snapshot

A common sequence motif associated with recombination hot spots and genome instability in humans

inferredcites →https://doi.org/10.1038/ng.332openalex-snapshot

Systems genetics of complex traits in Drosophila melanogaster

inferredcites →https://doi.org/10.1038/ng1001-217openalex-snapshot

Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex

inferredcites →https://doi.org/10.1038/ng1164openalex-snapshot

Adaptation shapes patterns of genome evolution on sexual and asexual chromosomes in Drosophila

inferredcites →https://doi.org/10.1038/ng1287openalex-snapshot

Intense and highly localized gene conversion activity in human meiotic crossover hot spots

inferredcites →https://doi.org/10.1038/ng1875openalex-snapshot

Biological function of unannotated transcription during the early development of Drosophila melanogaster

inferredcites →https://doi.org/10.1038/ng990openalex-snapshot

An initiation site for meiotic crossing-over and gene conversion in the mouse

inferredcites →https://doi.org/10.1073/pnas.0610195104openalex-snapshot

A population genetics model with recombination hotspots that are heterogeneous across the population

inferredcites →https://doi.org/10.1073/pnas.0610385104openalex-snapshot

Adaptive genic evolution in the Drosophila genomes

inferredcites →https://doi.org/10.1073/pnas.0801848105openalex-snapshot

Fine-scale mapping of recombination rate in Drosophila refines its correlation to diversity and divergence

inferredcites →https://doi.org/10.1073/pnas.091427698openalex-snapshot

Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes

inferredcites →https://doi.org/10.1073/pnas.12.8.530openalex-snapshot

An Effect of Temperature and Age on Crossing-Over in the First Chromosome of Drosophila Melanogaster

inferredcites →https://doi.org/10.1073/pnas.90.5.1800openalex-snapshot

Lack of correlation between interspecific divergence and intraspecific polymorphism at the suppressor of forked region in Drosophila melanogaster and Drosophila simulans.

inferredcites →https://doi.org/10.1073/pnas.94.15.8058openalex-snapshot

The hotspot conversion paradox and the evolution of meiotic recombination

inferredcites →https://doi.org/10.1073/pnas.96.8.4482openalex-snapshot

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis , Drosophila , and Arabidopsis

inferredcites →https://doi.org/10.1086/323612openalex-snapshot

Gene Conversion and Different Population Histories May Explain the Contrast between Polymorphism and Linkage Disequilibrium Levels

inferredcites →https://doi.org/10.1086/523944openalex-snapshot

Mating Frequency and Inclusive Fitness in Drosophila melanogaster

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btp698openalex-snapshot

Fast and accurate long-read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/genetics/114.2.525openalex-snapshot

THE ORGANIZATION OF GENETIC VARIATION FOR RECOMBINATION IN DROSOPHILA MELANOGASTER

inferredcites →https://doi.org/10.1093/genetics/118.2.261openalex-snapshot

Recombination can initiate and terminate at a large number of sites within the rosy locus of Drosophila melanogaster.

inferredcites →https://doi.org/10.1093/genetics/123.4.887openalex-snapshot

The "hitchhiking effect" revisited.

inferredcites →https://doi.org/10.1093/genetics/129.3.779openalex-snapshot

The effect of DNA sequence polymorphisms on intragenic recombination in the rosy locus of Drosophila melanogaster.

inferredcites →https://doi.org/10.1093/genetics/129.4.1111openalex-snapshot

Lack of polymorphism on the Drosophila fourth chromosome resulting from selection.

inferredcites →https://doi.org/10.1093/genetics/129.4.1147openalex-snapshot

Molecular population genetics of the distal portion of the X chromosome in Drosophila: evidence for genetic hitchhiking of the yellow-achaete region.

inferredcites →https://doi.org/10.1093/genetics/133.3.681openalex-snapshot

Chiasma interference as a function of genetic distance.

inferredcites →https://doi.org/10.1093/genetics/134.3.997openalex-snapshot

Chiasma Interference as a Function of Genetic Distance

inferredcites →https://doi.org/10.1093/genetics/134.4.1289openalex-snapshot

The effect of deleterious mutations on neutral molecular variation.

inferredcites →https://doi.org/10.1093/genetics/137.4.1019openalex-snapshot

Meiotic gene conversion tract length distribution within the rosy locus of Drosophila melanogaster.

inferredcites →https://doi.org/10.1093/genetics/139.3.1201openalex-snapshot

A test of a counting model for chiasma interference.

inferredcites →https://doi.org/10.1093/genetics/140.2.783openalex-snapshot

The hitchhiking effect on the site frequency spectrum of DNA polymorphisms.

inferredcites →https://doi.org/10.1093/genetics/141.4.1573openalex-snapshot

Comparative recombination distances among Zea mays L. inbreds, wide crosses and interspecific hybrids.

inferredcites →https://doi.org/10.1093/genetics/145.2.519openalex-snapshot

The Genealogy of Samples in Models With Selection

inferredcites →https://doi.org/10.1093/genetics/148.3.1397openalex-snapshot

The Effect of Gene Conversion on Intralocus Associations

inferredcites →https://doi.org/10.1093/genetics/151.1.239openalex-snapshot

Natural Selection on Synonymous Sites Is Correlated With Gene Length and Recombination in Drosophila

inferredcites →https://doi.org/10.1093/genetics/151.4.1299openalex-snapshot

The Role of the Mismatch Repair Machinery in Regulating Mitotic and Meiotic Recombination Between Diverged Sequences in Yeast

inferredcites →https://doi.org/10.1093/genetics/155.2.909openalex-snapshot

Genetic Drift in an Infinite Population: The Pseudohitchhiking Model

inferredcites →https://doi.org/10.1093/genetics/155.4.1865openalex-snapshot

When Did the Human Population Size Start Increasing?

inferredcites →https://doi.org/10.1093/genetics/156.4.1837openalex-snapshot

Linkage Disequilibria and the Site Frequency Spectra in the su(s) and su(wa) Regions of the Drosophila melanogaster X Chromosome

inferredcites →https://doi.org/10.1093/genetics/160.2.493openalex-snapshot

Patterns of Genetic Variation at a Chromosome 4 Locus of Drosophila melanogaster and D. simulans

inferredcites →https://doi.org/10.1093/genetics/160.2.595openalex-snapshot

Interactions Between Natural Selection, Recombination and Gene Density in the Genes of Drosophila

inferredcites →https://doi.org/10.1093/genetics/161.1.389openalex-snapshot

Population, Evolutionary and Genomic Consequences of Interference Selection

inferredcites →https://doi.org/10.1093/genetics/162.1.297openalex-snapshot

Genetic Control of Mammalian Meiotic Recombination. I. Variation in Exchange Frequencies Among Males From Inbred Mouse Strains

inferredcites →https://doi.org/10.1093/genetics/165.3.1195openalex-snapshot

Recombination, Dominance and Selection on Amino Acid Polymorphism in the Drosophila Genome: Contrasting Patterns on the X and Fourth Chromosomes

inferredcites →https://doi.org/10.1093/genetics/26.5.506openalex-snapshot

A RELATION BETWEEN LARVAL NUTRITION AND THE FREQUENCY OF CROSSING OVER IN THE THIRD CHROMOSOME OF DROSOPHILA MELANOGASTER

inferredcites →https://doi.org/10.1093/genetics/53.3.593openalex-snapshot

DELAYED MATING AND THE RELATIONSHIP OF RECOMBINATION TO MATERNAL AGE IN DROSOPHILA MELANOGASTER

inferredcites →https://doi.org/10.1093/genetics/69.1.71openalex-snapshot

MODIFICATION OF RECOMBINATION FREQUENCY IN DROSOPHILA. I. SELECTION FOR INCREASED AND DECREASED CROSSING OVER

inferredcites →https://doi.org/10.1093/genetics/69.1.85openalex-snapshot

MODIFICATION OF RECOMBINATION FREQUENCY IN DROSOPHILA. II. THE POLYGENIC CONTROL OF CROSSING OVER

inferredcites →https://doi.org/10.1093/genetics/70.3.433openalex-snapshot

GENETIC CHANGE OF RECOMBINATION VALUE IN DROSOPHILA MELANOGASTER. II. SIMULATED NATURAL SELECTION

inferredcites →https://doi.org/10.1093/genetics/76.3.447openalex-snapshot

SELECTION FOR REDUCED CROSSING OVER IN DROSOPHILA MELANOGASTER

inferredcites →https://doi.org/10.1093/genetics/78.2.737openalex-snapshot

THE EVOLUTIONARY ADVANTAGE OF RECOMBINATION

inferredcites →https://doi.org/10.1093/hmg/ddl063openalex-snapshot

Polymorphism in the activity of human crossover hotspots independent of local DNA sequence variation

inferredcites →https://doi.org/10.1093/molbev/msi122openalex-snapshot

Evolution of Proteins and Gene Expression Levels are Coupled in Drosophila and are Independently Associated with mRNA Abundance, Protein Length, and Number of Protein-Protein Interactions

inferredcites →https://doi.org/10.1093/molbev/msp291openalex-snapshot

Recombination Yet Inefficient Selection along the Drosophila melanogaster Subgroup's Fourth Chromosome

inferredcites →https://doi.org/10.1093/nar/gkp335openalex-snapshot

MEME SUITE: tools for motif discovery and searching

inferredcites →https://doi.org/10.1093/oxfordjournals.jhered.a111187openalex-snapshot

An Advantage of Sexual Reproduction in a Rapidly Changing Environment

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004203openalex-snapshot

Hill-Robertson Interference is a Minor Determinant of Variations in Codon Bias Across Drosophila melanogaster and Caenorhabditis elegans Genomes

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040074openalex-snapshot

Reduced natural selection associated with low recombination in Drosophila melanogaster.

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040213openalex-snapshot

Evolution at the tip and base of the X chromosome in an African population of Drosophila melanogaster.

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040576openalex-snapshot

Lineage effects and the index of dispersion of molecular evolution.

inferredcites →https://doi.org/10.1093/schbul/syp004openalex-snapshot

Coalescent Theory: An Introduction

inferredcites →https://doi.org/10.1098/rstb.2009.0320openalex-snapshot

Mutation and the evolution of recombination

inferredcites →https://doi.org/10.1101/gr.104331.109openalex-snapshot

Natural selection shapes nucleotide polymorphism across the genome of the nematode Caenorhabditis briggsae

inferredcites →https://doi.org/10.1101/gr.107854.110openalex-snapshot

The Drosophila melanogaster transcriptome by paired-end RNA sequencing

inferredcites →https://doi.org/10.1101/gr.111252.110openalex-snapshot

Extensive recombination rate variation in the house mouse species complex inferred from genetic linkage maps

inferredcites →https://doi.org/10.1101/gr.6691007openalex-snapshot

Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome

inferredcites →https://doi.org/10.1101/sqb.2009.74.015openalex-snapshot

Genetic Recombination and Molecular Evolution

inferredcites →https://doi.org/10.1101/sqb.2009.74.030openalex-snapshot

Why Sex and Recombination?

inferredcites →https://doi.org/10.1126/science.1064521openalex-snapshot

Nucleotide Variation Along the Drosophila melanogaster Fourth Chromosome

inferredcites →https://doi.org/10.1126/science.1117196openalex-snapshot

A Fine-Scale Map of Recombination Rates and Hotspots Across the Human Genome

inferredcites →https://doi.org/10.1126/science.1151851openalex-snapshot

High-Resolution Mapping of Crossovers Reveals Extensive Variation in Fine-Scale Recombination Patterns Among Humans

inferredcites →https://doi.org/10.1126/science.1181495openalex-snapshot

Prdm9 Controls Activation of Mammalian Recombination Hotspots

inferredcites →https://doi.org/10.1126/science.1183439openalex-snapshot

PRDM9 Is a Major Determinant of Meiotic Recombination Hotspots in Humans and Mice

inferredcites →https://doi.org/10.1126/science.1194208openalex-snapshot

Selection at Linked Sites Shapes Heritable Phenotypic Variation in C. elegans

inferredcites →https://doi.org/10.1126/science.281.5385.1986openalex-snapshot

Why Sex and Recombination?

inferredcites →https://doi.org/10.1126/science.287.5461.2185openalex-snapshot

The Genome Sequence of Drosophila melanogaster

inferredcites →https://doi.org/10.1128/mcb.10.2.785openalex-snapshot

The Z-DNA motif d(TG)30 promotes reception of information during gene conversion events while stimulating homologous recombination in human cells in culture.

inferredcites →https://doi.org/10.1146/annurev.genet.36.041102.113929openalex-snapshot

Meiotic Recombination and Chromosome Segregation in Drosophila Females

inferredcites →https://doi.org/10.1186/1471-2148-7-235openalex-snapshot

Recombination rate and protein evolution in yeast

inferredcites →https://doi.org/10.1186/1471-2164-11-8openalex-snapshot

Detecting positive selection from genome scans of linkage disequilibrium

inferredcites →https://doi.org/10.1186/gb-2006-7-7-r53openalex-snapshot

Comparative genomics of Drosophila and human core promoters

inferredcites →https://doi.org/10.1186/gb-2007-8-2-r18openalex-snapshot

Reduced efficacy of selection in regions of the Drosophila genome that lack crossing over

inferredcites →https://doi.org/10.1186/gb-2010-11-s1-i11openalex-snapshot

The developmental transcriptome of Drosophila melanogaster

inferredcites →https://doi.org/10.1242/jcs.00614openalex-snapshot

Relationship of DNA double-strand breaks to synapsis in Drosophila

inferredcites →https://doi.org/10.1371/journal.pbio.0030196openalex-snapshot

The Pattern of Polymorphism in Arabidopsis thaliana

inferredcites →https://doi.org/10.1371/journal.pbio.0050310openalex-snapshot

Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans

inferredcites →https://doi.org/10.1371/journal.pbio.1000026openalex-snapshot

Hotspots of Biased Nucleotide Substitutions in Human Genes

inferredcites →https://doi.org/10.1371/journal.pbio.1000035openalex-snapshot

Genome-Wide Control of the Distribution of Meiotic Recombination

inferredcites →https://doi.org/10.1371/journal.pgen.0020144openalex-snapshot

A High-Resolution Map of Arabidopsis Recombinant Inbred Lines by Whole-Genome Exon Array Hybridization

inferredcites →https://doi.org/10.1371/journal.pgen.0020200openalex-snapshot

Temporal Analysis of Meiotic DNA Double-Strand Break Formation and Repair in Drosophila Females

inferredcites →https://doi.org/10.1371/journal.pgen.0030035openalex-snapshot

Live Hot, Die Young: Transmission Distortion in Recombination Hotspots

inferredcites →https://doi.org/10.1371/journal.pgen.0030100openalex-snapshot

Cis- and Trans-Acting Elements Regulate the Mouse Psmb9 Meiotic Recombination Hotspot

inferredcites →https://doi.org/10.1371/journal.pgen.1000071openalex-snapshot

The Impact of Recombination on Nucleotide Substitutions in the Human Genome

inferredcites →https://doi.org/10.1371/journal.pgen.1000119openalex-snapshot

The Recombinational Anatomy of a Mouse Chromosome

inferredcites →https://doi.org/10.1371/journal.pgen.1000419openalex-snapshot

Recombinational Landscape and Population Genomics of Caenorhabditis elegans

inferredcites →https://doi.org/10.1371/journal.pgen.1000495openalex-snapshot

Pervasive Natural Selection in the Drosophila Genome?

inferredcites →https://doi.org/10.1371/journal.pgen.1001302openalex-snapshot

Pervasive Adaptive Protein Evolution Apparent in Diversity Patterns around Amino Acid Substitutions in Drosophila simulans

inferredcites →https://doi.org/10.1371/journal.pgen.1002305openalex-snapshot

Genome-Wide Analysis of Heteroduplex DNA in Mismatch Repair–Deficient Yeast Cells Reveals Novel Properties of Meiotic Recombination Pathways

inferredcites →https://doi.org/10.1534/g3.111.001396openalex-snapshot

A Whole-Chromosome Analysis of Meiotic Recombination inDrosophila melanogaster

inferredcites →https://doi.org/10.1534/genetics.103.025387openalex-snapshot

Linkage Disequilibrium as a Signature of Selective Sweeps

inferredcites →https://doi.org/10.1534/genetics.104.027789openalex-snapshot

Does Crossover Interference Count in Saccharomyces cerevisiae?

inferredcites →https://doi.org/10.1534/genetics.104.032821openalex-snapshot

Evolution of Recombination Due to Random Drift

inferredcites →https://doi.org/10.1534/genetics.104.039982openalex-snapshot

Selection for Recombination in Structured Populations

inferredcites →https://doi.org/10.1534/genetics.105.046524openalex-snapshot

GC-Biased Segregation of Noncoding Polymorphisms in Drosophila

inferredcites →https://doi.org/10.1534/genetics.105.049270openalex-snapshot

Effects of trans -acting Genetic Modifiers on Meiotic Recombination Across the a1–sh2 Interval of Maize

inferredcites →https://doi.org/10.1534/genetics.106.058586openalex-snapshot

The Hill–Robertson Effect and the Evolution of Recombination

inferredcites →https://doi.org/10.1534/genetics.106.065557openalex-snapshot

Background Selection in Single Genes May Explain Patterns of Codon Bias

inferredcites →https://doi.org/10.1534/genetics.107.078907openalex-snapshot

Estimating Meiotic Gene Conversion Rates From Population Genetic Data

inferredcites →https://doi.org/10.1534/genetics.107.080622openalex-snapshot

Using Crossover Breakpoints in Recombinant Inbred Lines to Identify Quantitative Trait Loci Controlling the Global Recombination Frequency

inferredcites →https://doi.org/10.1534/genetics.108.090233openalex-snapshot

Sequence Divergence Impedes Crossover More Than Noncrossover Events During Mitotic Gap Repair in Yeast

inferredcites →https://doi.org/10.1534/genetics.111.130195openalex-snapshot

Bayesian Population Genomic Inference of Crossing Over and Gene Conversion

inferredcites →https://doi.org/10.1554/05-273.1openalex-snapshot

THE SIGNATURE OF POSITIVE SELECTION ON STANDING GENETIC VARIATION

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Targeted recombination of homologous chromosomes using CRISPR‐Cas9

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The search for sexually antagonistic genes: Practical insights from studies of local adaptation and statistical genomics

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Acetylcholine esterase of Drosophila melanogaster: a laboratory model to explore insecticide susceptibility gene drives

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Population Genomics on the Fly: Recent Advances in Drosophila

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A Comparison of Multiple Genome-Wide Recombination Maps in Apis mellifera

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Local variation in recombination rates of the honey bee (Apis mellifera) genome among samples from six disparate populations

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Recent and Long-Term Selection Across Synonymous Sites in Drosophila ananassae

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Concurrent Duplication of Drosophila Cid and Cenp-C Genes Resulted in Accelerated Evolution and Male Germline-Biased Expression of the New Copies

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A Continuum of Evolving De Novo Genes Drives Protein-Coding Novelty in Drosophila

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High-resolution linkage map for two honeybee chromosomes: the hotspot quest

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Avian ecological epigenetics: pitfalls and promises

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Meiotic crossover interference: Methods of analysis and mechanisms of action

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Emerging mechanisms and roles of meiotic crossover repression at centromeres

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Biased Gene Conversion Skews Allele Frequencies in Human Populations, Increasing the Disease Burden of Recessive Alleles

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Robustness and the evolution of length control strategies in the T3SS and flagellar hook

inferred← citeshttps://doi.org/10.1016/j.cj.2022.07.008openalex-snapshot

Genome-wide recombination variation in biparental segregating and reciprocal backcross populations provides information for introgression breeding in Brassica napus

inferred← citeshttps://doi.org/10.1016/j.csbj.2019.03.001openalex-snapshot

Evolution of Genomic Base Composition: From Single Cell Microbes to Multicellular Animals

inferred← citeshttps://doi.org/10.1016/j.cub.2015.11.049openalex-snapshot

Evidence that Environmental Heterogeneity Maintains a Detoxifying Enzyme Polymorphism in Drosophila melanogaster

inferred← citeshttps://doi.org/10.1016/j.cub.2015.11.063openalex-snapshot

Convergent Balancing Selection on an Antimicrobial Peptide in Drosophila

inferred← citeshttps://doi.org/10.1016/j.cub.2016.07.016openalex-snapshot

The pdm3 Locus Is a Hotspot for Recurrent Evolution of Female-Limited Color Dimorphism in Drosophila

inferred← citeshttps://doi.org/10.1016/j.cub.2016.10.055openalex-snapshot

Bloom Syndrome Helicase Promotes Meiotic Crossover Patterning and Homolog Disjunction

inferred← citeshttps://doi.org/10.1016/j.cub.2016.11.002openalex-snapshot

Meiotic Recombination: Taking the Path Less Traveled

inferred← citeshttps://doi.org/10.1016/j.cub.2018.07.005openalex-snapshot

A Maladaptive Combination of Traits Contributes to the Maintenance of a Drosophila Hybrid Zone

inferred← citeshttps://doi.org/10.1016/j.cub.2019.10.047openalex-snapshot

Patterns of Genetic Variability in Genomic Regions with Low Rates of Recombination

inferred← citeshttps://doi.org/10.1016/j.cub.2020.03.053openalex-snapshot

Natural Selection Shapes Variation in Genome-wide Recombination Rate in Drosophila pseudoobscura

inferred← citeshttps://doi.org/10.1016/j.gde.2017.07.014openalex-snapshot

Beyond speciation genes: an overview of genome stability in evolution and speciation

inferred← citeshttps://doi.org/10.1016/j.jgg.2023.09.013openalex-snapshot

The genome-wide meiotic recombination landscape in ciliates and its implications for crossover regulation and genome evolution

inferred← citeshttps://doi.org/10.1016/j.jtbi.2015.02.012openalex-snapshot

Phenotypic plasticity, the Baldwin effect, and the speeding up of evolution: The computational roots of an illusion

inferred← citeshttps://doi.org/10.1016/j.jtbi.2017.09.021openalex-snapshot

Evaluating genetic drift in time-series evolutionary analysis

inferred← citeshttps://doi.org/10.1016/j.pbi.2016.02.003openalex-snapshot

Meiotic recombination and genome evolution in plants

inferred← citeshttps://doi.org/10.1016/j.psj.2026.107789openalex-snapshot

High‑resolution recombination landscape in Iranian native chicken ecotypes: Elevated hotspot density and candidate genes for heat and drought adaptation

inferred← citeshttps://doi.org/10.1016/j.semcdb.2016.01.042openalex-snapshot

Repression of harmful meiotic recombination in centromeric regions

inferred← citeshttps://doi.org/10.1016/j.tig.2017.03.003openalex-snapshot

Variation in Recombination Rate: Adaptive or Not?

inferred← citeshttps://doi.org/10.1016/j.tig.2019.02.002openalex-snapshot

Diversity and Determinants of Meiotic Recombination Landscapes

inferred← citeshttps://doi.org/10.1016/j.tpb.2015.04.001openalex-snapshot

Enhancing the mathematical properties of new haplotype homozygosity statistics for the detection of selective sweeps

inferred← citeshttps://doi.org/10.1016/j.zool.2016.03.004openalex-snapshot

Balancing selection on immunity genes: review of the current literature and new analysis in Drosophila melanogaster

inferred← citeshttps://doi.org/10.1038/hdy.2014.80openalex-snapshot

The effects of purifying selection on patterns of genetic differentiation between Drosophila melanogaster populations

inferred← citeshttps://doi.org/10.1038/nrg.2016.133openalex-snapshot

Making sense of genomic islands of differentiation in light of speciation

inferred← citeshttps://doi.org/10.1038/nrg3368openalex-snapshot

New layers to recombination patterns

inferred← citeshttps://doi.org/10.1038/nrg3425openalex-snapshot

Genomic signatures of selection at linked sites: unifying the disparity among species

inferred← citeshttps://doi.org/10.1038/s41437-017-0043-0openalex-snapshot

Effect of genetic architecture on the prediction accuracy of quantitative traits in samples of unrelated individuals

inferred← citeshttps://doi.org/10.1038/s41437-021-00449-2openalex-snapshot

Seasonal changes in recombination characteristics in a natural population of Drosophila melanogaster

inferred← citeshttps://doi.org/10.1038/s41437-022-00523-3openalex-snapshot

Gene conversion: a non-Mendelian process integral to meiotic recombination

inferred← citeshttps://doi.org/10.1038/s41467-019-10413-8openalex-snapshot

Survival of the simplest in microbial evolution

inferred← citeshttps://doi.org/10.1038/s41467-019-12210-9openalex-snapshot

Genome-wide recombination map construction from single individuals using linked-read sequencing

inferred← citeshttps://doi.org/10.1038/s41467-022-29518-8openalex-snapshot

Population-scale long-read sequencing uncovers transposable elements associated with gene expression variation and adaptive signatures in Drosophila

inferred← citeshttps://doi.org/10.1038/s41559-017-0372-7openalex-snapshot

Tetrad analysis in plants and fungi finds large differences in gene conversion rates but no GC bias

inferred← citeshttps://doi.org/10.1038/s41596-021-00646-7openalex-snapshot

Applications of and considerations for using CRISPR–Cas9-mediated gene conversion systems in rodents

inferred← citeshttps://doi.org/10.1038/s41598-020-79720-1openalex-snapshot

Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster

inferred← citeshttps://doi.org/10.1038/s41598-022-15563-2openalex-snapshot

The evaluation of Bcftools mpileup and GATK HaplotypeCaller for variant calling in non-human species

inferred← citeshttps://doi.org/10.1038/s41598-026-37622-8openalex-snapshot

A genome-structure adaptive framework for ROH-based inbreeding estimation in Penaeus vannamei

inferred← citeshttps://doi.org/10.1073/pnas.1309697110openalex-snapshot

Coalescence and genetic diversity in sexual populations under selection

inferred← citeshttps://doi.org/10.1073/pnas.1319032110openalex-snapshot

Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing

inferred← citeshttps://doi.org/10.1073/pnas.1619434114openalex-snapshot

Estimating the parameters of background selection and selective sweeps in Drosophila in the presence of gene conversion

inferred← citeshttps://doi.org/10.1073/pnas.1619508114openalex-snapshot

Determining the factors driving selective effects of new nonsynonymous mutations

inferred← citeshttps://doi.org/10.1073/pnas.1817482116openalex-snapshot

A rigorous measure of genome-wide genetic shuffling that takes into account crossover positions and Mendel’s second law

inferred← citeshttps://doi.org/10.1073/pnas.1821436116openalex-snapshot

Quasi-Mendelian paternal inheritance of mitochondrial DNA: A notorious artifact, or anticipated behavior?

inferred← citeshttps://doi.org/10.1073/pnas.1907787116openalex-snapshot

Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster

inferred← citeshttps://doi.org/10.1073/pnas.2022805118openalex-snapshot

A simple expression for the strength of selection on recombination generated by interference among mutations

inferred← citeshttps://doi.org/10.1073/pnas.2122179119openalex-snapshot

Assortative mating enhances postzygotic barriers to gene flow via ancestry bundling

inferred← citeshttps://doi.org/10.1073/pnas.2427312122openalex-snapshot

Polymorphic transposable elements contribute to variation in recombination landscapes

inferred← citeshttps://doi.org/10.1073/pnas.2518358123openalex-snapshot

Early life-stage thermal resilience is determined by climate-linked regulatory variation

inferred← citeshttps://doi.org/10.1080/15384101.2015.1093709openalex-snapshot

Meiotic DSB patterning: A multifaceted process

inferred← citeshttps://doi.org/10.1080/19336934.2017.1321181openalex-snapshot

The absence of crossovers on chromosome 4 in Drosophila melanogaster : Imperfection or interesting exception?

inferred← citeshttps://doi.org/10.1086/684583openalex-snapshot

Hybrid Incompatibilities, Local Adaptation, and the Genomic Distribution of Natural Introgression between Species

inferred← citeshttps://doi.org/10.1086/743269openalex-snapshot

Stabilizing selection generates selection against introgressed DNA

inferred← citeshttps://doi.org/10.1093/bib/bby064openalex-snapshot

Sequencing era methods for identifying signatures of selection in the genome

inferred← citeshttps://doi.org/10.1093/bioinformatics/btx301openalex-snapshot

PopFly: the Drosophila population genomics browser

inferred← citeshttps://doi.org/10.1093/evlett/qraf031openalex-snapshot

Variation in the resource environment affects patterns of seasonal adaptation at phenotypic and genomic levels in Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/evolut/qpac013openalex-snapshot

The efficacy of selection may increase or decrease with selfing depending upon the recombination environment

inferred← citeshttps://doi.org/10.1093/evolut/qpad017openalex-snapshot

P-element invasion fuels molecular adaptation in laboratory populations of Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/evolut/qpad021openalex-snapshot

Recombination and selection against introgressed DNA

inferred← citeshttps://doi.org/10.1093/evolut/qpad120openalex-snapshot

Evaluating power to detect recurrent selective sweeps under increasingly realistic evolutionary null models

inferred← citeshttps://doi.org/10.1093/evolut/qpad131openalex-snapshot

Evolution under a model of functionally buffered deleterious mutations can lead to positive selection in protein-coding genes

inferred← citeshttps://doi.org/10.1093/evolut/qpad231openalex-snapshot

Polygenic response of sex chromosomes to sexual antagonism

inferred← citeshttps://doi.org/10.1093/evolut/qpae071openalex-snapshot

Sexually discordant selection is associated with trait-specific morphological changes and a complex genomic response

inferred← citeshttps://doi.org/10.1093/evolut/qpaf096openalex-snapshot

Testing for age- and sex-specific mitonuclear epistasis in Drosophila

inferred← citeshttps://doi.org/10.1093/g3journal/jkab062openalex-snapshot

Accurate, ultra-low coverage genome reconstruction and association studies in Hybrid Swarm mapping populations

inferred← citeshttps://doi.org/10.1093/g3journal/jkab197openalex-snapshot

Molecular population genetics of Sex-lethal ( Sxl ) in the Drosophila melanogaster species group: a locus that genetically interacts with Wolbachia pipientis in Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/g3journal/jkab240openalex-snapshot

Evidence for a force favoring GC over AT at short intronic sites in Drosophila simulans and Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/g3journal/jkab343openalex-snapshot

Population genomics of Drosophila suzukii reveal longitudinal population structure and signals of migrations in and out of the continental United States

inferred← citeshttps://doi.org/10.1093/g3journal/jkac206openalex-snapshot

impMKT: the imputed McDonald and Kreitman test, a straightforward correction that significantly increases the evidence of positive selection of the McDonald and Kreitman test at the gene level

inferred← citeshttps://doi.org/10.1093/g3journal/jkac208openalex-snapshot

Variation in fine-scale recombination rate in temperature-evolved Drosophila melanogaster populations in response to selection

inferred← citeshttps://doi.org/10.1093/g3journal/jkac236openalex-snapshot

Gene flow biases population genetic inference of recombination rate

inferred← citeshttps://doi.org/10.1093/g3journal/jkad075openalex-snapshot

Recombination hotspots in soybean [ Glycine max (L.) Merr.]

inferred← citeshttps://doi.org/10.1093/g3journal/jkae069openalex-snapshot

Temporal challenges in detecting balancing selection from population genomic data

inferred← citeshttps://doi.org/10.1093/g3journal/jkaf051openalex-snapshot

Recombinant inbred line panels inform the genetic architecture and interactions of adaptive traits in Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/g3journal/jkaf189openalex-snapshot

High-quality genome assembly of Chironomus riparius and its population history in European populations

inferred← citeshttps://doi.org/10.1093/g3journal/jkag019openalex-snapshot

Meiotic double-strand DNA breaks and spontaneous mutation in Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/g3journal/jkag095openalex-snapshot

Non-uniform chromosomal SNP density biases sites of meiotic crossovers in Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/g3journal/jkag252openalex-snapshot

Seasonal fluctuations in fitness result in severe reductions in effective population size

inferred← citeshttps://doi.org/10.1093/gbe/evaa046openalex-snapshot

A-to-I RNA Editing Uncovers Hidden Signals of Adaptive Genome Evolution in Animals

inferred← citeshttps://doi.org/10.1093/gbe/evaa105openalex-snapshot

Performance of A Priori and A Posteriori Calibration Strategies in Divergence Time Estimation

inferred← citeshttps://doi.org/10.1093/gbe/evaa252openalex-snapshot

Genomics of Recombination Rate Variation in Temperature-EvolvedDrosophila melanogasterPopulations

inferred← citeshttps://doi.org/10.1093/gbe/evab239openalex-snapshot

Highly Parallel Genomic Selection Response in Replicated Drosophila melanogaster Populations with Reduced Genetic Variation

inferred← citeshttps://doi.org/10.1093/gbe/evac040openalex-snapshot

High-Resolution Estimates of Crossover and Noncrossover Recombination from a Captive Baboon Colony

inferred← citeshttps://doi.org/10.1093/gbe/evac096openalex-snapshot

How Can We Resolve Lewontin’s Paradox?

inferred← citeshttps://doi.org/10.1093/gbe/evac143openalex-snapshot

Maximum SNP FST Outperforms Full-Window Statistics for Detecting Soft Sweeps in Local Adaptation

inferred← citeshttps://doi.org/10.1093/gbe/evac145openalex-snapshot

The Linkage-Disequilibrium and Recombinational Landscape in Daphnia pulex

inferred← citeshttps://doi.org/10.1093/gbe/evad223openalex-snapshot

Novel Insights into the Landscape of Crossover and Noncrossover Events in Rhesus Macaques ( Macaca mulatta )

inferred← citeshttps://doi.org/10.1093/gbe/evae004openalex-snapshot

The Effects of Mutation and Recombination Rate Heterogeneity on the Inference of Demography and the Distribution of Fitness Effects

inferred← citeshttps://doi.org/10.1093/gbe/evaf072openalex-snapshot

A Pedigree-Based Map of Crossovers and Noncrossovers in Aye-Ayes ( Daubentonia madagascariensis )

inferred← citeshttps://doi.org/10.1093/gbe/evaf080openalex-snapshot

The Precision and Power of Population Branch Statistics in Identifying the Genomic Signatures of Local Adaptation

inferred← citeshttps://doi.org/10.1093/gbe/evaf097openalex-snapshot

Parameter Scaling in Population Genetics Simulations may Introduce Unintended Background Selection: Considerations for Scaled Simulation Design

inferred← citeshttps://doi.org/10.1093/gbe/evaf158openalex-snapshot

Evolutionary Consequences of Unusually Large Pericentric TE-rich Regions in the Genome of a Neotropical Fig Wasp

inferred← citeshttps://doi.org/10.1093/gbe/evag186openalex-snapshot

Sex-Specific Landscapes of Crossover and Noncrossover Recombination in Coppery Titi Monkeys ( Plecturocebus cupreus )

inferred← citeshttps://doi.org/10.1093/gbe/evag259openalex-snapshot

Is faster-X adaptation due to large-effect mutations? An empirical test of a new theory

inferred← citeshttps://doi.org/10.1093/gbe/evt158openalex-snapshot

Uncovering the Functional Constraints Underlying the Genomic Organization of the Odorant-Binding Protein Genes

inferred← citeshttps://doi.org/10.1093/gbe/evu002openalex-snapshot

Insights into the Preservation of the Homomorphic Sex-Determining Chromosome of Aedes aegypti from the Discovery of a Male-Biased Gene Tightly Linked to the M-Locus

inferred← citeshttps://doi.org/10.1093/gbe/evu100openalex-snapshot

Weak Negative and Positive Selection and the Drift Load at Splice Sites

inferred← citeshttps://doi.org/10.1093/gbe/evv182openalex-snapshot

Recombining without Hotspots: A Comprehensive Evolutionary Portrait of Recombination in Two Closely Related Species of Drosophila

inferred← citeshttps://doi.org/10.1093/gbe/evv207openalex-snapshot

Molecular Evolution ofDrosophilaGermline Stem Cell and Neural Stem Cell Regulating Genes

inferred← citeshttps://doi.org/10.1093/gbe/evw181openalex-snapshot

Predictive Models of Recombination Rate Variation across theDrosophila melanogasterGenome

inferred← citeshttps://doi.org/10.1093/gbe/evw269openalex-snapshot

A New Metazoan Recombination Rate Record and Consistently High Recombination Rates in the Honey Bee Genus Apis Accompanied by Frequent Inversions but not Translocations

inferred← citeshttps://doi.org/10.1093/gbe/evw291openalex-snapshot

Variation in the intensity of selection on codon bias over time causes contrasting patterns of base composition evolution in Drosophila

inferred← citeshttps://doi.org/10.1093/gbe/evx050openalex-snapshot

Genome-Wide Estimates of Transposable Element Insertion and Deletion Rates in Drosophila Melanogaster

inferred← citeshttps://doi.org/10.1093/gbe/evx178openalex-snapshot

MareyMap Online: A User-Friendly Web Application and Database Service for Estimating Recombination Rates Using Physical and Genetic Maps

inferred← citeshttps://doi.org/10.1093/gbe/evy142openalex-snapshot

Impacts of Recurrent Hitchhiking on Divergence and Demographic Inference in Drosophila

inferred← citeshttps://doi.org/10.1093/gbe/evy218openalex-snapshot

The Evolution of Small-RNA-Mediated Silencing of an Invading Transposable Element

inferred← citeshttps://doi.org/10.1093/gbe/evz082openalex-snapshot

DNA Motifs Are Not General Predictors of Recombination in Two Drosophila Sister Species

inferred← citeshttps://doi.org/10.1093/gbe/evz086openalex-snapshot

Adaptation and Conservation throughout the Drosophila melanogaster Life-Cycle

inferred← citeshttps://doi.org/10.1093/gbe/evz090openalex-snapshot

Divergent Fine-Scale Recombination Landscapes between a Freshwater and Marine Population of Threespine Stickleback Fish

inferred← citeshttps://doi.org/10.1093/gbe/evz101openalex-snapshot

Parallel Molecular Evolution in Pathways, Genes, and Sites in High-Elevation Hummingbirds Revealed by Comparative Transcriptomics

inferred← citeshttps://doi.org/10.1093/genetics/iyab077openalex-snapshot

Parallel and population-specific gene regulatory evolution in cold-adapted fly populations

inferred← citeshttps://doi.org/10.1093/genetics/iyab094openalex-snapshot

Revisiting the notion of deleterious sweeps

inferred← citeshttps://doi.org/10.1093/genetics/iyab211openalex-snapshot

Synergistic epistasis of the deleterious effects of transposable elements

inferred← citeshttps://doi.org/10.1093/genetics/iyac106openalex-snapshot

Turning coldspots into hotspots: targeted recruitment of axis protein Hop1 stimulates meiotic recombination in Saccharomyces cerevisiae

inferred← citeshttps://doi.org/10.1093/genetics/iyad158openalex-snapshot

Female meiotic drive shapes the distribution of rare inversion polymorphisms in Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/genetics/iyae019openalex-snapshot

Enrichment of hard sweeps on the X chromosome compared to autosomes in six Drosophila species

inferred← citeshttps://doi.org/10.1093/genetics/iyae089openalex-snapshot

Selection leads to false inferences of introgression using popular methods

inferred← citeshttps://doi.org/10.1093/genetics/iyae100openalex-snapshot

A general and efficient representation of ancestral recombination graphs

inferred← citeshttps://doi.org/10.1093/genetics/iyae180openalex-snapshot

Population size rescaling significantly biases outcomes of forward-in-time population genetic simulations

inferred← citeshttps://doi.org/10.1093/genetics/iyaf048openalex-snapshot

A model of Hill-Robertson interference caused by purifying selection in a nonrecombining genome

inferred← citeshttps://doi.org/10.1093/genetics/iyaf232openalex-snapshot

Estimating the additive genetic variance for relative fitness from changes in allele frequency

inferred← citeshttps://doi.org/10.1093/genetics/iyaf263openalex-snapshot

Effects of rescaling forward-in-time population genetic simulations

inferred← citeshttps://doi.org/10.1093/genetics/iyag076openalex-snapshot

Chromosome-specific differences in the recombination landscape of spontaneous meiotic nondisjunction

inferred← citeshttps://doi.org/10.1093/genetics/iyag142openalex-snapshot

Incorporating experimental mortality improves statistical inference of crossover patterning along meiotic chromosomes

inferred← citeshttps://doi.org/10.1093/genetics/iyag181openalex-snapshot

Haplotype structure: an overlooked key factor shaping the genomic selection response

inferred← citeshttps://doi.org/10.1093/genetics/iyag222openalex-snapshot

Allelic gene conversion softens selective sweeps

inferred← citeshttps://doi.org/10.1093/gigascience/giad056openalex-snapshot

Identification of sex chromosomes and primary sex ratio in the small hive beetle, a worldwide parasite of honey bees

inferred← citeshttps://doi.org/10.1093/gigascience/giad059openalex-snapshot

GADMA2: more efficient and flexible demographic inference from genetic data

inferred← citeshttps://doi.org/10.1093/jeb/voae015openalex-snapshot

The influence of GC -biased gene conversion on non-adaptive sequence evolution in short introns of Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/jhered/ess136openalex-snapshot

Background Selection 20 Years on

inferred← citeshttps://doi.org/10.1093/jhered/esy041openalex-snapshot

Genome-Wide Patterns of Sequence Divergence of Protein-Coding Genes BetweenDrosophila buzzatiiandD. mojavensis

inferred← citeshttps://doi.org/10.1093/molbev/msaa038openalex-snapshot

Predicting the Landscape of Recombination Using Deep Learning

inferred← citeshttps://doi.org/10.1093/molbev/msaa107openalex-snapshot

Degradation of the Repetitive Genomic Landscape in a Close Relative of Caenorhabditis elegans

inferred← citeshttps://doi.org/10.1093/molbev/msaa120openalex-snapshot

Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses

inferred← citeshttps://doi.org/10.1093/molbev/msaa171openalex-snapshot

The Theory and Applications of Measuring Broad-Range and Chromosome-Wide Recombination Rate from Allele Frequency Decay around a Selected Locus

inferred← citeshttps://doi.org/10.1093/molbev/msab014openalex-snapshot

Inferring Adaptive Introgression Using Hidden Markov Models

inferred← citeshttps://doi.org/10.1093/molbev/msab050openalex-snapshot

The Impact of Purifying and Background Selection on the Inference of Population History: Problems and Prospects

inferred← citeshttps://doi.org/10.1093/molbev/msab061openalex-snapshot

The Genomic Architecture of Adaptation to Larval Malnutrition Points to a Trade-off with Adult Starvation Resistance in Drosophila

inferred← citeshttps://doi.org/10.1093/molbev/msab169openalex-snapshot

Patterns and Causes of Signed Linkage Disequilibria in Flies and Plants

inferred← citeshttps://doi.org/10.1093/molbev/msab259openalex-snapshot

Drosophila Evolution over Space and Time (DEST): A New Population Genomics Resource

inferred← citeshttps://doi.org/10.1093/molbev/msab368openalex-snapshot

A Population Genomic Assessment of Three Decades of Evolution in a Natural Drosophila Population

inferred← citeshttps://doi.org/10.1093/molbev/msac122openalex-snapshot

Interactions Between Natural Selection and Recombination Shape the Genomic Landscape of Introgression

inferred← citeshttps://doi.org/10.1093/molbev/msac268openalex-snapshot

Enrichment of Hard Sweeps on the X Chromosome in Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/molbev/msae063openalex-snapshot

Multiple Genomic Landscapes of Recombination and Genomic Divergence in Wild Populations of House Mice—The Role of Chromosomal Fusions and Prdm9

inferred← citeshttps://doi.org/10.1093/molbev/msae091openalex-snapshot

Boundary Effects Cause False Signals of Range Expansions in Population Genomic Data

inferred← citeshttps://doi.org/10.1093/molbev/msae118openalex-snapshot

Biases in ARG-Based Inference of Historical Population Size in Populations Experiencing Selection

inferred← citeshttps://doi.org/10.1093/molbev/msae273openalex-snapshot

Selection Can Favor a Recombination Landscape That Limits Polygenic Adaptation

inferred← citeshttps://doi.org/10.1093/molbev/msaf132openalex-snapshot

Footprints of Worldwide Adaptation in Structured Populations of Drosophila melanogaster Through the Expanded DEST 2.0 Genomic Resource

inferred← citeshttps://doi.org/10.1093/molbev/msaf304openalex-snapshot

Recombination Suppression Drives Expansion of the Drosophila Dot Chromosome

inferred← citeshttps://doi.org/10.1093/molbev/msaf313openalex-snapshot

SLiM 5: Eco-evolutionary Simulations Across Multiple Chromosomes and Full Genomes

inferred← citeshttps://doi.org/10.1093/molbev/msag216openalex-snapshot

Gene-level complexity explains genome-wide variation in the distribution of fitness effects

inferred← citeshttps://doi.org/10.1093/molbev/mss222openalex-snapshot

Codon Usage Bias and Effective Population Sizes on the X Chromosome versus the Autosomes in Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/molbev/mst205openalex-snapshot

Massive Habitat-Specific Genomic Response in D. melanogaster Populations during Experimental Evolution in Hot and Cold Environments

inferred← citeshttps://doi.org/10.1093/molbev/mst220openalex-snapshot

Population Genomic Analysis Reveals No Evidence for GC-Biased Gene Conversion in Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/molbev/mst270openalex-snapshot

Differential Strengths of Positive Selection Revealed by Hitchhiking Effects at Small Physical Scales in Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/molbev/msu056openalex-snapshot

The Relation between Recombination Rate and Patterns of Molecular Evolution and Variation in Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/molbev/msu242openalex-snapshot

Crossing-Over in a Hypervariable Species Preferentially Occurs in Regions of High Local Similarity

inferred← citeshttps://doi.org/10.1093/molbev/msu320openalex-snapshot

Patterns of Linkage Disequilibrium and Long Range Hitchhiking in Evolving Experimental Drosophila melanogaster Populations

inferred← citeshttps://doi.org/10.1093/molbev/msv194openalex-snapshot

The Mosaic Ancestry of the Drosophila Genetic Reference Panel and the D. melanogaster Reference Genome Reveals a Network of Epistatic Fitness Interactions

inferred← citeshttps://doi.org/10.1093/molbev/msv236openalex-snapshot

Adaptive Evolution Is Substantially Impeded by Hill–Robertson Interference in Drosophila

inferred← citeshttps://doi.org/10.1093/molbev/msw014openalex-snapshot

Parallel Evolution of Copy-Number Variation across Continents inDrosophila melanogaster

inferred← citeshttps://doi.org/10.1093/molbev/msw232openalex-snapshot

Parallel Evolution of Cold Tolerance Within Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/molbev/msx207openalex-snapshot

Multiple Modes of Positive Selection Shaping the Patterns of Incomplete Selective Sweeps over African Populations of Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/molbev/msx272openalex-snapshot

Effects of Demographic History on the Detection of Recombination Hotspots from Linkage Disequilibrium

inferred← citeshttps://doi.org/10.1093/molbev/msx317openalex-snapshot

The Effects of Sex-Biased Gene Expression and X-Linkage on Rates of Sequence Evolution in Drosophila

inferred← citeshttps://doi.org/10.1093/molbev/msy005openalex-snapshot

Variable Rates of Simple Satellite Gains across the Drosophila Phylogeny

inferred← citeshttps://doi.org/10.1093/molbev/msy164openalex-snapshot

Nearly Neutral Evolution across the Drosophila melanogaster Genome

inferred← citeshttps://doi.org/10.1093/molbev/msz048openalex-snapshot

Large-Scale Comparative Analysis of Codon Models Accounting for Protein and Nucleotide Selection

inferred← citeshttps://doi.org/10.1093/molbev/msz130openalex-snapshot

Extreme Differences in Recombination Rate between the Genomes of a Solitary and a Social Bee

inferred← citeshttps://doi.org/10.1093/molbev/msz183openalex-snapshot

Optimizing the Power to Identify the Genetic Basis of Complex Traits with Evolve and Resequence Studies

inferred← citeshttps://doi.org/10.1093/molbev/msz271openalex-snapshot

Recurrent Collection of Drosophila melanogaster from Wild African Environments and Genomic Insights into Species History

inferred← citeshttps://doi.org/10.1093/nar/gkz372openalex-snapshot

iMKT: the integrative McDonald and Kreitman test

inferred← citeshttps://doi.org/10.1093/sysbio/syaa063openalex-snapshot

Genomic Characterization and Curation of UCEs Improves Species Tree Reconstruction

inferred← citeshttps://doi.org/10.1098/rspb.2022.1857openalex-snapshot

Genome-wide selection signatures reveal widespread synergistic effects of two different stressors in Drosophila melanogaster

inferred← citeshttps://doi.org/10.1098/rspb.2024.2629openalex-snapshot

The adaptive value of recombination in resolving intralocus sexual conflict by gene duplication

inferred← citeshttps://doi.org/10.1098/rstb.2013.0024openalex-snapshot

Adaptive divergence of a transcriptional enhancer between populations of Drosophila melanogaster

inferred← citeshttps://doi.org/10.1098/rstb.2016.0001openalex-snapshot

Evolutionary mysteries in meiosis

inferred← citeshttps://doi.org/10.1098/rstb.2016.0455openalex-snapshot

Variation in recombination frequency and distribution across eukaryotes: patterns and processes

inferred← citeshttps://doi.org/10.1098/rstb.2016.0458openalex-snapshot

Coevolution between transposable elements and recombination

inferred← citeshttps://doi.org/10.1098/rstb.2016.0459openalex-snapshot

Recombination rate plasticity: revealing mechanisms by design

inferred← citeshttps://doi.org/10.1098/rstb.2016.0462openalex-snapshot

The consequences of sequence erosion in the evolution of recombination hotspots

inferred← citeshttps://doi.org/10.1098/rstb.2016.0469openalex-snapshot

Connecting theory and data to understand recombination rate evolution

inferred← citeshttps://doi.org/10.1098/rstb.2016.0471openalex-snapshot

Background selection as null hypothesis in population genomics: insights and challenges from Drosophila studies

inferred← citeshttps://doi.org/10.1098/rstb.2017.0279openalex-snapshot

Recombination: the good, the bad and the variable

inferred← citeshttps://doi.org/10.1098/rstb.2019.0533openalex-snapshot

The importance of intrinsic postzygotic barriers throughout the speciation process

inferred← citeshttps://doi.org/10.1101/006643openalex-snapshot

Genetic dissection of courtship song variation using the Drosophila Synthetic Population Resource

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