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Historical Mammal Extinction on Christmas Island (Indian Ocean) Correlates with Introduced Infectious Disease

https://doi.org/10.1371/journal.pone.0003602

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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A new method for calculating evolutionary substitution rates

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Trypanosoma lewisi: Termination of pregnancy in the infected rat

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Multigene phylogeny of the Old World mice, Murinae, reveals distinct geographic lineages and the declining utility of mitochondrial genes compared to nuclear genes

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Pliocene colonization and adaptive radiations in Australia and New Guinea (Sahul): Multilocus systematics of the old endemic rodents (Muroidea: Murinae)

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The general stochastic model of nucleotide substitution

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Notes on Nagana and on Some Haematozoa observed during my travels

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New Evidence Concerning the Extinction of The Endemic Murid Rattus macleari From Christmas Island, Indian Ocean.

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Emerging infectious disease and the loss of biodiversity in a Neotropical amphibian community

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Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers.

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The Pattern and Timing of Diversification of Philippine Endemic Rodents: Evidence from Mitochondrial and Nuclear Gene Sequences

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

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Ancient DNA Identification of Early 20th Century Simian T-Cell Leukemia Virus Type 1

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MAFFT version 5: improvement in accuracy of multiple sequence alignment

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Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites.

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Review Paper. Ancient DNA

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Diagnosis of a Trypanosoma lewisi-like (Herpetosoma) infection in a sick infant from Thailand

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Absence of Yersinia pestis-specific DNA in human teeth from five European excavations of putative plague victims

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1. Report on a Zoological Collection made by the Officers of H.M.S. ‘Flying‐Fish’ at Christmas Island, Indian Ocean

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Was a ‘hyperdisease’ responsible for the late Pleistocene megafaunal extinction?

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Ancient DNA: Do It Right or Not at All

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Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily

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Comparison and Optimization of Ancient DNA Extraction

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Mammal Species of the World: A Taxonomic and Geographic Reference

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Distribution of rat species (Rattus spp.) on the atolls of the Marshall Islands: past and present dispersal

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A monograph of Christmas Island (Indian Ocean)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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“Weight of evidence” as a tool for evaluating disease in wildlife: An example assessing parasitic infection in Northern bobwhite (Colinus virginianus)

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A perspective for resolving the systematics of Rattus, the vertebrates with the most influence on human welfare

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Trypanosoma (Euglenozoa: Kinetoplastea) infections in rodents, bats, and shrews along an elevation and disturbance gradient in Central Sulawesi, Indonesia

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Introduction and Concepts

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Extinction of Island Mammals

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Exotic black rats increase invertebrate Ordinal richness in urban habitat remnants

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Survival of an Extinct in the Wild skink from Christmas Island is reduced by an invasive centipede: implications for future reintroductions

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Multiple Cryptosporidium genotypes detected in wild black rats (Rattus rattus) from northern Australia

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Sensitivity testing of trypanosome detection by PCR from whole blood samples using manual and automated DNA extraction methods

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Parasites and invasions: changes in gastrointestinal helminth assemblages in invasive and native rodents in Senegal

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The kinetoplast DNA of the Australian trypanosome, Trypanosoma copemani, shares features with Trypanosoma cruzi and Trypanosoma lewisi

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Unexpectedly high diversity of trypanosomes in small sub-Saharan mammals

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Trypanosomes genetic diversity, polyparasitism and the population decline of the critically endangered Australian marsupial, the brush tailed bettong or woylie (Bettongia penicillata)

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Host selection and parasite infection in Aedes taeniorhynchus, endemic disease vector in the Galápagos Islands

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The molecular epidemiology of parasite infections: Tools and applications

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Biogeography of extinction: The demise of insular mammals from the Late Pleistocene till today

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Time of re-emergence of Christmas Island and its biogeographical significance

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Trypanosomes of Australian Mammals: Knowledge Gaps Regarding Transmission and Biosecurity

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Protist Collections: Essential for Future Research

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Isotopic ecology and extirpation chronology of the extinct Lesser Antillean native rodent Antillomys rayi Brace et al. (2015)

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Examining Natural History through the Lens of Palaeogenomics

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Use of mammalian museum specimens to test hypotheses about the geographic expansion of Lyme disease in the southeastern United States

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Molecular epidemiology of Giardia duodenalis in an endangered carnivore – The African painted dog

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Trypanosoma from rodents as potential source of infection in human-shaped landscapes of South-East Asia

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Terrestrial Mammals

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Terrestrial mammal diversity, conservation and management in Australia

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Murine rodents: late but highly successful invaders

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Infectious disease as a driver of declines and extinctions

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Author comment: Infectious disease as a driver of declines and extinctions — R0/PR1

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Recommendation: Infectious disease as a driver of declines and extinctions — R0/PR2

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Decision: Infectious disease as a driver of declines and extinctions — R0/PR3

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Author comment: Infectious disease as a driver of declines and extinctions — R1/PR4

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Recommendation: Infectious disease as a driver of declines and extinctions — R1/PR5

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Decision: Infectious disease as a driver of declines and extinctions — R1/PR6

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Ghosts of Christmas past?: absence of trypanosomes in feral cats and black rats from Christmas Island and Western Australia

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Sudden and rapid decline of the abundant marsupial Bettongia penicillata in Australia

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The diversity, distribution and host-parasite associations of trypanosomes in Western Australian wildlife

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New aliens in Australia: 18 years of vertebrate interceptions

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Investigating the impact of black rats (Rattus rattus) on the endemic and threatened avifauna of Christmas Island

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Evaluating predator control using two non-invasive population metrics: a camera trap activity index and density estimation from scat genotyping

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When the ‘native cat’ would ‘plague’: historical hyperabundance in the quoll (Marsupialia : Dasyuridae) and an assessment of the role of disease, cats and foxes in its curtailment

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Biodiversity of parasite assemblages in the genus Petrogale and its relation to the phylogeny and biogeography of their hosts

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Invasive predators and global biodiversity loss

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Challenging the dogma of the ‘Island Syndrome’: a study of helminth parasites of feral cats and black rats on Christmas Island

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Population collapse to extinction: the catastrophic combination of parasitism and Allee effect

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Seabird Islands

inferred← citeshttps://doi.org/10.1093/acprof:osobl/9780199735693.003.0004openalex-snapshot

Direct Impacts of Seabird Predators on Island Biota other than Seabirds

inferred← citeshttps://doi.org/10.1093/aobpla/plv085openalex-snapshot

Non-native megaherbivores: the case for novel function to manage plant invasions on islands

inferred← citeshttps://doi.org/10.1093/biolinnean/blaa018openalex-snapshot

Redrawing Wallace’s Line based on the fauna of Christmas Island, eastern Indian Ocean

inferred← citeshttps://doi.org/10.1093/conphys/cov010openalex-snapshot

Does greater thermal plasticity facilitate range expansion of an invasive terrestrial anuran into higher latitudes?

inferred← citeshttps://doi.org/10.1093/gbe/evw023openalex-snapshot

Evolutionary Relationships among Extinct and Extant Sloths: The Evidence of Mitogenomes and Retroviruses

inferred← citeshttps://doi.org/10.1093/jmammal/gyw034openalex-snapshot

A new species ofRattus(Rodentia: Muridae) from Manus Island, Papua New Guinea

inferred← citeshttps://doi.org/10.1093/jmammal/gyx001openalex-snapshot

Genetic diversity and phylogeny of the Christmas Island flying fox (Pteropus melanotus natalis)

inferred← citeshttps://doi.org/10.1093/jmammal/gyy080openalex-snapshot

Performance of commonly requested destructive museum samples for mammalian genomic studies

inferred← citeshttps://doi.org/10.1093/obo/9780199941728-0134openalex-snapshot

Islands as Evolutionary Laboratories

inferred← citeshttps://doi.org/10.1093/oxfordhb/9780197607770.013.19openalex-snapshot

Historical Ecology and the Archaeology of Islands and Coastlines

inferred← citeshttps://doi.org/10.1098/rsbl.2017.0743openalex-snapshot

Local extinction of the Asian tiger mosquito ( Aedes albopictus ) following rat eradication on Palmyra Atoll

inferred← citeshttps://doi.org/10.1098/rspb.2023.0525openalex-snapshot

Uncovering the Holocene roots of contemporary disease-scapes: bringing archaeology into One Health

inferred← citeshttps://doi.org/10.1098/rstb.2011.0116openalex-snapshot

The changing fates of the world's mammals

inferred← citeshttps://doi.org/10.1098/rstb.2012.0224openalex-snapshot

Disease and the dynamics of extinction

inferred← citeshttps://doi.org/10.1101/108423openalex-snapshot

Biological invasions in rodent communities: from ecological interactions to zoonotic bacterial infection issues

inferred← citeshttps://doi.org/10.1111/1365-2435.12012openalex-snapshot

The ecoimmunology of invasive species

inferred← citeshttps://doi.org/10.1111/1749-4877.12143openalex-snapshot

Global parasite and Rattus rodent invasions: The consequences for rodent‐borne diseases

inferred← citeshttps://doi.org/10.1111/acv.12744openalex-snapshot

Variation in immunity and health in response to introduced avian malaria in an endemic Hawaiian songbird

inferred← citeshttps://doi.org/10.1111/cobi.12177openalex-snapshot

Taxonomic Uncertainty and the Loss of Biodiversity on Christmas Island, Indian Ocean

inferred← citeshttps://doi.org/10.1111/csp2.70167openalex-snapshot

A cosmopolitan parasite of Rattus in the Galápagos rodents raises conservation concerns

inferred← citeshttps://doi.org/10.1111/ddi.12073openalex-snapshot

Origin matters: alien consumers inflict greater damage on prey populations than do native consumers

inferred← citeshttps://doi.org/10.1111/ddi.12150openalex-snapshot

Misleading criticisms of invasion science: a field guide

inferred← citeshttps://doi.org/10.1111/ddi.70265openalex-snapshot

Darwin's Naturalization Conundrum in the Azores: Scale‐Dependent Patterns of Arthropod Invasion

inferred← citeshttps://doi.org/10.1111/geb.12220openalex-snapshot

Disease and competition, not just predation, as drivers of impacts of the black rat ( R attus rattus) on island mammals

inferred← citeshttps://doi.org/10.1111/j.1096-3642.2009.00628.xopenalex-snapshot

Taxonomy, phylogeny, and diversity of the extinct Lesser Antillean rice rats (Sigmodontinae: Oryzomyini), with description of a new genus and species

inferred← citeshttps://doi.org/10.1111/j.1469-1795.2012.00604.xopenalex-snapshot

An emerging infectious pathogen endangers an ancient lineage of common carp by acting synergistically with conspecific exotic strains

inferred← citeshttps://doi.org/10.1111/j.1472-4642.2011.00758.xopenalex-snapshot

Mammals of the northern Philippines: tolerance for habitat disturbance and resistance to invasive species in an endemic insular fauna

inferred← citeshttps://doi.org/10.1111/j.1472-4642.2011.00856.xopenalex-snapshot

Historical bird and terrestrial mammal extinction rates and causes

inferred← citeshttps://doi.org/10.1111/j.1755-263x.2011.00164.xopenalex-snapshot

The disappearing mammal fauna of northern Australia: context, cause, and response

inferred← citeshttps://doi.org/10.1111/mam.12043openalex-snapshot

Range expansion of the invasive house mouse M us musculus domesticus in S enegal, W est A frica: a synthesis of trapping data over three decades, 1983–2014

inferred← citeshttps://doi.org/10.1111/mec.16795openalex-snapshot

Ear mite infection restructures otic microbial networks in conservation–reliant Santa Catalina Island foxes (Urocyon littoralis catalinae)

inferred← citeshttps://doi.org/10.1111/mec.70548openalex-snapshot

Priority Effects Shape Interactions Between Invasive Parasites in Darwin's Finches of the Galápagos Islands

inferred← citeshttps://doi.org/10.1111/zsc.12212openalex-snapshot

The potential and pitfalls of de‐extinction

inferred← citeshttps://doi.org/10.1128/mbio.00812-20openalex-snapshot

Pandemic COVID-19 Joins History’s Pandemic Legion

inferred← citeshttps://doi.org/10.1128/mbio.00863-19openalex-snapshot

Benefits and Costs of Animal Virulence for Microbes

inferred← citeshttps://doi.org/10.1128/mbio.02698-20openalex-snapshot

Preserve a Voucher Specimen! The Critical Need for Integrating Natural History Collections in Infectious Disease Studies

inferred← citeshttps://doi.org/10.1146/annurev-ecolsys-110316-022754openalex-snapshot

Anthropogenic Extinction Dominates Holocene Declines of West Indian Mammals

inferred← citeshttps://doi.org/10.1146/annurev-ecolsys-110411-160304openalex-snapshot

Coextinction and Persistence of Dependent Species in a Changing World

inferred← citeshttps://doi.org/10.1155/2013/571939openalex-snapshot

Infectious Disease, Endangerment, and Extinction

inferred← citeshttps://doi.org/10.11609/jott.2926.9.3.9956-9961openalex-snapshot

First record of tapeworm Moniezia (Cestoda: Anoplocephalidae) infections in Leopards: Coprological survey of gastrointestinal parasites of wild and captive cats in Sri Lanka

inferred← citeshttps://doi.org/10.1177/0959683611430414openalex-snapshot

Late-Holocene asynchronous extinction of endemic mammals on the eastern Canary Islands

inferred← citeshttps://doi.org/10.1177/09596836261458223openalex-snapshot

New direct radiocarbon dates constrain the timing of Nesophontes spp.: Extinction and the arrival of Rattus rattus on Hispaniola (Greater Antilles)

inferred← citeshttps://doi.org/10.1186/1471-2156-12-26openalex-snapshot

Genetic monitoring detects an overlooked cryptic species and reveals the diversity and distribution of three invasive Rattus congeners in south Africa

inferred← citeshttps://doi.org/10.1186/1471-2156-13-92openalex-snapshot

Historically low mitochondrial DNA diversity in koalas (Phascolarctos cinereus)

inferred← citeshttps://doi.org/10.1186/1472-6785-10-6openalex-snapshot

Prevalence of the pathogenic chytrid fungus, Batrachochytrium dendrobatidis, in an endangered population of northern leopard frogs, Rana pipiens

inferred← citeshttps://doi.org/10.1186/1756-3305-4-71openalex-snapshot

Coendangered hard-ticks: threatened or threatening?

inferred← citeshttps://doi.org/10.1186/1756-3305-6-121openalex-snapshot

Morphological polymorphism of Trypanosoma copemani and description of the genetically diverse T. vegrandis sp. nov. from the critically endangered Australian potoroid, the brush-tailed bettong (Bettongia penicillata (Gray, 1837))

inferred← citeshttps://doi.org/10.1186/1756-3305-7-169openalex-snapshot

Temporal and spatial dynamics of trypanosomes infecting the brush-tailed bettong (Bettongia penicillata): a cautionary note of disease-induced population decline

inferred← citeshttps://doi.org/10.1206/0003-0090.428.1.1openalex-snapshot

Late Quaternary Fossil Mammals from the Cayman Islands, West Indies

inferred← citeshttps://doi.org/10.12933/therya-15-236openalex-snapshot

Stemming the tide: progress towards resolving the causes of decline and implementing management responses for the disappearing mammal fauna of northern Australia

inferred← citeshttps://doi.org/10.1371/journal.pntd.0006615openalex-snapshot

Leishmania major and Trypanosoma lewisi infection in invasive and native rodents in Senegal

inferred← citeshttps://doi.org/10.1371/journal.pntd.0008946openalex-snapshot

Effects of land use, habitat characteristics, and small mammal community composition on Leptospira prevalence in northeast Madagascar

inferred← citeshttps://doi.org/10.1371/journal.pone.0060879openalex-snapshot

Correlates between Feeding Ecology and Mercury Levels in Historical and Modern Arctic Foxes (Vulpes lagopus)

inferred← citeshttps://doi.org/10.1371/journal.pone.0095633openalex-snapshot

Hybridization Capture Reveals Evolution and Conservation across the Entire Koala Retrovirus Genome

inferred← citeshttps://doi.org/10.1371/journal.pone.0098002openalex-snapshot

Phylogenetic Species Identification in Rattus Highlights Rapid Radiation and Morphological Similarity of New Guinean Species

inferred← citeshttps://doi.org/10.1371/journal.pone.0108603openalex-snapshot

High Local Diversity of Trypanosoma in a Common Bat Species, and Implications for the Biogeography and Taxonomy of the T. cruzi Clade

inferred← citeshttps://doi.org/10.1371/journal.pone.0110666openalex-snapshot

Spatial Segregation between Invasive and Native Commensal Rodents in an Urban Environment: A Case Study in Niamey, Niger

inferred← citeshttps://doi.org/10.1371/journal.pone.0135389openalex-snapshot

DNA Extraction Method Affects the Detection of a Fungal Pathogen in Formalin-Fixed Specimens Using qPCR

inferred← citeshttps://doi.org/10.1371/journal.pone.0139999openalex-snapshot

Bats, Trypanosomes, and Triatomines in Ecuador: New Insights into the Diversity, Transmission, and Origins of Trypanosoma cruzi and Chagas Disease

inferred← citeshttps://doi.org/10.1371/journal.pone.0147517openalex-snapshot

Interacting Effects of Newcastle Disease Transmission and Illegal Trade on a Wild Population of White-Winged Parakeets in Peru: A Modeling Approach

inferred← citeshttps://doi.org/10.1371/journal.pone.0181240openalex-snapshot

Emergent multisystemic Enterococcus infection threatens endangered Christmas Island reptile populations

inferred← citeshttps://doi.org/10.1371/journal.pone.0181279openalex-snapshot

Increased genetic diversity and prevalence of co-infection with Trypanosoma spp. in koalas (Phascolarctos cinereus) and their ticks identified using next-generation sequencing (NGS)

inferred← citeshttps://doi.org/10.1371/journal.pone.0237216openalex-snapshot

Modelling the distribution of Mustela nivalis and M. putorius in the Azores archipelago based on native and introduced ranges

inferred← citeshttps://doi.org/10.1371/journal.pone.0237369openalex-snapshot

Association of insularity and body condition to cloacal bacteria prevalence in a small shorebird

inferred← citeshttps://doi.org/10.1371/journal.pone.0256616openalex-snapshot

Sarcoptic mange outbreak decimates South American wild camelid populations in San Guillermo National Park, Argentina

inferred← citeshttps://doi.org/10.15361/2175-0106.2018v34n2p60-68openalex-snapshot

SURVEY OF GASTROINTESTINAL PARASITES OF THE CENTER FOR SCREENING OF WILD ANIMALS FROM SÃO LUÍS, MARANHÃO STATE, BRAZIL

inferred← citeshttps://doi.org/10.1590/0074-02760150253openalex-snapshot

Exploring the environmental diversity of kinetoplastid flagellates in the high-throughput DNA sequencing era

inferred← citeshttps://doi.org/10.1645/12-141.1openalex-snapshot

Comparative Ectoparasite Loads of Five Seabird Species in the Galapagos Islands

inferred← citeshttps://doi.org/10.1645/19-136openalex-snapshot

Native and Introduced Trypanosome Parasites in Endemic and Introduced Murine Rodents of Sulawesi

inferred← citeshttps://doi.org/10.1645/20-30openalex-snapshot

Review of Parasites Found in Extinct Animals: What Can Be Revealed

inferred← citeshttps://doi.org/10.1670/21-057openalex-snapshot

Diet of Bullfrog Tadpoles Lithobates catesbeianus, Shaw 1802, an Invasive Species from Monte Desert

inferred← citeshttps://doi.org/10.17169/refubium-10011openalex-snapshot

Establishing high-throughput genomic and computational methods for the real time study of retroviral endogenization and evolution

inferred← citeshttps://doi.org/10.1890/es12-00380.1openalex-snapshot

Which intrinsic traits predict vulnerability to extinction depends on the actual threatening processes

inferred← citeshttps://doi.org/10.1896/054.060.0126openalex-snapshot

The Mammal Fauna of Wanakipa, Southern Highlands Province, Papua New Guinea

inferred← citeshttps://doi.org/10.19080/gjaa.2017.01.555560openalex-snapshot

The History of Evolution of Life on Earth Told by Paleoparasitology

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