On the public citation graph
Target Region Selection Is a Critical Determinant of Community Fingerprints Generated by 16S Pyrosequencing
0 signed · 293 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/j.1538-7305.1948.tb00917.xopenalex-snapshot
A Mathematical Theory of Communication
inferredcites →https://doi.org/10.1007/978-3-540-29678-2_3338openalex-snapshot
Mathematical Theory of Communication
inferredcites →https://doi.org/10.1007/s15010-001-0064-7openalex-snapshot
Rapid Ribosequencing - an Effective Diagnostic Tool for Detecting Microbial Infection
inferredcites →https://doi.org/10.1016/j.mimet.2003.08.009openalex-snapshot
Review and re-analysis of domain-specific 16S primers
inferredcites →https://doi.org/10.1016/j.mimet.2007.02.005openalex-snapshot
A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria
inferredcites →https://doi.org/10.1016/s0002-9440(10)65688-xopenalex-snapshot
Novel Short-Fragment PCR Assay for Highly Sensitive Broad-Spectrum Detection of Anogenital Human Papillomaviruses
inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot
QIIME allows analysis of high-throughput community sequencing data
inferredcites →https://doi.org/10.1046/j.1198-743x.2001.00260.xopenalex-snapshot
Sequence microdiversity at the ribosomal RNA operons of Escherichia coli pyelonephritogenic strains
inferredcites →https://doi.org/10.1073/pnas.1002601107openalex-snapshot
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
inferredcites →https://doi.org/10.1073/pnas.96.25.14547openalex-snapshot
Bacterial diversity within the human subgingival crevice
inferredcites →https://doi.org/10.1089/fpd.2008.0107openalex-snapshot
Bacterial Tag–Encoded FLX Amplicon Pyrosequencing (bTEFAP) for Microbiome Studies: Bacterial Diversity in the Ileum of Newly Weaned Salmonella -Infected Pigs
inferredcites →https://doi.org/10.1093/molbev/msp077openalex-snapshot
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
inferredcites →https://doi.org/10.1093/nar/gkq873openalex-snapshot
Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions
inferredcites →https://doi.org/10.1099/00207713-49-2-601openalex-snapshot
Patterns of sequence variation in two regions of the 16S rRNA multigene family of Escherichia coli
inferredcites →https://doi.org/10.1099/mic.0.25791-0openalex-snapshot
Molecular analysis of bacteria in periodontitis: evaluation of clone libraries, novel phylotypes and putative pathogens
inferredcites →https://doi.org/10.1111/j.1399-302x.2005.00255.xopenalex-snapshot
Novel subgingival bacterial phylotypes detected using multiple universal polymerase chain reaction primer sets
inferredcites →https://doi.org/10.1111/j.1462-2920.2008.01857.xopenalex-snapshot
Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure
inferredcites →https://doi.org/10.1111/j.1462-2920.2009.02051.xopenalex-snapshot
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
inferredcites →https://doi.org/10.1111/j.1601-0825.2007.01371.xopenalex-snapshot
Molecular identification of bacteria on the tongue dorsum of subjects with and without halitosis
inferredcites →https://doi.org/10.1128/aem.00592-09openalex-snapshot
Comparison of Species Richness Estimates Obtained Using Nearly Complete Fragments and Simulated Pyrosequencing-Generated Fragments in 16S rRNA Gene-Based Environmental Surveys
inferredcites →https://doi.org/10.1128/aem.03006-05openalex-snapshot
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
inferredcites →https://doi.org/10.1128/aem.62.2.625-630.1996openalex-snapshot
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
inferredcites →https://doi.org/10.1128/aem.64.10.3724-3730.1998openalex-snapshot
Bias in Template-to-Product Ratios in Multitemplate PCR
inferredcites →https://doi.org/10.1128/aem.64.11.4522-4529.1998openalex-snapshot
Kinetic Bias in Estimates of Coastal Picoplankton Community Structure Obtained by Measurements of Small-Subunit rRNA Gene PCR Amplicon Length Heterogeneity
inferredcites →https://doi.org/10.1128/aem.72.4.2837-2848.2006openalex-snapshot
Molecular Characterization of Subject-Specific Oral Microflora during Initial Colonization of Enamel
inferredcites →https://doi.org/10.1128/cmr.17.4.840-862.2004openalex-snapshot
Impact of 16S rRNA Gene Sequence Analysis for Identification of Bacteria on Clinical Microbiology and Infectious Diseases
inferredcites →https://doi.org/10.1128/jb.183.12.3770-3783.2001openalex-snapshot
Bacterial Diversity in Human Subgingival Plaque
inferredcites →https://doi.org/10.1128/jcm.00317-06openalex-snapshot
Changes in Periodontal Health Status Are Associated with Bacterial Community Shifts as Assessed by Quantitative 16S Cloning and Sequencing
inferredcites →https://doi.org/10.1128/jcm.01821-09openalex-snapshot
Response of Subgingival Bacteria to Smoking Cessation
inferredcites →https://doi.org/10.1128/jcm.43.11.5721-5732.2005openalex-snapshot
Defining the Normal Bacterial Flora of the Oral Cavity
inferredcites →https://doi.org/10.1128/jcm.43.8.3944-3955.2005openalex-snapshot
Identification of Candidate Periodontal Pathogens and Beneficial Species by Quantitative 16S Clonal Analysis
inferredcites →https://doi.org/10.1177/0022034510370026openalex-snapshot
Analyzing Endodontic Infections by Deep Coverage Pyrosequencing
inferredcites →https://doi.org/10.1177/0022034510377203openalex-snapshot
Subgingival Microbial Profiles of Smokers with Periodontitis
inferredcites →https://doi.org/10.1177/154405910808701104openalex-snapshot
Pyrosequencing analysis of the Oral Microflora of healthy adults
inferredcites →https://doi.org/10.1186/1471-2105-12-38openalex-snapshot
Removing Noise From Pyrosequenced Amplicons
inferredcites →https://doi.org/10.1186/1471-2180-9-259openalex-snapshot
Defining the healthy "core microbiome" of oral microbial communities
inferredcites →https://doi.org/10.1186/gb-2007-8-7-r143openalex-snapshot
Accuracy and quality of massively parallel DNA pyrosequencing
inferredcites →https://doi.org/10.1371/journal.pone.0007401openalex-snapshot
Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies
inferredcites →https://doi.org/10.1902/jop.2006.060026openalex-snapshot
Periodontal Status in Smokers and Never‐Smokers: Clinical Findings and Real‐Time Polymerase Chain Reaction Quantification of Putative Periodontal Pathogens
inferredcites →https://doi.org/10.3748/wjg.v16.i33.4135openalex-snapshot
Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome
inferredcites →https://doi.org/10.7275/4vng-5608openalex-snapshot
Notes on the use of data transformations
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.2139/ssrn.4639274openalex-extracted
Combined Effects of Norfloxacin and Nanoplastics on the Oxidative Stress and Gut Health of the Juvenile Horseshoe Crab Tachypleus Tridentatus
inferred← citeshttps://doi.org/10.1002/9781119062585.ch5openalex-snapshot
An introduction to metagenomic data generation, analysis, visualization, and interpretation
inferred← citeshttps://doi.org/10.1002/ajpa.25020openalex-snapshot
Technical note: A biological anthropologist's guide for applying microbiome science to studies of human and non‐human primates
inferred← citeshttps://doi.org/10.1002/jper.23-0205openalex-snapshot
Impact of surface characteristics on the peri‐implant microbiome in health and disease
inferred← citeshttps://doi.org/10.1002/jper.70098openalex-snapshot
Mapping the subgingival HerBiome and HisBiome over the human healthspan
inferred← citeshttps://doi.org/10.1002/mbo3.898openalex-snapshot
Full‐length 16S rRNA gene classification of Atlantic salmon bacteria and effects of using different 16S variable regions on community structure analysis
inferred← citeshttps://doi.org/10.1007/978-3-030-77595-7_12openalex-snapshot
The Taxonomy of Bacteria in the Genomic Era
inferred← citeshttps://doi.org/10.1007/978-3-031-82202-5_20openalex-snapshot
Cohort, Longitudinal and Cross-Sectional Studies: Periodontal Diseases
inferred← citeshttps://doi.org/10.1007/978-981-16-6005-4_10openalex-snapshot
Next-Generation Amplicon Sequencing: A Cost-Effective Method for Exploring Microbial Biodiversity
inferred← citeshttps://doi.org/10.1007/s00192-016-3165-7openalex-snapshot
Methodology for a vaginal and urinary microbiome study in women with mixed urinary incontinence
inferred← citeshttps://doi.org/10.1007/s00192-018-3683-6openalex-snapshot
The urinary microbiome in women with mixed urinary incontinence compared to similarly aged controls
inferred← citeshttps://doi.org/10.1007/s00203-018-1505-3openalex-snapshot
Insights into the human oral microbiome
inferred← citeshttps://doi.org/10.1007/s00248-013-0245-9openalex-snapshot
Dysbiosis Signature of Fecal Microbiota in Colorectal Cancer Patients
inferred← citeshttps://doi.org/10.1007/s00248-016-0857-yopenalex-snapshot
Effect of Macondo Prospect 252 Oil on Microbiota Associated with Pelagic Sargassum in the Northern Gulf of Mexico
inferred← citeshttps://doi.org/10.1007/s00248-018-1174-4openalex-snapshot
Discordance Between Resident and Active Bacterioplankton in Free-Living and Particle-Associated Communities in Estuary Ecosystem
inferred← citeshttps://doi.org/10.1007/s00253-014-5906-1openalex-snapshot
Microbial community composition and dynamics in high-temperature biogas reactors using industrial bioethanol waste as substrate
inferred← citeshttps://doi.org/10.1007/s00253-016-7410-2openalex-snapshot
Evaluation of the effects of intrapartum antibiotic prophylaxis on newborn intestinal microbiota using a sequencing approach targeted to multi hypervariable 16S rDNA regions
inferred← citeshttps://doi.org/10.1007/s00284-020-02108-xopenalex-snapshot
Impact of Initial Feeding and Molting on Tachypleus tridentatus Gut Microbiota
inferred← citeshttps://doi.org/10.1007/s00300-016-1958-2openalex-snapshot
Bacterial community structure in intertidal sediments of Fildes Peninsula, maritime Antarctica
inferred← citeshttps://doi.org/10.1007/s00374-016-1169-6openalex-snapshot
Bacterial community composition in the rhizosphere of maize cultivars widely grown in different decades
inferred← citeshttps://doi.org/10.1007/s00792-014-0715-0openalex-snapshot
Detection and analysis of elusive members of a novel and diverse archaeal community within a thermal spring streamer consortium
inferred← citeshttps://doi.org/10.1007/s10295-019-02154-wopenalex-snapshot
Formate-removing inoculum dominated by Methanobacterium congolense supports succinate production from crude glycerol fermentation
inferred← citeshttps://doi.org/10.1007/s10493-017-0186-yopenalex-snapshot
Assessment of bacterial diversity in Hyalomma aegyptium, H. marginatum and H. excavatum ticks through tag-encoded pyrosequencing
inferred← citeshttps://doi.org/10.1007/s10620-022-07812-1openalex-snapshot
Cystic Fibrosis-Related Gut Dysbiosis: A Systematic Review
inferred← citeshttps://doi.org/10.1007/s11274-013-1533-8openalex-snapshot
Environmental context shapes the bacterial community structure associated to Peltigera cyanolichens growing in Tierra del Fuego, Chile
inferred← citeshttps://doi.org/10.1007/s11356-019-07534-4openalex-snapshot
N2O and CO2 emissions from a dryland wheat cropping system with long-term N fertilization and their relationships with soil C, N, and bacterial community
inferred← citeshttps://doi.org/10.1007/s11802-022-5205-xopenalex-snapshot
Effect of Probiotics on Juvenile Tachypleus tridentatus Gut Microbiota
inferred← citeshttps://doi.org/10.1007/s11882-013-0355-yopenalex-snapshot
Asthma Microbiome Studies and the Potential for New Therapeutic Strategies
inferred← citeshttps://doi.org/10.1007/s12275-015-4601-yopenalex-snapshot
Improved pipeline for reducing erroneous identification by 16S rRNA sequences using the Illumina MiSeq platform
inferred← citeshttps://doi.org/10.1007/s13213-014-0969-xopenalex-snapshot
Living with detergents: pyrosequencing-based assessment of bacterial community structures in soils subjected for decades to contamination by detergents
inferred← citeshttps://doi.org/10.1016/b978-0-12-397169-2.00053-6openalex-snapshot
Bacteriology of Periodontal Diseases
inferred← citeshttps://doi.org/10.1016/b978-0-12-410472-3.00002-6openalex-snapshot
Long-Read, Single Molecule, Real-Time (SMRT) DNA Sequencing for Metagenomic Applications
inferred← citeshttps://doi.org/10.1016/b978-0-12-410515-7.00003-2openalex-snapshot
Our Second Genome—Human Metagenome
inferred← citeshttps://doi.org/10.1016/b978-0-12-824448-7.00026-7openalex-snapshot
Next-generation omics technologies to explore microbial diversity
inferred← citeshttps://doi.org/10.1016/b978-0-323-56800-5.00006-0openalex-snapshot
The Gut Microbiome and Ankylosing Spondylitis
inferred← citeshttps://doi.org/10.1016/j.agee.2018.01.034openalex-snapshot
Rubber plantation ageing controls soil biodiversity after land conversion from cassava
inferred← citeshttps://doi.org/10.1016/j.ajog.2019.08.011openalex-snapshot
Defining the relationship between vaginal and urinary microbiomes
inferred← citeshttps://doi.org/10.1016/j.apenergy.2016.08.177openalex-snapshot
Evaluation of long-term performance of sediment microbial fuel cells and the role of natural resources
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2017.09.031openalex-snapshot
Intestinal microbiome affects the distinctive flavor of Chinese mitten crabs in commercial farms
inferred← citeshttps://doi.org/10.1016/j.biortech.2013.09.044openalex-snapshot
Polyhydroxybutyrate production by direct use of waste activated sludge in phosphorus-limited fed-batch culture
inferred← citeshttps://doi.org/10.1016/j.cej.2014.12.095openalex-snapshot
Microbial community structure of anoxic–oxic-settling-anaerobic sludge reduction process revealed by 454-pyrosequencing
inferred← citeshttps://doi.org/10.1016/j.cemconres.2014.10.025openalex-snapshot
An innovative approach to reproduce the biodeterioration of industrial cementitious products in a sewer environment. Part I: Test design
inferred← citeshttps://doi.org/10.1016/j.chnaes.2018.02.001openalex-snapshot
Phylogenetic diversity of bacteria in the Arctic Ocean sediments neighboring the Bering Strait
inferred← citeshttps://doi.org/10.1016/j.dental.2020.05.016openalex-snapshot
Effects of multiple implantations of titanium healing abutments: Surface characteristics and microbial colonization
inferred← citeshttps://doi.org/10.1016/j.fertnstert.2016.11.028openalex-snapshot
Investigation of the microbiota of the reproductive tract in women undergoing a total hysterectomy and bilateral salpingo-oopherectomy
inferred← citeshttps://doi.org/10.1016/j.foodchem.2012.04.110openalex-snapshot
Susceptibility of anthocyanins to ex vivo degradation in human saliva
inferred← citeshttps://doi.org/10.1016/j.foodres.2019.108664openalex-snapshot
Leaf-associated microbiota on perilla (Perilla frutescens var. frutescens) cultivated in South Korea to detect the potential risk of food poisoning
inferred← citeshttps://doi.org/10.1016/j.heliyon.2017.e00370openalex-snapshot
An efficient strategy using k- mers to analyse 16S rRNA sequences
inferred← citeshttps://doi.org/10.1016/j.ijantimicag.2016.08.006openalex-snapshot
Antimicrobial growth promoter use in livestock: a requirement to understand their modes of action to develop effective alternatives
inferred← citeshttps://doi.org/10.1016/j.ijfoodmicro.2015.05.010openalex-snapshot
The predominance of Lactobacillus sanfranciscensis in French organic sourdoughs and its impact on related bread characteristics
inferred← citeshttps://doi.org/10.1016/j.ijfoodmicro.2017.06.016openalex-snapshot
Microbial community profiling of fresh basil and pitfalls in taxonomic assignment of enterobacterial pathogenic species based upon 16S rRNA amplicon sequencing
inferred← citeshttps://doi.org/10.1016/j.ijsrc.2022.02.001openalex-snapshot
Ability of soil bacterial composition as an indicator of levels of soil erosion in a badland
inferred← citeshttps://doi.org/10.1016/j.imlet.2014.08.017openalex-snapshot
The oral microbiome and the immunobiology of periodontal disease and caries
inferred← citeshttps://doi.org/10.1016/j.infect.2015.10.010openalex-snapshot
Microbiota bacteriana asociada al papel moneda de circulación en Colombia
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2024.133801openalex-snapshot
Combined effects of norfloxacin and polystyrene nanoparticles on the oxidative stress and gut health of the juvenile horseshoe crab Tachypleus tridentatus
inferred← citeshttps://doi.org/10.1016/j.joen.2017.11.019openalex-snapshot
Microbial Analysis of Endodontic Infections in Root-filled Teeth with Apical Periodontitis before and after Irrigation Using Pyrosequencing
inferred← citeshttps://doi.org/10.1016/j.jphotobiol.2016.03.006openalex-snapshot
Effect of photoactivated disinfection using light in the blue spectrum
inferred← citeshttps://doi.org/10.1016/j.marpolbul.2018.08.010openalex-snapshot
Study on the bacterial and archaeal community structure and diversity of activated sludge from three wastewater treatment plants
inferred← citeshttps://doi.org/10.1016/j.meegid.2012.01.011openalex-snapshot
Molecular methods for pathogen and microbial community detection and characterization: Current and potential application in diagnostic microbiology
inferred← citeshttps://doi.org/10.1016/j.micres.2016.04.007openalex-snapshot
Yucatán in black and red: Linking edaphic analysis and pyrosequencing-based assessment of bacterial and fungal community structures in the two main kinds of soil of Yucatán State
inferred← citeshttps://doi.org/10.1016/j.mimet.2013.08.007openalex-snapshot
Minimization of chloroplast contamination in 16S rRNA gene pyrosequencing of insect herbivore bacterial communities
inferred← citeshttps://doi.org/10.1016/j.neubiorev.2021.02.044openalex-snapshot
Mining microbes for mental health: Determining the role of microbial metabolic pathways in human brain health and disease
inferred← citeshttps://doi.org/10.1016/j.pdpdt.2012.12.001openalex-snapshot
Effect of photoactivated disinfection with a light-emitting diode on bacterial species and biofilms associated with periodontitis and peri-implantitis
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.177823openalex-snapshot
Enriching Fluorotelomer Carboxylic Acids-Degrading Consortia from Sludges and Soils
inferred← citeshttps://doi.org/10.1016/j.tifs.2025.105113openalex-snapshot
Sequence based characterization of microbial communities in food: The panacea for smart detection of food microbes or dirty deeds done dirt cheap?
inferred← citeshttps://doi.org/10.1016/j.tim.2015.08.009openalex-snapshot
Microbial Malaise: How Can We Classify the Microbiome?
inferred← citeshttps://doi.org/10.1016/j.ttbdis.2017.02.002openalex-snapshot
Comparison of bacterial 16S rRNA variable regions for microbiome surveys of ticks
inferred← citeshttps://doi.org/10.1016/j.watres.2013.04.010openalex-snapshot
Industrial activated sludge exhibit unique bacterial community composition at high taxonomic ranks
inferred← citeshttps://doi.org/10.1016/j.watres.2015.12.050openalex-snapshot
Effects of dissolved oxygen on performance and microbial community structure in a micro-aerobic hydrolysis sludge in situ reduction process
inferred← citeshttps://doi.org/10.1016/j.watres.2020.116677openalex-snapshot
An assessment of the persistence of putative pathogenic bacteria in chloraminated water distribution systems
inferred← citeshttps://doi.org/10.1016/j.ygeno.2020.09.006openalex-snapshot
Sediment-associated bacterial community and predictive functionalities are influenced by choice of 16S ribosomal RNA hypervariable region(s): An amplicon-based diversity study
inferred← citeshttps://doi.org/10.1016/s2095-3119(15)61147-9openalex-snapshot
Wheat, maize and sunflower cropping systems selectively influence bacteria community structure and diversity in their and succeeding crop's rhizosphere
inferred← citeshttps://doi.org/10.1017/s1751731114000056openalex-snapshot
Microbial biodiversity of the liquid fraction of rumen content from lactating cows
inferred← citeshttps://doi.org/10.1021/acsestwater.5c00009openalex-snapshot
Anaerobic Biotransformation and Biodefluorination of 6:2 Fluorotelomer Carboxylic Acid by Biosolids under the Nitrate-Reducing Condition
inferred← citeshttps://doi.org/10.1038/ijos.2013.15openalex-snapshot
Characterization of oral bacterial diversity of irradiated patients by high-throughput sequencing
inferred← citeshttps://doi.org/10.1038/ismej.2014.114openalex-snapshot
The subgingival microbiome of clinically healthy current and never smokers
inferred← citeshttps://doi.org/10.1038/ismej.2017.73openalex-snapshot
A tale of two risks: smoking, diabetes and the subgingival microbiome
inferred← citeshttps://doi.org/10.1038/ncomms9285openalex-snapshot
Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores
inferred← citeshttps://doi.org/10.1038/npjmgrav.2016.7openalex-snapshot
Four-year bacterial monitoring in the International Space Station—Japanese Experiment Module “Kibo” with culture-independent approach
inferred← citeshttps://doi.org/10.1038/s41396-018-0215-9openalex-snapshot
Metagenomics reveals functional synergy and novel polysaccharide utilization loci in the Castor canadensis fecal microbiome
inferred← citeshttps://doi.org/10.1038/s41423-018-0179-8openalex-snapshot
Of ethnicity, environment, and microbiota
inferred← citeshttps://doi.org/10.1038/s41585-018-0104-zopenalex-snapshot
Community profiling of the urinary microbiota: considerations for low-biomass samples
inferred← citeshttps://doi.org/10.1038/s41598-018-35329-zopenalex-snapshot
Characterization of human breast tissue microbiota from core needle biopsies through the analysis of multi hypervariable 16S-rRNA gene regions
inferred← citeshttps://doi.org/10.1038/s41598-019-42694-wopenalex-snapshot
Uncovering the hidden marine sponge microbiome by applying a multi-primer approach
inferred← citeshttps://doi.org/10.1038/s41598-019-55859-4openalex-snapshot
Time-course relationship between environmental factors and microbial diversity in tobacco soil
inferred← citeshttps://doi.org/10.1038/s41598-020-80372-4openalex-snapshot
Parents with periodontitis impact the subgingival colonization of their offspring
inferred← citeshttps://doi.org/10.1038/s41598-020-80826-9openalex-snapshot
The effect of taxonomic classification by full-length 16S rRNA sequencing with a synthetic long-read technology
inferred← citeshttps://doi.org/10.1038/sdata.2018.68openalex-snapshot
The effects of sequencing platforms on phylogenetic resolution in 16 S rRNA gene profiling of human feces
inferred← citeshttps://doi.org/10.1038/srep20701openalex-snapshot
Gastric microbiota and predicted gene functions are altered after subtotal gastrectomy in patients with gastric cancer
inferred← citeshttps://doi.org/10.1038/srep26650openalex-snapshot
Genomic features of uncultured methylotrophs in activated-sludge microbiomes grown under different enrichment procedures
inferred← citeshttps://doi.org/10.1038/srep29123openalex-snapshot
PhyloToAST: Bioinformatics tools for species-level analysis and visualization of complex microbial datasets
inferred← citeshttps://doi.org/10.1038/srep30388openalex-snapshot
Smoking, pregnancy and the subgingival microbiome
inferred← citeshttps://doi.org/10.1039/c6em00413jopenalex-snapshot
Microbial rRNA sequencing analysis of evaporative cooler indoor environments located in the Great Basin Desert region of the United States
inferred← citeshttps://doi.org/10.1073/pnas.1107435109openalex-snapshot
Direct sampling of cystic fibrosis lungs indicates that DNA-based analyses of upper-airway specimens can misrepresent lung microbiota
inferred← citeshttps://doi.org/10.1080/14787210.2017.1349609openalex-snapshot
Respiratory microbiota and lower respiratory tract disease
inferred← citeshttps://doi.org/10.1080/20002297.2019.1586413openalex-snapshot
Analysis of oral bacterial communities: comparison of HOMINGS with a tree-based approach implemented in QIIME
inferred← citeshttps://doi.org/10.1093/dnares/dst052openalex-snapshot
Design and Experimental Application of a Novel Non-Degenerate Universal Primer Set that Amplifies Prokaryotic 16S rRNA Genes with a Low Possibility to Amplify Eukaryotic rRNA Genes
inferred← citeshttps://doi.org/10.1093/ee/nvv044openalex-snapshot
Do Bacterial Symbionts Govern Aphid's Dropping Behavior?
inferred← citeshttps://doi.org/10.1093/femsec/fix029openalex-snapshot
Reconciliation between operational taxonomic units and species boundaries
inferred← citeshttps://doi.org/10.1093/femspd/ftw083openalex-snapshot
16S rRNA analysis provides evidence of biofilms on all components of three infected periprosthetic knees including permanent braided suture
inferred← citeshttps://doi.org/10.1093/infdis/jiu256openalex-snapshot
Impact of Experimental Hookworm Infection on the Human Gut Microbiota
inferred← citeshttps://doi.org/10.1099/jmm.0.001756openalex-snapshot
Microbiome depiction through user-adapted bioinformatic pipelines and parameters
inferred← citeshttps://doi.org/10.1101/674069openalex-snapshot
The succession pattern of bacterial diversity in compost using pig manure mixed with wood chips analyzed by 16S rRNA gene analysis
inferred← citeshttps://doi.org/10.1109/mdat.2013.2290116openalex-snapshot
Large-Scale Pairwise Sequence Alignments on a Large-Scale GPU Cluster
inferred← citeshttps://doi.org/10.1109/saahpc.2012.15openalex-snapshot
GPU Acceleration of Pyrosequencing Noise Removal
inferred← citeshttps://doi.org/10.1111/1749-4877.12948openalex-snapshot
Stress Response of the Juvenile Tri‐Spine Horseshoe Crab Tachypleus tridentatus to Hypoxia: Insights from Phenotypic, Metabolomic, and Microbial Analyses
inferred← citeshttps://doi.org/10.1111/1755-0998.13097openalex-snapshot
Exploring the accuracy of amplicon‐based internal transcribed spacer markers for a fungal community
inferred← citeshttps://doi.org/10.1111/apm.12015openalex-snapshot
Methanogenic archaea in subgingival sites: a review
inferred← citeshttps://doi.org/10.1111/clr.14361openalex-snapshot
Impact of Glycine Powder Air‐Abrasive Debridement on Peri‐Implant Mucositis: A Randomized Control Trial of Clinical, Microbial, and Immunological Changes
inferred← citeshttps://doi.org/10.1111/iej.13389openalex-snapshot
Microbial ecology and predicted metabolic pathways in various oral environments from patients with acute endodontic infections
inferred← citeshttps://doi.org/10.1111/iej.13656openalex-snapshot
A critical analysis of research methods and experimental models to study the root canal microbiome
inferred← citeshttps://doi.org/10.1111/j.1574-6968.2011.02434.xopenalex-snapshot
Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons
inferred← citeshttps://doi.org/10.1111/j.1600-051x.2012.01856.xopenalex-snapshot
Pyrosequencing reveals unique microbial signatures associated with healthy and failing dental implants
inferred← citeshttps://doi.org/10.1111/j.1600-0765.2012.01485.xopenalex-snapshot
Levels of Selenomonas species in generalized aggressive periodontitis
inferred← citeshttps://doi.org/10.1111/j.2041-1014.2012.00642.xopenalex-snapshot
Using high throughput sequencing to explore the biodiversity in oral bacterial communities
inferred← citeshttps://doi.org/10.1111/jcpe.12862openalex-snapshot
Shift in the subgingival microbiome following scaling and root planing in generalized aggressive periodontitis
inferred← citeshttps://doi.org/10.1111/jcpe.13815openalex-snapshot
Parents with periodontitis drive the early acquisition of dysbiotic microbiomes in their offspring
inferred← citeshttps://doi.org/10.1111/jcpe.70063openalex-snapshot
Dysbiosis‐Mediated Inflammation: A Pathophysiological Link Between Rheumatoid Arthritis and Periodontitis
inferred← citeshttps://doi.org/10.1111/jopr.13270openalex-snapshot
Microbiological Profile and Human Immune Response Associated with Peri‐Implantitis: A Systematic Review
inferred← citeshttps://doi.org/10.1111/jopr.13743openalex-snapshot
Microbiological profile of peri‐implantitis: Analyses of peri‐implant microbiome
inferred← citeshttps://doi.org/10.1111/jre.12597openalex-snapshot
Smoking habit modulates peri‐implant microbiome: A case‐control study
inferred← citeshttps://doi.org/10.1111/mec.12611openalex-snapshot
Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes
inferred← citeshttps://doi.org/10.1111/odi.12657openalex-snapshot
Dysbiosis of oral buccal mucosa microbiota in patients with oral lichen planus
inferred← citeshttps://doi.org/10.1111/prd.12010openalex-snapshot
Lessons learned and unlearned in periodontal microbiology
inferred← citeshttps://doi.org/10.1111/prd.12358openalex-snapshot
Did Omics change periodontal therapy?
inferred← citeshttps://doi.org/10.1111/prd.12359openalex-snapshot
Optimizing the quality of clinical studies on oral microbiome: A practical guide for planning, performing, and reporting
inferred← citeshttps://doi.org/10.1128/aem.00513-14openalex-snapshot
Diversity and Transport of Microorganisms in Intertidal Sands of the California Coast
inferred← citeshttps://doi.org/10.1128/aem.01826-15openalex-snapshot
Topographical Mapping of the Rainbow Trout (Oncorhynchus mykiss) Microbiome Reveals a Diverse Bacterial Community with Antifungal Properties in the Skin
inferred← citeshttps://doi.org/10.1128/aem.02414-13openalex-snapshot
Analysis of the Gull Fecal Microbial Community Reveals the Dominance of Catellicoccus marimammalium in Relation to Culturable Enterococci
inferred← citeshttps://doi.org/10.1128/aem.03534-14openalex-snapshot
High-Resolution Taxonomic Profiling of the Subgingival Microbiome for Biomarker Discovery and Periodontitis Diagnosis
inferred← citeshttps://doi.org/10.1128/jcm.01678-14openalex-snapshot
Single-Molecule Long-Read 16S Sequencing To Characterize the Lung Microbiome from Mechanically Ventilated Patients with Suspected Pneumonia
inferred← citeshttps://doi.org/10.1128/mra.01230-24openalex-snapshot
Complete genome sequence of Burkholderia contaminans PCR-C_Y9 isolated from Pericarpium citri reticulatae 'Chachiensis'
inferred← citeshttps://doi.org/10.1128/msystems.00006-17openalex-snapshot
Moderate Exercise Has Limited but Distinguishable Effects on the Mouse Microbiome
inferred← citeshttps://doi.org/10.1128/msystems.00127-16openalex-snapshot
Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research
inferred← citeshttps://doi.org/10.1128/msystems.00518-21openalex-snapshot
Species-Level Resolution of Female Bladder Microbiota from 16S rRNA Amplicon Sequencing
inferred← citeshttps://doi.org/10.1128/spectrum.04327-22openalex-snapshot
Characteristics of the Salivary Microbiota in Periodontal Diseases and Potential Roles of Individual Bacterial Species To Predict the Severity of Periodontal Disease
inferred← citeshttps://doi.org/10.1139/cjm-2014-0503openalex-snapshot
Pyrosequencing analysis of free-living and attached bacterial communities in Meiliang Bay, Lake Taihu, a large eutrophic shallow lake in China
inferred← citeshttps://doi.org/10.1139/cjm-2017-0100openalex-snapshot
Degenerate ITS7 primer enhances oomycete community coverage and PCR sensitivity to Aphanomyces species, economically important plant pathogens
inferred← citeshttps://doi.org/10.1155/2013/958719openalex-snapshot
Microbial Diversity in the Era of Omic Technologies
inferred← citeshttps://doi.org/10.1155/2015/480386openalex-snapshot
Perspective for Aquaponic Systems: “ Omic ” Technologies for Microbial Community Analysis
inferred← citeshttps://doi.org/10.1155/2021/8876926openalex-snapshot
Isolation and Characterization of Gram-Negative Bacterial Species from Pasteurized Dairy Products: Potential Risk to Consumer Health
inferred← citeshttps://doi.org/10.11606/t.42.2018.tde-26032018-164037openalex-snapshot
Desenvolvimento e validação de método para a identificação de micro-organismos metabolicamente ativos em biofilmes de amostras ambientais através da análise de rRNA 16S.
inferred← citeshttps://doi.org/10.1177/0022034513504950openalex-snapshot
Patient-specific Analysis of Periodontal and Peri-implant Microbiomes
inferred← citeshttps://doi.org/10.1177/0022034515590581openalex-snapshot
The Influence of Smoking on the Peri-Implant Microbiome
inferred← citeshttps://doi.org/10.1177/0022034520906842openalex-snapshot
Subgingival Host-Microbial Interactions in Hyperglycemic Individuals
inferred← citeshttps://doi.org/10.1177/00220345211015948openalex-snapshot
Sources of SARS-CoV-2 and Other Microorganisms in Dental Aerosols
inferred← citeshttps://doi.org/10.1186/0717-6287-47-67openalex-snapshot
Acidobacteriaappear to dominate the microbiome of two sympatric Caribbean Sponges and one Zoanthid
inferred← citeshttps://doi.org/10.1186/1471-2105-14-79openalex-snapshot
Comparative analysis of microbiome measurement platforms using latent variable structural equation modeling
inferred← citeshttps://doi.org/10.1186/2049-2618-2-43openalex-snapshot
Characterization and comparison of bacterial communities in benign vocal fold lesions
inferred← citeshttps://doi.org/10.1186/s12866-017-0927-4openalex-snapshot
Optimisation of methods for bacterial skin microbiome investigation: primer selection and comparison of the 454 versus MiSeq platform
inferred← citeshttps://doi.org/10.1186/s12898-016-0068-xopenalex-snapshot
A metabarcoding framework for facilitated survey of endolithic phototrophs with tufA
inferred← citeshttps://doi.org/10.1186/s12903-023-02917-zopenalex-snapshot
Pre-treatment oral microbiome analysis and salivary Stephan curve kinetics in white spot lesion development in orthodontic patients wearing fixed appliances. A pilot study
inferred← citeshttps://doi.org/10.1186/s13071-017-2579-5openalex-snapshot
Reptile-associated Borrelia species in the goanna tick (Bothriocroton undatum) from Sydney, Australia
inferred← citeshttps://doi.org/10.1186/s13099-025-00750-zopenalex-snapshot
Gut microbiome-based machine learning model for early colorectal cancer and adenoma screening
inferred← citeshttps://doi.org/10.1186/s40168-017-0248-8openalex-snapshot
Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis
inferred← citeshttps://doi.org/10.1186/s40168-018-0443-2openalex-snapshot
Characterizing oral microbial communities across dentition states and colonization niches
inferred← citeshttps://doi.org/10.1186/s40168-020-00841-wopenalex-snapshot
Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets
inferred← citeshttps://doi.org/10.1186/s40168-021-01059-0openalex-snapshot
Identifying biases and their potential solutions in human microbiome studies
inferred← citeshttps://doi.org/10.1186/s42523-023-00239-7openalex-snapshot
The impact of culture systems on the gut microbiota and gut metabolome of bighead carp (Hypophthalmichthys nobilis)
inferred← citeshttps://doi.org/10.1201/9780429276170-7openalex-snapshot
Molecular Techniques for Detection of Foodborne Pathogens: Salmonella and Bacillus cereus
inferred← citeshttps://doi.org/10.1201/b18618-4openalex-snapshot
Taxonomic Precision of Different Hypervariable Regions of 16S rRNA Gene and Annotation Methods for Functional Bacterial Groups in Biological Wastewater Treatment
inferred← citeshttps://doi.org/10.12677/qrb.2014.12007openalex-snapshot
The Application of 16SrRNA Sequences Analysis in Oral Microbial Community
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1002863openalex-snapshot
A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets
inferred← citeshttps://doi.org/10.1371/journal.pone.0034233openalex-snapshot
Increased Gut Permeability and Microbiota Change Associate with Mesenteric Fat Inflammation and Metabolic Dysfunction in Diet-Induced Obese Mice
inferred← citeshttps://doi.org/10.1371/journal.pone.0044105openalex-snapshot
Exploring Bacterial Diversity in Hospital Environments by GS-FLX Titanium Pyrosequencing
inferred← citeshttps://doi.org/10.1371/journal.pone.0053649openalex-snapshot
Biased Diversity Metrics Revealed by Bacterial 16S Pyrotags Derived from Different Primer Sets
inferred← citeshttps://doi.org/10.1371/journal.pone.0057782openalex-snapshot
Detection of Transient Bacteraemia following Dental Extractions by 16S rDNA Pyrosequencing: A Pilot Study
inferred← citeshttps://doi.org/10.1371/journal.pone.0061516openalex-snapshot
Investigation of the Effect of Type 2 Diabetes Mellitus on Subgingival Plaque Microbiota by High-Throughput 16S rDNA Pyrosequencing
inferred← citeshttps://doi.org/10.1371/journal.pone.0066934openalex-snapshot
Characterization of the Gut-Associated Microbiome in Inflammatory Pouch Complications Following Ileal Pouch-Anal Anastomosis
inferred← citeshttps://doi.org/10.1371/journal.pone.0071360openalex-snapshot
The Effect of Primer Choice and Short Read Sequences on the Outcome of 16S rRNA Gene Based Diversity Studies
inferred← citeshttps://doi.org/10.1371/journal.pone.0076185openalex-snapshot
Taxonomic Precision of Different Hypervariable Regions of 16S rRNA Gene and Annotation Methods for Functional Bacterial Groups in Biological Wastewater Treatment
inferred← citeshttps://doi.org/10.1371/journal.pone.0077599openalex-snapshot
An In Vitro Model of the Horse Gut Microbiome Enables Identification of Lactate-Utilizing Bacteria That Differentially Respond to Starch Induction
inferred← citeshttps://doi.org/10.1371/journal.pone.0084438openalex-snapshot
Archaea Appear to Dominate the Microbiome of Inflatella pellicula Deep Sea Sponges
inferred← citeshttps://doi.org/10.1371/journal.pone.0095567openalex-snapshot
Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia
inferred← citeshttps://doi.org/10.1371/journal.pone.0099722openalex-snapshot
The Bias Associated with Amplicon Sequencing Does Not Affect the Quantitative Assessment of Bacterial Community Dynamics
inferred← citeshttps://doi.org/10.1371/journal.pone.0140725openalex-snapshot
Characterization of Bacterial Communities Associated with the Tyrian Purple Producing Gland in a Marine Gastropod
inferred← citeshttps://doi.org/10.1371/journal.pone.0148047openalex-snapshot
Development of an Analysis Pipeline Characterizing Multiple Hypervariable Regions of 16S rRNA Using Mock Samples
inferred← citeshttps://doi.org/10.1371/journal.pone.0184223openalex-snapshot
Changes in soil microbial communities after 10 years of winter wheat cultivation versus fallow in an organic-poor soil in the Loess Plateau of China
inferred← citeshttps://doi.org/10.1371/journal.pone.0186161openalex-snapshot
Modified RNA-seq method for microbial community and diversity analysis using rRNA in different types of environmental samples
inferred← citeshttps://doi.org/10.1371/journal.pone.0209887openalex-snapshot
Seabird and pinniped shape soil bacterial communities of their settlements in Cape Shirreff, Antarctica
inferred← citeshttps://doi.org/10.1371/journal.pone.0331145openalex-snapshot
FAVABEAN and FALAPhyl: Open-source pipelines for scalable 16s rRNA microbiome data processing and visualization
inferred← citeshttps://doi.org/10.14814/phy2.15254openalex-snapshot
Obesity influences composition of salivary and fecal microbiota and impacts the interactions between bacterial taxa
inferred← citeshttps://doi.org/10.1590/0001-3765202120190183openalex-snapshot
Structure and diversity of bacterial community in semiarid soils cultivated with prickly-pear cactus (Opuntia ficus-indica (L.) Mill.)
inferred← citeshttps://doi.org/10.1603/en12260openalex-snapshot
Low-Level Detection ofCandidatusLiberibacter Solanacearum inBactericera cockerelli(Hemiptera: Triozidae) by 16s rRna Pyrosequencing: Table 1.
inferred← citeshttps://doi.org/10.17957/ijab/15.0511openalex-snapshot
Bacillus subtilis N3 as a Biocontrol Agent for Curvularia lunata and its Antifungal Protein Properties
inferred← citeshttps://doi.org/10.18174/274416openalex-snapshot
Community and genomic analysis of the human small intestine microbiota
inferred← citeshttps://doi.org/10.1902/jop.2017.160542openalex-snapshot
Furcation Therapy With Enamel Matrix Derivative: Effects on the Subgingival Microbiome
inferred← citeshttps://doi.org/10.2106/jbjs.22.00315openalex-snapshot
Application of Nucleic Acid-Based Strategies to Detect Infectious Pathogens in Orthopaedic Implant-Related Infection
inferred← citeshttps://doi.org/10.21203/rs.3.rs-100088/v1openalex-snapshot
16s rRNA Lung Microbiota Study in Mechanically Ventilated Patient: A Pilot Study
inferred← citeshttps://doi.org/10.21203/rs.3.rs-4474939/v1openalex-snapshot
Unique region of 16S rRNA gene of Mycobacterium tuberculosis complex sequences isolated from pulmonary tuberculosis patients in Surabaya, Indonesia
inferred← citeshttps://doi.org/10.22175/mmb.20022openalex-snapshot
Gut Microbiota and Advances in Microbiome Sequencing-Based Technologies: Opportunities for Potential Biologics Discovery in Meat Animals
inferred← citeshttps://doi.org/10.26481/dis.20180301dtopenalex-snapshot
Microbiota profiling in gastrointestinal health and disease
inferred← citeshttps://doi.org/10.31390/gradschool_theses.2877openalex-snapshot
The Distribution and Diversity of Functional Gene Pathways Controlling Sulfur Speciation in Lower Kane Cave, Wyoming
inferred← citeshttps://doi.org/10.31390/gradschool_theses.4269openalex-snapshot
Longitudinal Assessment of Shifting Microbial Community Composition in Sandy Beaches Following the 2010 Deepwater Horizon Oil Spill and Remediation Efforts
inferred← citeshttps://doi.org/10.3354/ame01758openalex-snapshot
River bacterioplankton community responses to a high inflow event
inferred← citeshttps://doi.org/10.3354/dao03432openalex-snapshot
Technical pitfalls that bias comparative microbial community analyses of aquatic disease Ian Hewson*
inferred← citeshttps://doi.org/10.3382/ps.2014-03974openalex-snapshot
Spatial heterogeneity and stability of bacterial community in the gastrointestinal tracts of broiler chickens
inferred← citeshttps://doi.org/10.3389/fmicb.2013.00189openalex-snapshot
Microbial activity in the marine deep biosphere: progress and prospects
showing the first 200 of 252 · page through all 252
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.