On the public citation graph

pcaGoPromoter - An R Package for Biological and Regulatory Interpretation of Principal Components in Genome-Wide Gene Expression Data

0 signed · 78 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ibd.20879openalex-snapshot
Diagnosis of ulcerative colitis before onset of inflammation by multivariate modeling of genome-wide gene expression data
inferredcites →https://doi.org/10.1002/pmic.200600898openalex-snapshot
A multivariate analysis approach to the integration of proteomic and gene expression data
inferredcites →https://doi.org/10.1016/0169-7439(87)80084-9openalex-snapshot
Principal component analysis
inferredcites →https://doi.org/10.1016/j.cell.2007.05.003openalex-snapshot
PCNA, the Maestro of the Replication Fork
inferredcites →https://doi.org/10.1016/j.cellsig.2005.08.007openalex-snapshot
ERK is an anti-inflammatory signal that suppresses expression of NF-κB-dependent inflammatory genes by inhibiting IKK activity in endothelial cells
inferredcites →https://doi.org/10.1016/j.gene.2003.09.028openalex-snapshot
Ets ternary complex transcription factors
inferredcites →https://doi.org/10.1016/s0014-5793(03)00485-xopenalex-snapshot
An E2F site in the 5′‐promoter region contributes to serum‐dependent up‐regulation of the human proliferating cell nuclear antigen gene
inferredcites →https://doi.org/10.1016/s0168-9525(99)01882-xopenalex-snapshot
Introducing RefSeq and LocusLink: curated human genome resources at the NCBI
inferredcites →https://doi.org/10.1038/35000501openalex-snapshot
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
inferredcites →https://doi.org/10.1038/35076576openalex-snapshot
Computational analysis of microarray data
inferredcites →https://doi.org/10.1038/75556openalex-snapshot
Gene Ontology: tool for the unification of biology
inferredcites →https://doi.org/10.1038/nature03441openalex-snapshot
Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
inferredcites →https://doi.org/10.1038/nbt0308-303openalex-snapshot
What is principal component analysis?
inferredcites →https://doi.org/10.1038/sj.jid.5700902openalex-snapshot
Gene Expression Time Course in the Human Skin during Elicitation of Allergic Contact Dermatitis
inferredcites →https://doi.org/10.1055/s-0038-1638484openalex-snapshot
Section 7: Bioinformatics: Computational Approaches to Analysis of DNA Microarray Data
inferredcites →https://doi.org/10.1073/pnas.0506580102openalex-snapshot
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
inferredcites →https://doi.org/10.1073/pnas.95.25.14863openalex-snapshot
Cluster analysis and display of genome-wide expression patterns
inferredcites →https://doi.org/10.1074/jbc.273.29.18623openalex-snapshot
Identification of a Novel Inhibitor of Mitogen-activated Protein Kinase Kinase
inferredcites →https://doi.org/10.1080/14786440109462720openalex-snapshot
LIII. On lines and planes of closest fit to systems of points in space
inferredcites →https://doi.org/10.1093/bioinformatics/btg405openalex-snapshot
affy—analysis of Affymetrix GeneChip data at the probe level
inferredcites →https://doi.org/10.1093/bioinformatics/bti367openalex-snapshot
Integration of GO annotations in Correspondence Analysis: facilitating the interpretation of microarray data
inferredcites →https://doi.org/10.1093/bioinformatics/bti394openalex-snapshot
MADE4: an R package for multivariate analysis of gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btl567openalex-snapshot
Using GOstats to test gene lists for GO term association
inferredcites →https://doi.org/10.1093/bioinformatics/btl597openalex-snapshot
Integrating transcription factor binding site information with gene expression datasets
inferredcites →https://doi.org/10.1093/bioinformatics/btl633openalex-snapshot
Enrichment or depletion of a GO category within a class of genes: which test?
inferredcites →https://doi.org/10.1093/bioinformatics/btm051openalex-snapshot
Analyzing gene expression data in terms of gene sets: methodological issues
inferredcites →https://doi.org/10.1093/bioinformatics/btm069openalex-snapshot
pcaMethods—a bioconductor package providing PCA methods for incomplete data
inferredcites →https://doi.org/10.1093/biomet/58.3.453openalex-snapshot
The Biplot Graphic Display of Matrices with Application to Principal Component Analysis
inferredcites →https://doi.org/10.1093/nar/28.1.316openalex-snapshot
TRANSFAC: an integrated system for gene expression regulation
inferredcites →https://doi.org/10.1093/nar/gkg585openalex-snapshot
MATCHTM: a tool for searching transcription factor binding sites in DNA sequences
inferredcites →https://doi.org/10.1093/nar/gkp950openalex-snapshot
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
inferredcites →https://doi.org/10.1093/nar/gng015openalex-snapshot
Summaries of Affymetrix GeneChip probe level data
inferredcites →https://doi.org/10.1101/gad.949802openalex-snapshot
E2F integrates cell cycle progression with DNA repair, replication, and G 2 /M checkpoints
inferredcites →https://doi.org/10.1101/gr.947203openalex-snapshot
Genome-Wide In Silico Identification of Transcriptional Regulators Controlling the Cell Cycle in Human Cells
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1126/science.283.5398.83openalex-snapshot
The Transcriptional Program in the Response of Human Fibroblasts to Serum
inferredcites →https://doi.org/10.1126/stke.3572006re13openalex-snapshot
Regulation and Function of IKK and IKK-Related Kinases
inferredcites →https://doi.org/10.1128/mcb.21.4.1393-1403.2001openalex-snapshot
Hepatocyte Nuclear Factor 4α (Nuclear Receptor 2A1) Is Essential for Maintenance of Hepatic Gene Expression and Lipid Homeostasis
inferredcites →https://doi.org/10.1139/o09-186openalex-snapshot
Reduction in cholesterol synthesis in response to serum starvation in lymphoblasts of a patient with Barth syndromeThis paper is one of a selection of papers published in this special issue entitled “Second International Symposium on Recent Advances in Basic, Clinical, and Social Medicine” and has…
inferredcites →https://doi.org/10.1142/9789814447331_0043openalex-snapshot
PRINCIPAL COMPONENTS ANALYSIS TO SUMMARIZE MICROARRAY EXPERIMENTS: APPLICATION TO SPORULATION TIME SERIES
inferredcites →https://doi.org/10.1152/ajpgi.00321.2006openalex-snapshot
Clinical phenotype and gene expression profile in Crohn's disease
inferredcites →https://doi.org/10.1152/physiolgenomics.00314.2005openalex-snapshot
Metabolome, transcriptome, and bioinformatic cis-element analyses point to HNF-4 as a central regulator of gene expression during enterocyte differentiation
inferredcites →https://doi.org/10.1186/1471-2105-11-336openalex-snapshot
PCA2GO: a new multivariate statistics based method to identify highly expressed GO-Terms
inferredcites →https://doi.org/10.1186/gb-2004-5-10-r80openalex-snapshot
Bioconductor: open software development for computational biology and bioinformatics
inferredcites →https://doi.org/10.1186/gb-2010-11-2-r14openalex-snapshot
Gene ontology analysis for RNA-seq: accounting for selection bias
inferredcites →https://doi.org/10.1194/jlr.r800054-jlr200openalex-snapshot
Cholesterol feedback: from Schoenheimer's bottle to Scap's MELADL
inferredcites →https://doi.org/10.1517/14622416.3.3.403openalex-snapshot
Analyzing Array Data Using Supervised Methods
inferredcites →https://doi.org/10.2217/14622416.9.1.35openalex-snapshot
Pathway Analysis Tools and Toxicogenomics Reference Databases for Risk Assessment

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.5362205openalex-extracted
Network Pharmacology-Guided Discovery and Computational Validation of Pinocembrin-Based Anticancer Inhibitors Targeting Mmp9, Tp53, and Hif1α Through Molecular Docking, Admet Profiling, and Molecular Dynamics Simulations
inferred← citeshttps://doi.org/10.1002/glia.23544openalex-snapshot
Stroke target identification guided by astrocyte transcriptome analysis
inferred← citeshttps://doi.org/10.1007/s00701-020-04238-4openalex-snapshot
Tumor miRNA expression profile is related to vestibular schwannoma growth rate
inferred← citeshttps://doi.org/10.1016/j.bbalip.2018.04.006openalex-snapshot
Inactivation of ceramide synthase 2 catalytic activity in mice affects transcription of genes involved in lipid metabolism and cell division
inferred← citeshttps://doi.org/10.1016/j.bbrc.2018.06.018openalex-snapshot
Gene expression profile of TLR7 signaling pathway in the liver of rhesus rotavirus-induced murine biliary atresia
inferred← citeshttps://doi.org/10.1016/j.biochi.2020.08.020openalex-snapshot
Cancer diets for cancer patients: Lessons from mouse studies and new insights from the study of fatty acid metabolism in tumors
inferred← citeshttps://doi.org/10.1016/j.neulet.2013.10.018openalex-snapshot
The relationship between the phenotype of Parkinson's disease and levodopa-induced dyskinesia
inferred← citeshttps://doi.org/10.1038/ni.3745openalex-snapshot
S100-alarmin-induced innate immune programming protects newborn infants from sepsis
inferred← citeshttps://doi.org/10.1038/s41598-017-04370-9openalex-snapshot
A cross-species approach to identify transcriptional regulators exemplified for Dnajc22 and Hnf4a
inferred← citeshttps://doi.org/10.1038/s41598-018-24728-xopenalex-snapshot
Cytoglobin affects tumorigenesis and the expression of ulcerative colitis-associated genes under chemically induced colitis in mice
inferred← citeshttps://doi.org/10.1038/s41598-026-55381-4openalex-snapshot
Computational discovery of emodin-based anthraquinones as PARP-1 inhibitors with relevance to ovarian and prostate cancer
inferred← citeshttps://doi.org/10.1093/ecco-jcc/jjy112openalex-snapshot
Rectal Insulin Instillation Inhibits Inflammation and Tumor Development in Chemically Induced Colitis
inferred← citeshttps://doi.org/10.1097/mib.0000000000000235openalex-snapshot
Transcriptional Analysis of Left-sided Colitis, Pancolitis, and Ulcerative Colitis-associated Dysplasia
inferred← citeshttps://doi.org/10.1101/2020.07.07.20148395openalex-snapshot
Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients
inferred← citeshttps://doi.org/10.1101/2024.01.12.575474openalex-snapshot
Differentially polarized macrophages show diverse proangiogenic characteristics under normo- and hyperglycemic conditions
inferred← citeshttps://doi.org/10.1111/aos.12146openalex-snapshot
Early changes in gene expression induced by blue light irradiation of A2E-laden retinal pigment epithelial cells
inferred← citeshttps://doi.org/10.1111/joim.12160openalex-snapshot
Assessment of the validity of a multigene analysis in the diagnostics of inflammatory bowel disease
inferred← citeshttps://doi.org/10.1111/mec.13125openalex-snapshot
The role of transcriptome resilience in resistance of corals to bleaching
inferred← citeshttps://doi.org/10.1186/1756-3305-5-134openalex-snapshot
Functional characterization of an arrestin gene on insecticide resistance of Culex pipiens pallens
inferred← citeshttps://doi.org/10.1186/s12859-019-2879-1openalex-snapshot
pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components
inferred← citeshttps://doi.org/10.1186/s12864-017-4186-4openalex-snapshot
The gene SMART study: method, study design, and preliminary findings
inferred← citeshttps://doi.org/10.1186/s13073-020-00823-5openalex-snapshot
Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients
inferred← citeshttps://doi.org/10.1186/s13104-019-4471-1openalex-snapshot
Shiny-Seq: advanced guided transcriptome analysis
inferred← citeshttps://doi.org/10.1371/journal.pgen.1003292openalex-snapshot
Cell Reprogramming Requires Silencing of a Core Subset of Polycomb Targets
inferred← citeshttps://doi.org/10.15252/embr.202154315openalex-snapshot
A cAMP signalosome in primary cilia drives gene expression and kidney cyst formation
inferred← citeshttps://doi.org/10.2147/bctt.s146247openalex-snapshot
Profiling of gene expression regulated by 17β-estradiol and tamoxifen in estrogen receptor-positive and estrogen receptor-negative human breast cancer cell lines
inferred← citeshttps://doi.org/10.33594/000000024openalex-snapshot
Suppressor of Cytokine Signaling 1 is Involved in Gene Regulation Which Controls the Survival of Ly6Clow Monocytes in Mice
inferred← citeshttps://doi.org/10.3390/ijms231911057openalex-snapshot
Fetal Programming of the Endocrine Pancreas: Impact of a Maternal Low-Protein Diet on Gene Expression in the Perinatal Rat Pancreas
inferred← citeshttps://doi.org/10.3390/ijms26104846openalex-snapshot
Polarized Macrophages Show Diverse Pro-Angiogenic Characteristics Under Normo- and Hyperglycemic Conditions
inferred← citeshttps://doi.org/10.4161/epi.29676openalex-snapshot
Aberrant signature methylome by DNMT1 hot spot mutation in hereditary sensory and autonomic neuropathy 1E
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.