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Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

https://doi.org/10.1371/journal.pone.0030087

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Rhizospheric soil and root endogenous fungal diversity and composition in response to continuous Panax notoginseng cropping practices

inferred← citeshttps://doi.org/10.1016/j.micres.2025.128384openalex-snapshot

Microbiome based precision medicine through integrated multiomics and machine learning

inferred← citeshttps://doi.org/10.1016/j.mimet.2012.07.008openalex-snapshot

Microbial 16S rRNA Ion Tag and community metagenome sequencing using the Ion Torrent (PGM) Platform

inferred← citeshttps://doi.org/10.1016/j.mimet.2013.08.011openalex-snapshot

High throughput sequencing methods and analysis for microbiome research

inferred← citeshttps://doi.org/10.1016/j.mimet.2017.11.012openalex-snapshot

VMG II transport medium stabilises oral microbiome samples for Next-Generation Sequencing

inferred← citeshttps://doi.org/10.1016/j.ncrna.2017.06.003openalex-snapshot

Unraveling long non-coding RNAs through analysis of high-throughput RNA-sequencing data

inferred← citeshttps://doi.org/10.1016/j.nmni.2018.05.007openalex-snapshot

Completion of genome of Aeromonas salmonicida subsp. salmonicida 01-B526 reveals how sequencing technologies can influence sequence quality and result interpretations

inferred← citeshttps://doi.org/10.1016/j.otc.2017.01.004openalex-snapshot

Organism and Microbiome Analysis

inferred← citeshttps://doi.org/10.1016/j.physleta.2017.12.010openalex-snapshot

Silicene nanoribbon as a new DNA sequencing device

inferred← citeshttps://doi.org/10.1016/j.psep.2016.01.014openalex-snapshot

Migration and biodegradation of BDE-99 in different river-based natural groundwater recharge modes with treated municipal wastewater

inferred← citeshttps://doi.org/10.1016/j.psj.2019.12.019openalex-snapshot

Poultry processing and the application of microbiome mapping

inferred← citeshttps://doi.org/10.1016/j.psj.2025.105242openalex-snapshot

Do we need a standardized 16S rRNA gene amplicon sequencing analysis protocol for poultry microbiota research?

inferred← citeshttps://doi.org/10.1016/j.scitotenv.2018.08.045openalex-snapshot

The biology of fog: results from coastal Maine and Namib Desert reveal common drivers of fog microbial composition

inferred← citeshttps://doi.org/10.1016/j.scitotenv.2022.153701openalex-snapshot

Changes in coral forest microbiomes predict the impact of marine heatwaves on habitat-forming species down to mesophotic depths

inferred← citeshttps://doi.org/10.1016/j.scitotenv.2023.165867openalex-snapshot

Application of high-throughput sequencing technologies and analytical tools for pathogen detection in urban water systems: Progress and future perspectives

inferred← citeshttps://doi.org/10.1016/j.scitotenv.2023.166079openalex-snapshot

Effects of biochar on soil microbial communities: A meta-analysis

inferred← citeshttps://doi.org/10.1016/j.soilbio.2013.05.014openalex-snapshot

Illumina metabarcoding of a soil fungal community

inferred← citeshttps://doi.org/10.1016/j.tim.2016.11.003openalex-snapshot

Defining the Core Microbiome in Corals’ Microbial Soup

inferred← citeshttps://doi.org/10.1016/j.virol.2013.01.023openalex-snapshot

Metagenomic sequencing of “HPV-negative” condylomas detects novel putative HPV types

inferred← citeshttps://doi.org/10.1016/j.watres.2014.07.008openalex-snapshot

Methodological approaches for studying the microbial ecology of drinking water distribution systems

inferred← citeshttps://doi.org/10.1016/j.ygeno.2015.11.003openalex-snapshot

The sequence of sequencers: The history of sequencing DNA

inferred← citeshttps://doi.org/10.1016/j.ygeno.2020.09.006openalex-snapshot

Sediment-associated bacterial community and predictive functionalities are influenced by choice of 16S ribosomal RNA hypervariable region(s): An amplicon-based diversity study

inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107964openalex-snapshot

Phylogenomic position of genetically diverse phagotrophic stramenopile flagellates in the sediment-associated MAST-6 lineage and a potentially halotolerant placididean

inferred← citeshttps://doi.org/10.1017/s0025315418000188openalex-snapshot

Comparison of bacterial communities associated withXestospongia testudinaria, sediment and seawater in a Singaporean coral reef ecosystem

inferred← citeshttps://doi.org/10.1021/es5053045openalex-snapshot

Responses of Microbial Communities to Single-Walled Carbon Nanotubes in Phenol Wastewater Treatment Systems

inferred← citeshttps://doi.org/10.1038/ajg.2014.73openalex-snapshot

Analyzing the Human Microbiome: A “How To” guide for Physicians

inferred← citeshttps://doi.org/10.1038/ismej.2015.5openalex-snapshot

Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill

inferred← citeshttps://doi.org/10.1038/modpathol.2017.145openalex-snapshot

SYK expression in monomorphic epitheliotropic intestinal T-cell lymphoma

inferred← citeshttps://doi.org/10.1038/msb.2013.22openalex-snapshot

Computational meta'omics for microbial community studies

inferred← citeshttps://doi.org/10.1038/nrg3655openalex-snapshot

The role of replicates for error mitigation in next-generation sequencing

inferred← citeshttps://doi.org/10.1038/s41467-024-52761-0openalex-snapshot

An assessment of the species diversity and disease potential of Pythium communities in Europe

inferred← citeshttps://doi.org/10.1038/s41581-022-00647-zopenalex-snapshot

Gut microbiome studies in CKD: opportunities, pitfalls and therapeutic potential

inferred← citeshttps://doi.org/10.1038/s41586-021-03519-xopenalex-snapshot

A high-quality bonobo genome refines the analysis of hominid evolution

inferred← citeshttps://doi.org/10.1038/s41598-017-06665-3openalex-snapshot

Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing

inferred← citeshttps://doi.org/10.1038/s41598-017-08937-4openalex-snapshot

Actinobacterial Rare Biospheres and Dark Matter Revealed in Habitats of the Chilean Atacama Desert

inferred← citeshttps://doi.org/10.1038/s41598-017-09064-wopenalex-snapshot

Facile single-stranded DNA sequencing of human plasma DNA via thermostable group II intron reverse transcriptase template switching

inferred← citeshttps://doi.org/10.1038/s41598-018-21440-8openalex-snapshot

Biogeographical Differences in the Influence of Maternal Microbial Sources on the Early Successional Development of the Bovine Neonatal Gastrointestinal tract

inferred← citeshttps://doi.org/10.1038/s41598-018-28905-wopenalex-snapshot

Unique subgingival microbiota associated with periodontitis in cirrhosis patients

inferred← citeshttps://doi.org/10.1038/s41598-018-29521-4openalex-snapshot

Comparative mangrove metagenome reveals global prevalence of heavy metals and antibiotic resistome across different ecosystems

inferred← citeshttps://doi.org/10.1038/s41598-018-30515-5openalex-snapshot

Analysis of sequencing strategies and tools for taxonomic annotation: Defining standards for progressive metagenomics

inferred← citeshttps://doi.org/10.1038/s41598-020-63561-zopenalex-snapshot

Comparative analyses of the V4 and V9 regions of 18S rDNA for the extant eukaryotic community using the Illumina platform

inferred← citeshttps://doi.org/10.1038/s41598-020-65203-wopenalex-snapshot

The Effects of Tetracycline Residues on the Microbial Community Structure of Tobacco Soil in Pot Experiment

inferred← citeshttps://doi.org/10.1038/s41598-022-07765-5openalex-snapshot

Investigation of bacterial diversity using 16S rRNA sequencing and prediction of its functionalities in Moroccan phosphate mine ecosystem

inferred← citeshttps://doi.org/10.1038/srep06534openalex-snapshot

Transcriptome analysis elucidates key developmental components of bryozoan lophophore development

inferred← citeshttps://doi.org/10.1038/srep12601openalex-snapshot

Inner workings of thrombolites: spatial gradients of metabolic activity as revealed by metatranscriptome profiling

inferred← citeshttps://doi.org/10.1039/c3np20099jopenalex-snapshot

Bioinformatics challenges in de novo transcriptome assembly using short read sequences in the absence of a reference genome sequence

inferred← citeshttps://doi.org/10.1039/c5an00954eopenalex-snapshot

Trends in aptamer selection methods and applications

inferred← citeshttps://doi.org/10.1039/c6mb00115gopenalex-snapshot

Next generation sequencing: implications in personalized medicine and pharmacogenomics

inferred← citeshttps://doi.org/10.1061/(asce)ee.1943-7870.0001548openalex-snapshot

Metagenomic Approaches for Detecting Viral Diversity in Water Environments

inferred← citeshttps://doi.org/10.1063/1.4953539openalex-snapshot

Metatranscriptomics workflow analysis from environmental sample of fungi

inferred← citeshttps://doi.org/10.1073/pnas.1501334112openalex-snapshot

Optimized deep-targeted proteotranscriptomic profiling reveals unexplored Conus toxin diversity and novel cysteine frameworks

inferred← citeshttps://doi.org/10.1080/08927014.2013.853051openalex-snapshot

First study on gene expression of cement proteins and potential adhesion-related genes of a membranous-based barnacle as revealed from Next-Generation Sequencing technology

inferred← citeshttps://doi.org/10.1080/17446651.2019.1689120openalex-snapshot

Insights into pituitary tumorigenesis: from Sanger sequencing to next-generation sequencing and beyond

inferred← citeshttps://doi.org/10.1080/19420862.2021.1996732openalex-snapshot

Current strategies for detecting functional convergence across B-cell receptor repertoires

inferred← citeshttps://doi.org/10.1080/19443994.2016.1167631openalex-snapshot

Effect of biochar on migration and biodegradation of 4-n-nonylphenol (NP) during river-based groundwater recharge with reclaimed water

inferred← citeshttps://doi.org/10.1080/19490976.2020.1794266openalex-snapshot

The meconium microbiota shares more features with the amniotic fluid microbiota than the maternal fecal and vaginal microbiota

inferred← citeshttps://doi.org/10.1080/21655979.2017.1373538openalex-snapshot

Survey of gene splicing algorithms based on reads

inferred← citeshttps://doi.org/10.1080/24701394.2025.2487451openalex-snapshot

General features and evolution of mitochondrial genomes in Dictyostelia (Amoebozoa)

inferred← citeshttps://doi.org/10.1086/bblv223n1p155openalex-snapshot

Investigation into the Physiologies of Aeromonas veronii in vitro and Inside the Digestive Tract of the Medicinal Leech Using RNA-seq

inferred← citeshttps://doi.org/10.1089/aid.2016.0151openalex-snapshot

Ultra-Deep Sequencing Analysis on HIV Drug-Resistance-Associated Mutations Among HIV-Infected Individuals: First Report from the Philippines

inferred← citeshttps://doi.org/10.1089/omi.2015.0191openalex-snapshot

Antibiotic Resistome: Improving Detection and Quantification Accuracy for Comparative Metagenomics

inferred← citeshttps://doi.org/10.1093/aje/kwz007openalex-snapshot

Invited Commentary: Improving the Accessibility of Human Microbiome Project Data Through Integration With R/Bioconductor

inferred← citeshttps://doi.org/10.1093/bib/bbad320openalex-snapshot

Sequence Alignment/Map format: a comprehensive review of approaches and applications

inferred← citeshttps://doi.org/10.1093/bib/bbs039openalex-snapshot

Current opportunities and challenges in microbial metagenome analysis--a bioinformatic perspective

inferred← citeshttps://doi.org/10.1093/bib/bbt032openalex-snapshot

Environmental bio-monitoring with high-throughput sequencing

inferred← citeshttps://doi.org/10.1093/bib/bbw096openalex-snapshot

The present and future ofde novowhole-genome assembly

inferred← citeshttps://doi.org/10.1093/bib/bby090openalex-snapshot

Sequence clustering in bioinformatics: an empirical study

inferred← citeshttps://doi.org/10.1093/bib/bbz155openalex-snapshot

Current challenges and best-practice protocols for microbiome analysis

inferred← citeshttps://doi.org/10.1093/bioinformatics/bts636openalex-snapshot

MetaGeneTack: ab initio detection of frameshifts in metagenomic sequences

inferred← citeshttps://doi.org/10.1093/bioinformatics/btt004openalex-snapshot

Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine

inferred← citeshttps://doi.org/10.1093/bioinformatics/bty096openalex-snapshot

MUGAN: multi-GPU accelerated AmpliconNoise server for rapid microbial diversity assessment

inferred← citeshttps://doi.org/10.1093/dnares/dsw050openalex-snapshot

Exploiting the great potential of Sequence Capture data by a new tool, SUPER-CAP

inferred← citeshttps://doi.org/10.1093/ecco-jcc/jjw024openalex-snapshot

Meta-omics in Inflammatory Bowel Disease Research: Applications, Challenges, and Guidelines

inferred← citeshttps://doi.org/10.1093/femsec/fiaa173openalex-snapshot

Shotgun metagenomics reveals a heterogeneous prokaryotic community and a wide array of antibiotic resistance genes in mangrove sediment

inferred← citeshttps://doi.org/10.1093/femsec/fiw210openalex-snapshot

Microenvironmental heterogeneity of gut compartments drives bacterial community structure in wood- and humus-feeding higher termites

inferred← citeshttps://doi.org/10.1093/forestry/cpv037openalex-snapshot

TheEucalyptusstem canker pathogenTeratosphaeria zuluensisdetected in seed samples

inferred← citeshttps://doi.org/10.1093/gbe/evs116openalex-snapshot

Distinct Mutational Behaviors Differentiate Short Tandem Repeats from Microsatellites in the Human Genome

inferred← citeshttps://doi.org/10.1093/gbe/evv084openalex-snapshot

Phylogenomic Analysis of Oenococcus oeni Reveals Specific Domestication of Strains to Cider and Wines

inferred← citeshttps://doi.org/10.1093/nar/gku169openalex-snapshot

MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences

inferred← citeshttps://doi.org/10.1093/nar/gkw545openalex-snapshot

Toward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflow

inferred← citeshttps://doi.org/10.1093/nar/gky016openalex-snapshot

Highly selective retrieval of accurate DNA utilizing a pool of in situ-replicated DNA from multiple next-generation sequencing platforms

showing the first 200 of 428

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