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SSD1 suppresses phenotypes induced by the lack of Elongator-dependent tRNA modifications

https://doi.org/10.1371/journal.pgen.1008117
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inferredcites →https://doi.org/10.1002/(sici)1097-0061(19980130)14:2<115::aid-yea204>3.0.co;2-2openalex-snapshot
Designer deletion strains derived fromSaccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR-mediated gene disruption and other applications
inferredcites →https://doi.org/10.1002/1873-3468.12865openalex-snapshot
Structural asymmetry in the eukaryotic Elongator complex
inferredcites →https://doi.org/10.1007/978-1-4939-6518-2_13openalex-snapshot
Determining if an mRNA is a Substrate of Nonsense-Mediated mRNA Decay in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1007/bf00281615openalex-snapshot
A general suppressor of RNA polymerase I, II and III mutations in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1007/bf02426955openalex-snapshot
Molecular and functional characterization of a mutant allele of the mitogen-activated protein-kinase gene SLT2(MPK1) rescued from yeast autolytic mutants
inferredcites →https://doi.org/10.1007/s00294-019-01048-9openalex-snapshot
SSD1 modifies phenotypes of Elongator mutants
inferredcites →https://doi.org/10.1016/0092-8674(90)90371-kopenalex-snapshot
Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site
inferredcites →https://doi.org/10.1016/0302-4598(88)80052-7openalex-snapshot
Methods in Yeast Genetics
inferredcites →https://doi.org/10.1016/0378-1119(92)90454-wopenalex-snapshot
Multifunctional yeast high-copy-number shuttle vectors
inferredcites →https://doi.org/10.1016/bs.enz.2017.03.001openalex-snapshot
Structures and Activities of the Elongator Complex and Its Cofactors
inferredcites →https://doi.org/10.1016/bs.enz.2017.03.005openalex-snapshot
The Importance of Being Modified
inferredcites →https://doi.org/10.1016/j.bbagrm.2017.11.006openalex-snapshot
Elongator—a tRNA modifying complex that promotes efficient translational decoding
inferredcites →https://doi.org/10.1016/j.cell.2015.05.022openalex-snapshot
Optimization of Codon Translation Rates via tRNA Modifications Maintains Proteome Integrity
inferredcites →https://doi.org/10.1016/j.celrep.2012.04.001openalex-snapshot
Translational Control of Cell Division by Elongator
inferredcites →https://doi.org/10.1016/j.cub.2009.10.071openalex-snapshot
Cbk1 Regulation of the RNA-Binding Protein Ssd1 Integrates Cell Fate with Translational Control
inferredcites →https://doi.org/10.1016/j.molcel.2005.02.018openalex-snapshot
Elp1p, the Yeast Homolog of the FD Disease Syndrome Protein, Negatively Regulates Exocytosis Independently of Transcriptional Elongation
inferredcites →https://doi.org/10.1016/j.molcel.2006.07.031openalex-snapshot
Elevated Levels of Two tRNA Species Bypass the Requirement for Elongator Complex in Transcription and Exocytosis
inferredcites →https://doi.org/10.1016/j.molcel.2017.11.002openalex-snapshot
Transcriptome-wide Analysis of Roles for tRNA Modifications in Translational Regulation
inferredcites →https://doi.org/10.1016/j.tig.2018.05.006openalex-snapshot
Genetic Network Complexity Shapes Background-Dependent Phenotypic Expression
inferredcites →https://doi.org/10.1016/s0021-9673(00)94152-9openalex-snapshot
Ribonucleoside analysis by reversed-phase high-performance liquid chromatography
inferredcites →https://doi.org/10.1016/s0301-4770(08)61467-0openalex-snapshot
Chapter 1 Ribonucleoside Analysis by Reversed-Phase High Performance Liquid Chromatography
inferredcites →https://doi.org/10.1016/s1097-2765(00)80179-3openalex-snapshot
Elongator, a Multisubunit Component of a Novel RNA Polymerase II Holoenzyme for Transcriptional Elongation
inferredcites →https://doi.org/10.1038/nature07643openalex-snapshot
Ubiquitin-related modifier Urm1 acts as a sulphur carrier in thiolation of eukaryotic transfer RNA
inferredcites →https://doi.org/10.1046/j.1365-2958.2001.02705.xopenalex-snapshot
Kluyveromyces lactis zymocin mode of action is linked to RNA polymerase II function via Elongator
inferredcites →https://doi.org/10.1046/j.1365-313x.2001.00967.xopenalex-snapshot
Resistance to the plant PR‐5 protein osmotin in the model fungus Saccharomyces cerevisiae is mediated by the regulatory effects of SSD1 on cell wall composition
inferredcites →https://doi.org/10.1073/pnas.022042899openalex-snapshot
Elongator is a histone H3 and H4 acetyltransferase important for normal histone acetylation levels in vivo
inferredcites →https://doi.org/10.1073/pnas.0437995100openalex-snapshot
A Saccharomyces cerevisiae mutant with increased virulence
inferredcites →https://doi.org/10.1073/pnas.1300781110openalex-snapshot
tRNA tK UUU , tQ UUG , and tE UUC wobble position modifications fine-tune protein translation by promoting ribosome A-site binding
inferredcites →https://doi.org/10.1074/jbc.272.26.16103openalex-snapshot
Ssd1p of Saccharomyces cerevisiae Associates with RNA
inferredcites →https://doi.org/10.1074/jbc.m105303200openalex-snapshot
RNA Polymerase II Elongator Holoenzyme Is Composed of Two Discrete Subcomplexes
inferredcites →https://doi.org/10.1074/jbc.m110.113100openalex-snapshot
Trm112p Is a 15-kDa Zinc Finger Protein Essential for the Activity of Two tRNA and One Protein Methyltransferases in Yeast
inferredcites →https://doi.org/10.1074/jbc.m804043200openalex-snapshot
Thio-modification of Yeast Cytosolic tRNA Requires a Ubiquitin-related System That Resembles Bacterial Sulfur Transfer Systems
inferredcites →https://doi.org/10.1080/15476286.2018.1526539openalex-snapshot
Identification of factors that promote biogenesis of tRNACGASer
inferredcites →https://doi.org/10.1083/jcb.123.6.1821openalex-snapshot
The SLT2 (MPK1) MAP kinase homolog is involved in polarized cell growth in Saccharomyces cerevisiae.
inferredcites →https://doi.org/10.1083/jcb.200910074openalex-snapshot
A dual function for chaperones SSB–RAC and the NAC nascent polypeptide–associated complex on ribosomes
inferredcites →https://doi.org/10.1083/jcb.201011061openalex-snapshot
The yeast Cbk1 kinase regulates mRNA localization via the mRNA-binding protein Ssd1
inferredcites →https://doi.org/10.1091/mbc.e09-04-0347openalex-snapshot
Budding YeastSSD1-VRegulates Transcript Levels of Many Longevity Genes and Extends Chronological Life Span in Purified Quiescent Cells
inferredcites →https://doi.org/10.1093/emboj/20.8.1993openalex-snapshot
Saccharomyces cerevisiae Elongator mutations confer resistance to the Kluyveromyces lactis zymocin
inferredcites →https://doi.org/10.1093/genetics/122.1.19openalex-snapshot
A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae.
inferredcites →https://doi.org/10.1093/genetics/160.1.83openalex-snapshot
Saccharomyces cerevisiae MPT5 and SSD1 Function in Parallel Pathways to Promote Cell Wall Integrity
inferredcites →https://doi.org/10.1093/genetics/162.3.1091openalex-snapshot
High-Resolution Genetic Mapping With Ordered Arrays of Saccharomyces cerevisiae Deletion Mutants
inferredcites →https://doi.org/10.1093/nar/gkn1023openalex-snapshot
Mechanistic characterization of the sulfur-relay system for eukaryotic 2-thiouridine biogenesis at tRNA wobble positions
inferredcites →https://doi.org/10.1093/nar/gkv832openalex-snapshot
The role of wobble uridine modifications in +1 translational frameshifting in eukaryotes
inferredcites →https://doi.org/10.1098/rsob.120093openalex-snapshot
The Saccharomyces cerevisiae W303-K6001 cross-platform genome sequence: insights into ancestry and physiology of a laboratory mutt
inferredcites →https://doi.org/10.1101/gad.10.10.1247openalex-snapshot
Repression domain of the yeast global repressor Tup1 interacts directly with histones H3 and H4.
inferredcites →https://doi.org/10.1101/gad.1956510openalex-snapshot
tRNA biology charges to the front
inferredcites →https://doi.org/10.1111/febs.14080openalex-snapshot
The background puzzle: how identical mutations in the same gene lead to different disease symptoms
inferredcites →https://doi.org/10.1111/j.1365-2443.2010.01452.xopenalex-snapshot
Saccharomyces cerevisiae Ssd1p promotes CLN2 expression by binding to the 5′‐untranslated region of CLN2 mRNA
inferredcites →https://doi.org/10.1128/ecosalplus.esp-0007-2013openalex-snapshot
Transfer RNA Modification: Presence, Synthesis, and Function
inferredcites →https://doi.org/10.1128/mcb.01542-07openalex-snapshot
Eukaryotic Wobble Uridine Modifications Promote a Functionally Redundant Decoding System
inferredcites →https://doi.org/10.1128/mcb.02271-07openalex-snapshot
Ssd1 Is Required for Thermotolerance and Hsp104-Mediated Protein Disaggregation in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1128/mcb.11.4.2133openalex-snapshot
The SIT4 protein phosphatase functions in late G1 for progression into S phase.
inferredcites →https://doi.org/10.1128/mcb.11.4.2133-2148.1991openalex-snapshot
The SIT4 Protein Phosphatase Functions in Late G 3 for Progression into S Phase
inferredcites →https://doi.org/10.1128/mcb.11.6.3369openalex-snapshot
The Saccharomyces cerevisiae SRK1 gene, a suppressor of bcy1 and ins1, may be involved in protein phosphatase function.
inferredcites →https://doi.org/10.1128/mcb.11.6.3369-3373.1991openalex-snapshot
The Saccharomyces cerevisiae SRK1 Gene, a Suppressor of bcy1 and ins1, May Be Involved in Protein Phosphatase Function
inferredcites →https://doi.org/10.1128/mcb.12.3.1162openalex-snapshot
A Synthetic Lethal Screen Identifies SLK1, a Novel Protein Kinase Homolog Implicated in Yeast Cell Morphogenesis and Cell Growth
inferredcites →https://doi.org/10.1128/mcb.13.5.3067openalex-snapshot
A Yeast Mitogen-Activated Protein Kinase Homolog (Mpk1p) Mediates Signalling by Protein Kinase C
inferredcites →https://doi.org/10.1128/mcb.17.5.2764openalex-snapshot
Exonuclease I of Saccharomyces cerevisiae Functions in Mitotic Recombination In Vivo and In Vitro
inferredcites →https://doi.org/10.1128/mcb.23.24.9283-9292.2003openalex-snapshot
Novel Methyltransferase for Modified Uridine Residues at the Wobble Position of tRNA
inferredcites →https://doi.org/10.1128/mmbr.69.2.262-291.2005openalex-snapshot
Cell Wall Integrity Signaling in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1261/rna.1184108openalex-snapshot
A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1261/rna.2172105openalex-snapshot
The Kluyveromyces lactis γ-toxin targets tRNA anticodons
inferredcites →https://doi.org/10.1261/rna.558707openalex-snapshot
A conserved modified wobble nucleoside (mcm 5 s 2 U) in lysyl-tRNA is required for viability in yeast
inferredcites →https://doi.org/10.1261/rna.7247705openalex-snapshot
An early step in wobble uridine tRNA modification requires the Elongator complex
inferredcites →https://doi.org/10.1371/journal.pbio.0060255openalex-snapshot
Diverse RNA-Binding Proteins Interact with Functionally Related Sets of RNAs, Suggesting an Extensive Regulatory System
inferredcites →https://doi.org/10.1371/journal.pgen.1000684openalex-snapshot
The Elongator Complex Interacts with PCNA and Modulates Transcriptional Silencing and Sensitivity to DNA Damage Agents
inferredcites →https://doi.org/10.1371/journal.pgen.1002258openalex-snapshot
Elongator Complex Influences Telomeric Gene Silencing and DNA Damage Response by Its Role in Wobble Uridine tRNA Modification
inferredcites →https://doi.org/10.1371/journal.pgen.1003647openalex-snapshot
Modification of tRNALysUUU by Elongator Is Essential for Efficient Translation of Stress mRNAs
inferredcites →https://doi.org/10.1371/journal.pgen.1003675openalex-snapshot
Loss of a Conserved tRNA Anticodon Modification Perturbs Cellular Signaling
inferredcites →https://doi.org/10.1371/journal.pone.0020783openalex-snapshot
Unexpected Accumulation of ncm5U and ncm5s2U in a trm9 Mutant Suggests an Additional Step in the Synthesis of mcm5U and mcm5s2U
inferredcites →https://doi.org/10.1371/journal.pone.0085212openalex-snapshot
Cell Morphogenesis Proteins Are Translationally Controlled through UTRs by the Ndr/LATS Target Ssd1
inferredcites →https://doi.org/10.1371/journal.pone.0119261openalex-snapshot
Loss of Anticodon Wobble Uridine Modifications Affects tRNALys Function and Protein Levels in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1534/g3.117.040022openalex-snapshot
Whole-Genome Sequence and Variant Analysis of W303, a Widely-Used Strain of Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1534/genetics.108.088443openalex-snapshot
Genomewide Screen for Negative Regulators of Sirtuin Activity inSaccharomyces cerevisiaeReveals 40 Loci and Links to Metabolism
inferredcites →https://doi.org/10.1534/genetics.111.128264openalex-snapshot
Regulation of Cell Wall Biogenesis in Saccharomyces cerevisiae : The Cell Wall Integrity Signaling Pathway
inferredcites →https://doi.org/10.1534/genetics.166.4.1661openalex-snapshot
Saccharomyces cerevisiae SSD1-V Confers Longevity by a Sir2p-Independent Mechanism
inferredcites →https://doi.org/10.4161/15476286.2014.992273openalex-snapshot
Distribution and frequencies of post-transcriptional modifications in tRNAs
inferredcites →https://doi.org/10.4161/15476286.2014.992276openalex-snapshot
Elongator, a conserved complex required for wobble uridine modifications in Eukaryotes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4812829openalex-extracted
inferred← citeshttps://doi.org/10.1007/s00294-019-01048-9openalex-snapshot
SSD1 modifies phenotypes of Elongator mutants
inferred← citeshttps://doi.org/10.1007/s00294-020-01103-wopenalex-snapshot
Induction of protein aggregation and starvation response by tRNA modification defects
inferred← citeshttps://doi.org/10.1016/j.xgen.2024.100656openalex-snapshot
Comparative modeling reveals the molecular determinants of aneuploidy fitness cost in a wild yeast model
inferred← citeshttps://doi.org/10.1038/s41467-024-46786-8openalex-snapshot
Rapid evolution of an adaptive multicellular morphology of Candida auris during systemic infection
inferred← citeshttps://doi.org/10.1073/pnas.2312874121openalex-snapshot
tRNA epitranscriptome determines pathogenicity of the opportunistic pathogen Pseudomonas aeruginosa
inferred← citeshttps://doi.org/10.1093/g3journal/jkac246openalex-snapshot
yEvo: experimental evolution in high school classrooms selects for novel mutations that impact clotrimazole resistance in Saccharomyces cerevisiae
inferred← citeshttps://doi.org/10.1093/nar/gkaa560openalex-snapshot
Eukaryotic life without tQCUG: the role of Elongator-dependent tRNA modifications in Dictyostelium discoideum
inferred← citeshttps://doi.org/10.1128/spectrum.00295-21openalex-snapshot
Interplay of the RNA Exosome Complex and RNA-Binding Protein Ssd1 in Maintaining Cell Wall Stability in Yeast
inferred← citeshttps://doi.org/10.1261/rna.080181.124openalex-snapshot
Sod1-deficient cells are impaired in formation of the modified nucleosides mcm5s2U and yW in tRNA
inferred← citeshttps://doi.org/10.1261/rna.080199.124openalex-snapshot
Investigating the role of RNA-binding protein Ssd1 in aneuploidy tolerance through network analysis
inferred← citeshttps://doi.org/10.1371/journal.pgen.1008893openalex-snapshot
Hypomodified tRNA in evolutionarily distant yeasts can trigger rapid tRNA decay to activate the general amino acid control response, but with different consequences
inferred← citeshttps://doi.org/10.1371/journal.pgen.1011454openalex-snapshot
The response to single-gene duplication implicates translation as a key vulnerability in aneuploid yeast
inferred← citeshttps://doi.org/10.21769/bioprotoc.5213openalex-snapshot
HPLC Analysis of tRNA‐Derived Nucleosides
inferred← citeshttps://doi.org/10.3390/ijms22168753openalex-snapshot
Role of SSD1 in Phenotypic Variation of Saccharomyces cerevisiae Strains Lacking DEG1-Dependent Pseudouridylation
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