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Intestinal Microbiota in Healthy Adults: Temporal Analysis Reveals Individual and Common Core and Relation to Intestinal Symptoms

https://doi.org/10.1371/journal.pone.0023035

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Outgoing claims: the papers this work cites, builds on, or argues with.

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PCR DGGE and RT-PCR DGGE show diversity and short-term temporal stability in the Clostridium coccoides–Eubacterium rectale group in the human intestinal microbiota

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Temperature Gradient Gel Electrophoresis Analysis of 16S rRNA from Human Fecal Samples Reveals Stable and Host-Specific Communities of Active Bacteria

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Methanogenic archaea in adult human faecal samples are inversely related to butyrate concentration

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Association of symptoms with gastrointestinal microbiota in irritable bowel syndrome

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inferred← citeshttps://doi.org/10.1016/j.yclnex.2016.01.002openalex-snapshot

The microbiota as a component of the celiac disease and non-celiac gluten sensitivity

inferred← citeshttps://doi.org/10.1016/j.ynpai.2021.100072openalex-snapshot

Pain after upper limb surgery under peripheral nerve block is associated with gut microbiome composition and diversity

inferred← citeshttps://doi.org/10.1017/gmb.2023.7openalex-snapshot

The gut microbiota-neuroimmune crosstalk and neuropathic pain: a scoping review

inferred← citeshttps://doi.org/10.1017/s0007114514001135openalex-snapshot

Exploring the effects of galacto-oligosaccharides on the gut microbiota of healthy adults receiving amoxicillin treatment

inferred← citeshttps://doi.org/10.1017/s0029665114000627openalex-snapshot

Intestinal microbiota during early life – impact on health and disease

inferred← citeshttps://doi.org/10.1017/s0029665116000021openalex-snapshot

Altered gastrointestinal microbiota in irritable bowel syndrome and its modification by diet: probiotics, prebiotics and the low FODMAP diet

inferred← citeshttps://doi.org/10.1021/acs.jafc.8b05408openalex-snapshot

Daily Consumption of Orange Juice from Citrus sinensis L. Osbeck cv. Cara Cara and cv. Bahia Differently Affects Gut Microbiota Profiling as Unveiled by an Integrated Meta-Omics Approach

inferred← citeshttps://doi.org/10.1021/acs.jcim.5c00791openalex-snapshot

Glycan Substructure Mining Tool: An Updated and Convenient Method Focused on Gut and Pathogenic Microbiota for Glycan Research

inferred← citeshttps://doi.org/10.1021/jf4029046openalex-snapshot

Emerging Aspects of Food and Nutrition on Gut Microbiota

inferred← citeshttps://doi.org/10.1024/1661-8157/a002856openalex-snapshot

CME

inferred← citeshttps://doi.org/10.1038/ajg.2012.287openalex-snapshot

Quantitative Profiling of Gut Microbiota of Children With Diarrhea-Predominant Irritable Bowel Syndrome

inferred← citeshttps://doi.org/10.1038/ajg.2014.73openalex-snapshot

Analyzing the Human Microbiome: A “How To” guide for Physicians

inferred← citeshttps://doi.org/10.1038/ismej.2012.146openalex-snapshot

Microbiota conservation and BMI signatures in adult monozygotic twins

inferred← citeshttps://doi.org/10.1038/ismej.2014.13openalex-snapshot

Reset of a critically disturbed microbial ecosystem: faecal transplant in recurrent Clostridium difficile infection

inferred← citeshttps://doi.org/10.1038/ismej.2014.63openalex-snapshot

Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men

inferred← citeshttps://doi.org/10.1038/ismej.2015.177openalex-snapshot

Discordant temporal development of bacterial phyla and the emergence of core in the fecal microbiota of young children

inferred← citeshttps://doi.org/10.1038/mi.2016.97openalex-snapshot

The rectal mucosa and condomless receptive anal intercourse in HIV-negative MSM: implications for HIV transmission and prevention

inferred← citeshttps://doi.org/10.1038/nrgastro.2012.44openalex-snapshot

Techniques used to characterize the gut microbiota: a guide for the clinician

inferred← citeshttps://doi.org/10.1038/nrgastro.2014.89openalex-snapshot

Functional brain imaging in gastroenterology: to new beginnings

inferred← citeshttps://doi.org/10.1038/nrmicro2876openalex-snapshot

The interplay between the intestinal microbiota and the brain

inferred← citeshttps://doi.org/10.1038/nrurol.2015.292openalex-snapshot

The interplay of extracellular matrix and microbiome in urothelial bladder cancer

inferred← citeshttps://doi.org/10.1038/s41366-019-0336-xopenalex-snapshot

Metabolic improvement in obese patients after duodenal–jejunal exclusion is associated with intestinal microbiota composition changes

inferred← citeshttps://doi.org/10.1038/s41390-020-01350-0openalex-snapshot

Early probiotic supplementation with B. infantis in breastfed infants leads to persistent colonization at 1 year

inferred← citeshttps://doi.org/10.1038/s41522-018-0065-2openalex-snapshot

GePMI: A statistical model for personal intestinal microbiome identification

inferred← citeshttps://doi.org/10.1038/s41522-024-00561-1openalex-snapshot

Transient colonizing microbes promote gut dysbiosis and functional impairment

inferred← citeshttps://doi.org/10.1038/s41538-023-00195-1openalex-snapshot

Evaluating the prebiotic effect of oligosaccharides on gut microbiome wellness using in vitro fecal fermentation

inferred← citeshttps://doi.org/10.1038/s41598-018-37242-xopenalex-snapshot

Microbiome Alteration in Type 2 Diabetes Mellitus Model of Zebrafish

inferred← citeshttps://doi.org/10.1038/srep46130openalex-snapshot

Intestinal microbiome in children with severe and complicated acute viral gastroenteritis

inferred← citeshttps://doi.org/10.1039/c7mt00241fopenalex-snapshot

Linking iron-deficiency with allergy: role of molecular allergens and the microbiome

inferred← citeshttps://doi.org/10.1039/d4fo01231copenalex-snapshot

Comparative analysis of pectin and prebiotics on human microbiota modulation in early life stages and adults

inferred← citeshttps://doi.org/10.1042/bsr20203850openalex-snapshot

The role of the microbiome in gastrointestinal inflammation

inferred← citeshttps://doi.org/10.1053/j.gastro.2013.02.043openalex-snapshot

Consumption of Fermented Milk Product With Probiotic Modulates Brain Activity

inferred← citeshttps://doi.org/10.1053/j.gastro.2014.01.052openalex-snapshot

Compositional and Functional Features of the Gastrointestinal Microbiome and Their Effects on Human Health

inferred← citeshttps://doi.org/10.1053/j.gastro.2015.03.045openalex-snapshot

Findings From a Randomized Controlled Trial of Fecal Transplantation for Patients With Ulcerative Colitis

inferred← citeshttps://doi.org/10.1053/j.gastro.2016.02.027openalex-snapshot

Biopsychosocial Aspects of Functional Gastrointestinal Disorders: How Central and Environmental Processes Contribute to the Development and Expression of Functional Gastrointestinal Disorders

inferred← citeshttps://doi.org/10.1053/j.gastro.2018.09.008openalex-snapshot

Manipulating the Gut Microbiome as a Treatment Strategy for Functional Gastrointestinal Disorders

inferred← citeshttps://doi.org/10.1079/9781780643632.0061openalex-snapshot

Synbiotics: promoting gastrointestinal health.

inferred← citeshttps://doi.org/10.1080/00325481.2017.1383819openalex-snapshot

Modulation of the gut microbiota: a focus on treatments for irritable bowel syndrome

inferred← citeshttps://doi.org/10.1080/19490976.2016.1218585openalex-snapshot

Irritable bowel syndrome, the microbiota and the gut-brain axis

inferred← citeshttps://doi.org/10.1080/19490976.2020.1854642openalex-snapshot

Antihypertensive effects of exercise involve reshaping of gut microbiota and improvement of gut-brain axis in spontaneously hypertensive rat

inferred← citeshttps://doi.org/10.1080/19490976.2023.2195792openalex-snapshot

Multi-omics for biomarker approaches in the diagnostic evaluation and management of abdominal pain and irritable bowel syndrome: what lies ahead

inferred← citeshttps://doi.org/10.1080/19490976.2024.2363021openalex-snapshot

Adaptation to tolerate high doses of arabinoxylan is associated with fecal levels of Bifidobacterium longum

inferred← citeshttps://doi.org/10.1093/ajcn/nqy376openalex-snapshot

Prebiotics in irritable bowel syndrome and other functional bowel disorders in adults: a systematic review and meta-analysis of randomized controlled trials

inferred← citeshttps://doi.org/10.1093/ajcn/nqz001openalex-snapshot

Effects of a diet based on inulin-rich vegetables on gut health and nutritional behavior in healthy humans

inferred← citeshttps://doi.org/10.1093/carcin/bgad078openalex-snapshot

Multi-omics analysis revealed the regulation mode of intratumor microorganisms and microbial signatures in gastrointestinal cancer

inferred← citeshttps://doi.org/10.1093/femsec/fiy045openalex-snapshot

Evidence of dysbiosis in the intestinal microbial ecosystem of children and adolescents with primary hyperlipidemia and the potential role of regular hazelnut intake

inferred← citeshttps://doi.org/10.1093/femsle/fnad059openalex-snapshot

First characterization of the intestinal microbiota in healthy Tunisian adults using 16S rRNA gene sequencing

inferred← citeshttps://doi.org/10.1093/femsle/fnv092openalex-snapshot

Methanogen communities in stools of humans of different age and health status and co-occurrence with bacteria

inferred← citeshttps://doi.org/10.1093/femsre/fuw045openalex-snapshot

Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategies

inferred← citeshttps://doi.org/10.1093/gastro/goab046openalex-snapshot

Microbiome therapeutics: exploring the present scenario and challenges

inferred← citeshttps://doi.org/10.1093/infdis/jiu391openalex-snapshot

Dietary Pectin–Derived Acidic Oligosaccharides Improve the Pulmonary Bacterial Clearance ofPseudomonas aeruginosaLung Infection in Mice by Modulating Intestinal Microbiota and Immunity

inferred← citeshttps://doi.org/10.1093/nargab/lqad110openalex-snapshot

Data-driven mathematical and visualization approaches for removing rare features for Compositional Data Analysis (CoDA)

inferred← citeshttps://doi.org/10.1096/fj.15-278622openalex-snapshot

Composition and stability of intestinal microbiota of healthy children within a Dutch population

inferred← citeshttps://doi.org/10.1097/md.0000000000021502openalex-snapshot

Probiotics, prebiotics, antibiotic, Chinese herbal medicine, and fecal microbiota transplantation in irritable bowel syndrome

inferred← citeshttps://doi.org/10.1097/meg.0000000000000995openalex-snapshot

Clinical and symptom scores are significantly correlated with fecal microbiota features in patients with symptomatic uncomplicated diverticular disease: a pilot study

inferred← citeshttps://doi.org/10.1097/mib.0000000000000382openalex-snapshot

Recent Advances in Characterizing the Gastrointestinal Microbiome in Crohnʼs Disease

inferred← citeshttps://doi.org/10.1097/mog.0b013e32835a3500openalex-snapshot

Functions of intestinal microflora in children

inferred← citeshttps://doi.org/10.1097/mpg.0000000000001186openalex-snapshot

Gut Microbiota Differences in Children From Distinct Socioeconomic Levels Living in the Same Urban Area in Brazil

inferred← citeshttps://doi.org/10.1099/ijsem.0.003001openalex-snapshot

Catenibacillus scindens gen. nov., sp. nov., a C-deglycosylating human intestinal representative of the Lachnospiraceae

inferred← citeshttps://doi.org/10.1101/2022.11.16.516694openalex-snapshot

Gut Microbiome Prediction: From Current Human Evidence to Future Possibilities

inferred← citeshttps://doi.org/10.1101/2023.03.11.532198openalex-snapshot

Data-Driven Mathematical Approach for Removing Rare Features in Zero-Inflated Datasets

inferred← citeshttps://doi.org/10.1101/478586openalex-snapshot

Gut microbiota features of the geographically diverse Indian population

inferred← citeshttps://doi.org/10.1101/gr.278637.123openalex-snapshot

Global compositional and functional states of the human gut microbiome in health and disease

inferred← citeshttps://doi.org/10.1111/1365-2656.13229openalex-snapshot

Applying the core microbiome to understand host–microbe systems

inferred← citeshttps://doi.org/10.1111/1462-2920.12023openalex-snapshot

Long‐term monitoring of the human intestinal microbiota composition

inferred← citeshttps://doi.org/10.1111/1462-2920.12815openalex-snapshot

Microbial community dynamics during the early stages of plant polymer breakdown in paddy soil

inferred← citeshttps://doi.org/10.1111/1462-2920.13473openalex-snapshot

How stable is the human gut microbiota? And why this question matters

inferred← citeshttps://doi.org/10.1111/1556-4029.12828openalex-snapshot

Estimating Time Since Death from Postmortem Human Gut Microbial Communities

inferred← citeshttps://doi.org/10.1111/1574-6976.12075openalex-snapshot

The first 1000 cultured species of the human gastrointestinal microbiota

inferred← citeshttps://doi.org/10.1111/1751-2980.12797openalex-snapshot

Impact of a probiotic product on bowel habits and microbial profile in participants with functional constipation: A randomized controlled trial

inferred← citeshttps://doi.org/10.1111/1751-2980.13203openalex-snapshot

Impact of auricular percutaneous electrical nerve field stimulation on gut microbiome in adolescents with irritable bowel syndrome: A pilot study

inferred← citeshttps://doi.org/10.1111/1751-7915.12047openalex-snapshot

Fame and future of faecal transplantations – developing next‐generation therapies with synthetic microbiomes

inferred← citeshttps://doi.org/10.1111/apt.13399openalex-snapshot

The relationship between faecal-associated and mucosal-associated microbiota in irritable bowel syndrome patients and healthy subjects

inferred← citeshttps://doi.org/10.1111/apt.15079openalex-snapshot

Review article: implementation of a diet low in FODMAPs for patients with irritable bowel syndrome—directions for future research

inferred← citeshttps://doi.org/10.1111/apt.15740openalex-snapshot

Randomised clinical trial: faecal microbiota transplantation versus autologous placebo administered via colonoscopy in irritable bowel syndrome

inferred← citeshttps://doi.org/10.1111/febs.14346openalex-snapshot

The triune of intestinal microbiome, genetics and inflammatory status and its impact on the healing of lower gastrointestinal anastomoses

inferred← citeshttps://doi.org/10.1111/febs.17200openalex-snapshot

The role of the gut microbiome in disorders of gut–brain interaction

inferred← citeshttps://doi.org/10.1111/j.1469-0691.2012.03855.xopenalex-snapshot

The adult intestinal core microbiota is determined by analysis depth and health status

inferred← citeshttps://doi.org/10.1111/j.1574-6941.2011.01222.xopenalex-snapshot

Application of phylogenetic microarrays to interrogation of human microbiota

inferred← citeshttps://doi.org/10.1111/j.1753-4887.2012.00505.xopenalex-snapshot

Role of the intestinal microbiome in health and disease: from correlation to causation

inferred← citeshttps://doi.org/10.1111/jgh.13700openalex-snapshot

Prebiotic inulin‐type fructans and galacto‐oligosaccharides: definition, specificity, function, and application in gastrointestinal disorders

inferred← citeshttps://doi.org/10.1111/liv.12117openalex-snapshot

Symbiotic formulation in experimentally induced liver fibrosis in rats: intestinal microbiota as a key point to treat liver damage?

inferred← citeshttps://doi.org/10.1111/mec.12909openalex-snapshot

Gastrointestinal microbiota of wild and inbred individuals of two house mouse subspecies assessed using high‐throughput parallel pyrosequencing

inferred← citeshttps://doi.org/10.1111/nmo.12049openalex-snapshot

The microbiome is essential for normal gut intrinsic primary afferent neuron excitability in the mouse

inferred← citeshttps://doi.org/10.1111/nmo.12078openalex-snapshot

A randomized, double‐blind, controlled study and pooled analysis of two identical trials of fermented milk containing probioticBifidobacterium lactisCNCM I‐2494 in healthy women reporting minor digestive symptoms

inferred← citeshttps://doi.org/10.1111/nmo.12911openalex-snapshot

Effects of sc FOS on the composition of fecal microbiota and anxiety in patients with irritable bowel syndrome: a randomized, double blind, placebo controlled study

inferred← citeshttps://doi.org/10.1111/nmo.13172openalex-snapshot

Reproducibility of assessing fecal microbiota in chronic constipation

inferred← citeshttps://doi.org/10.1111/nmo.13194openalex-snapshot

Role of microbiota in the pathogenesis of functional disorders of the lower GI tract: Work in progress

inferred← citeshttps://doi.org/10.1128/9781555819071.ch11openalex-snapshot

The Gastrointestinal Microbiome

inferred← citeshttps://doi.org/10.1128/aem.00462-17openalex-snapshot

Signature of Microbial Dysbiosis in Periodontitis

inferred← citeshttps://doi.org/10.1128/aem.01993-13openalex-snapshot

BopA Does Not Have a Major Role in the Adhesion of Bifidobacterium bifidum to Intestinal Epithelial Cells, Extracellular Matrix Proteins, and Mucus

inferred← citeshttps://doi.org/10.1128/mmbr.00054-18openalex-snapshot

The Use of Defined Microbial Communities To Model Host-Microbe Interactions in the Human Gut

inferred← citeshttps://doi.org/10.1134/s1062359022030153openalex-snapshot

Alkylresorcinols: New Potential Bioregulators in the Superorganism System (Human–Microbiota)

inferred← citeshttps://doi.org/10.1136/gutjnl-2012-303304openalex-snapshot

Insight into the prebiotic concept: lessons from an exploratory, double blind intervention study with inulin-type fructans in obese women

inferred← citeshttps://doi.org/10.1136/gutjnl-2013-305994openalex-snapshot

Faecal microbiota composition and host–microbe cross-talk following gastroenteritis and in postinfectious irritable bowel syndrome

inferred← citeshttps://doi.org/10.1136/gutjnl-2014-307240openalex-snapshot

Effects of bowel cleansing on the intestinal microbiota

inferred← citeshttps://doi.org/10.1136/gutjnl-2016-312569openalex-snapshot

Novel insight into the role of microbiota in colorectal surgery

inferred← citeshttps://doi.org/10.1136/gutjnl-2017-314792openalex-snapshot

Faecal microbiota composition associates with abdominal pain in the general population

inferred← citeshttps://doi.org/10.1146/annurev-food-030117-012830openalex-snapshot

Diet, Microbiota, and Metabolic Health: Trade-Off Between Saccharolytic and Proteolytic Fermentation

inferred← citeshttps://doi.org/10.1146/annurev-food-030212-182554openalex-snapshot

Impact of Diet on Human Intestinal Microbiota and Health

inferred← citeshttps://doi.org/10.1155/2014/983635openalex-snapshot

Probiotics in the Treatment of Chronic Rhinoconjunctivitis and Chronic Rhinosinusitis

inferred← citeshttps://doi.org/10.1155/2015/169381openalex-snapshot

Bioaccessible Antioxidants in Milk Fermented byBifidobacterium longumsubsp.longumStrains

inferred← citeshttps://doi.org/10.1155/2022/9999925openalex-snapshot

Fecal Microbiota Transplants for Inflammatory Bowel Disease Treatment: Synthetic- and Engineered Communities-Based Microbiota Transplants Are the Future

inferred← citeshttps://doi.org/10.1158/1940-6207.capr-15-0350openalex-snapshot

Cervical Microbiota Associated with Higher Grade Cervical Intraepithelial Neoplasia in Women Infected with High-Risk Human Papillomaviruses

inferred← citeshttps://doi.org/10.1159/000345732openalex-snapshot

Intestinal Microbiota Composition in Children

inferred← citeshttps://doi.org/10.1163/18762891-bja00042openalex-snapshot

A convenient and versatile culturomics platform to expand the human gut culturome of Lachnospiraceae and Oscillospiraceae

inferred← citeshttps://doi.org/10.1177/11795549221130549openalex-snapshot

The Association Between Gut Microbiota, Toll-Like Receptors, and Colorectal Cancer

inferred← citeshttps://doi.org/10.1177/1756283x13482996openalex-snapshot

Role of the gut microbiota in health and chronic gastrointestinal disease: understanding a hidden metabolic organ

inferred← citeshttps://doi.org/10.1177/1756283x15607414openalex-snapshot

Fecal microbiota transplantation: in perspective

inferred← citeshttps://doi.org/10.1177/17562848241309868openalex-snapshot

Safety and efficacy of faecal microbiota transplantation in patients with acute uncomplicated diverticulitis: study protocol for a randomised placebo-controlled trial

inferred← citeshttps://doi.org/10.1186/1471-2164-14-s5-s16openalex-snapshot

Analysis of the intestinal microbiota using SOLiD 16S rRNA gene sequencing and SOLiD shotgun sequencing

inferred← citeshttps://doi.org/10.1186/1471-2180-13-12openalex-snapshot

Microarray analysis reveals marked intestinal microbiota aberrancy in infants having eczema compared to healthy children in at-risk for atopic disease

inferred← citeshttps://doi.org/10.1186/1471-230x-13-113openalex-snapshot

Duodenal microbiota composition and mucosal homeostasis in pediatric celiac disease

inferred← citeshttps://doi.org/10.1186/1471-230x-13-151openalex-snapshot

The protective effect of VSL#3 on intestinal permeability in a rat model of alcoholic intestinal injury

inferred← citeshttps://doi.org/10.1186/1746-6148-10-62openalex-snapshot

Molecular analysis of the microbiota in hard feces from healthy rabbits (Oryctolagus cuniculus) medicated with long term oral meloxicam

inferred← citeshttps://doi.org/10.1186/s10194-024-01906-zopenalex-snapshot

Immune cells mediate the effects of gut microbiota on neuropathic pain: a Mendelian randomization study

inferred← citeshttps://doi.org/10.1186/s12916-016-0698-zopenalex-snapshot

Long-term effects on luminal and mucosal microbiota and commonly acquired taxa in faecal microbiota transplantation for recurrent Clostridium difficile infection

inferred← citeshttps://doi.org/10.1186/s12917-021-03092-5openalex-snapshot

Cupriavidus in the intestinal microbiota of Tibet endemic fish Glyptosternum maculatum can help it adapt to habitat of the Qinghai Tibet Plateau

inferred← citeshttps://doi.org/10.1186/s12957-019-1754-xopenalex-snapshot

Role of the intestinal microbiome in colorectal cancer surgery outcomes

inferred← citeshttps://doi.org/10.1186/s12967-018-1756-4openalex-snapshot

Microbiome–metabolome reveals the contribution of gut–kidney axis on kidney disease

inferred← citeshttps://doi.org/10.1186/s12970-020-00353-wopenalex-snapshot

The athletic gut microbiota

inferred← citeshttps://doi.org/10.1186/s13059-015-0639-8openalex-snapshot

Temporal and technical variability of human gut metagenomes

inferred← citeshttps://doi.org/10.1186/s40168-016-0156-3openalex-snapshot

Bloom and bust: intestinal microbiota dynamics in response to hospital exposures and Clostridium difficile colonization or infection

inferred← citeshttps://doi.org/10.1186/s40168-016-0189-7openalex-snapshot

Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions

inferred← citeshttps://doi.org/10.1186/s40168-017-0267-5openalex-snapshot

Optimizing methods and dodging pitfalls in microbiome research

showing the first 200 of 330

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