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Crater Lake Apoyo Revisited - Population Genetics of an Emerging Species Flock

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Amphi-Panamic Geminates of Snook (Percoidei: Centropomidae) Provide a Calibration of the Divergence Rate in the Mitochondrial DNA Control Region of Fishes
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Genetic diversity in European and Mediterranean faba bean germ plasm revealed by RAPD markers
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Incompatibility and assortative mating in the Midas cichlid
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When is sympatric speciation truly adaptive? An analysis of the joint evolution of resource utilization and assortative mating
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Population genomics and speciation
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Apoyo caldera, Nicaragua: A major quaternary silicic eruptive center
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Conservation: Losing Biodiversity by Reverse Speciation
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A genomic view of introgression and hybrid speciation
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Hybridization and adaptive radiation
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Adaptation from standing genetic variation
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Adaptation in the age of ecological genomics: insights from parallelism and convergence
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What do we need to know about speciation?
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Phylogeny and biogeography of 91 species of heroine cichlids (Teleostei: Cichlidae) based on sequences of the cytochrome b gene
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Phylogenetic relationships of Middle American cichlids (Cichlidae, Heroini) based on combined evidence from nuclear genes, mtDNA, and morphology
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Not a simple case – A first comprehensive phylogenetic hypothesis for the Midas cichlid complex in Nicaragua (Teleostei: Cichlidae: Amphilophus)
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Considering evolutionary processes in conservation biology
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The stages of vertebrate evolutionary radiation
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Interactions among quantitative traits in the course of sympatric speciation
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On the origin of species by sympatric speciation
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Water-based non-stick hydrophobic coatings
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Recurrent origin of a sexually selected trait in Xiphophorus fishes inferred from a molecular phylogeny
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Genetics of speciation
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High rate of calculation errors in mismatch distribution analysis results in numerous false inferences of biological importance
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Sympatric speciation in Nicaraguan crater lake cichlid fish
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Evidence for sympatric speciation?
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Hybrid speciation
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Speciation through sensory drive in cichlid fish
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Adaptive evolution and explosive speciation: the cichlid fish model
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Transgressive segregation, adaptation and speciation
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Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers.
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Persistence of neutral polymorphisms in Lake Victoria cichlid fish
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Hybridization as a stimulus for the evolution of invasiveness in plants?
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Sympatric Speciation
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Reconstructing the Origin ofHelianthus deserticola: Survival and Selection on the Desert Floor
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Weak Disruptive Selection and Incomplete Phenotypic Divergence in Two Classic Examples of Sympatric Speciation: Cameroon Crater Lake Cichlids
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Human-induced water turbidity alters selection on sexual displays in sticklebacks
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TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
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SplitsTree: analyzing and visualizing evolutionary data.
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Phyutility: a phyloinformatics tool for trees, alignments and molecular data
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Mitochondrial portraits of human populations using median networks.
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Inference of Population Structure Using Multilocus Genotype Data
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Inference of Population Structure Using Multilocus Genotype Data: Linked Loci and Correlated Allele Frequencies
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Origin and Speciation of Haplochromine Fishes in East African Crater Lakes Investigated by the Analysis of Their mtDNA, Mhc Genes, and SINEs
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Neighbor-Net: An Agglomerative Method for the Construction of Phylogenetic Networks
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AFLP: a new technique for DNA fingerprinting
inferredcites →https://doi.org/10.1093/nar/25.24.4876openalex-snapshot
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
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Median-joining networks for inferring intraspecific phylogenies
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Population growth makes waves in the distribution of pairwise genetic differences.
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A model of sympatric speciation by sexual selection
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A simple method of removing the effect of a bottleneck and unequal population sizes on pairwise genetic distances
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Incipient speciation in sympatric Nicaraguan crater lake cichlid fishes: sexual selection versus ecological diversification
inferredcites →https://doi.org/10.1098/rspb.2004.2870openalex-snapshot
Water turbidity by algal blooms causes mating system breakdown in a shallow-water fish, the sand goby Pomatoschistus minutus
inferredcites →https://doi.org/10.1098/rspb.2005.3231openalex-snapshot
An invasive lineage of sculpins, Cottus sp. (Pisces, Teleostei) in the Rhine with new habitat adaptations has originated from hybridization between old phylogeographic groups
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Speciation genetics: current status and evolving approaches
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Genomic approaches with natural fish populations
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The Midas cichlid species complex: incipient sympatric speciation in Nicaraguan cichlid fishes?
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Detecting the number of clusters of individuals using the software structure : a simulation study
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Speciation in reverse: morphological and genetic evidence of the collapse of a three‐spined stickleback ( Gasterosteus aculeatus ) species pair
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04488.xopenalex-snapshot
Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05738.xopenalex-snapshot
Genomic signatures of divergent selection and speciation patterns in a ‘natural experiment’, the young parallel radiations of N icaraguan crater lake cichlid fishes
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What, if anything, is sympatric speciation?
inferredcites →https://doi.org/10.1111/j.1420-9101.2009.01816.xopenalex-snapshot
Space, sympatry and speciation
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Comparing three different methods to detect selective loci using dominant markers
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Fitness Landscapes and the Origin of Species
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Ecological speciation
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Analysis of multilocus fingerprinting data sets containing missing data
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Inference of population structure using multilocus genotype data: dominant markers and null alleles
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ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE
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EXTRAORDINARY AFLP FINGERPRINT SIMILARITY DESPITE STRONG ASSORTATIVE MATING BETWEEN REEF FISH COLOR MORPHOSPECIES
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00447.xopenalex-snapshot
ADAPTIVE SYMPATRIC SPECIATION OF POLYCHROMATIC “ROUNDFIN” SAILFIN SILVERSIDE FISH IN LAKE MATANO (SULAWESI)
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00736.xopenalex-snapshot
COLOR ASSORTATIVE MATING CONTRIBUTES TO SYMPATRIC DIVERGENCE OF NEOTROPICAL CICHLID FISH
inferredcites →https://doi.org/10.1111/j.1558-5646.2012.01755.xopenalex-snapshot
CRATER LAKE COLONIZATION BY NEOTROPICAL CICHLID FISHES
inferredcites →https://doi.org/10.1126/science.1146035openalex-snapshot
Facultative Mate Choice Drives Adaptive Hybridization
inferredcites →https://doi.org/10.1126/science.1181661openalex-snapshot
On the Origin of Species by Natural and Sexual Selection
inferredcites →https://doi.org/10.1126/science.276.5320.1855openalex-snapshot
A Role for Ecotones in Generating Rainforest Biodiversity
inferredcites →https://doi.org/10.1126/science.277.5333.1808openalex-snapshot
Cichlid Fish Diversity Threatened by Eutrophication That Curbs Sexual Selection
inferredcites →https://doi.org/10.1146/annurev.ecolsys.28.1.593openalex-snapshot
The Role of Hybridization and Introgression in the Diversification of Animals
inferredcites →https://doi.org/10.1146/annurev.ecolsys.38.091206.095804openalex-snapshot
Sympatric Speciation: Models and Empirical Evidence
inferredcites →https://doi.org/10.1146/annurev.ecolsys.39.110707.173532openalex-snapshot
Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation?
inferredcites →https://doi.org/10.1146/annurev.genet.35.102401.085719openalex-snapshot
Genetics and the Fitness of Hybrids
inferredcites →https://doi.org/10.1186/1471-2148-10-326openalex-snapshot
Phylogeography, colonization and population history of the Midas cichlid species complex (Amphilophus spp.) in the Nicaraguan crater lakes
inferredcites →https://doi.org/10.1186/1471-2148-9-276openalex-snapshot
Genomic signatures of local directional selection in a high gene flow marine organism; the Atlantic cod (Gadus morhua)
inferredcites →https://doi.org/10.1186/1471-2148-9-283openalex-snapshot
Phenotypic novelty in experimental hybrids is predicted by the genetic distance between species of cichlid fish
inferredcites →https://doi.org/10.1186/1471-2164-14-171openalex-snapshot
Transcriptomics of morphological color change in polychromatic Midas cichlids
inferredcites →https://doi.org/10.1186/1741-7007-8-60openalex-snapshot
Rapid sympatric ecological differentiation of crater lake cichlid fishes within historic times
inferredcites →https://doi.org/10.1371/journal.pgen.1000930openalex-snapshot
Genetic Evidence for Hybrid Trait Speciation in Heliconius Butterflies
inferredcites →https://doi.org/10.1534/g3.112.003897openalex-snapshot
A Hybrid Genetic Linkage Map of Two Ecologically and Morphologically Divergent Midas Cichlid Fishes (Amphilophusspp.) Obtained by Massively Parallel DNA Sequencing (ddRADSeq)
inferredcites →https://doi.org/10.1534/genetics.105.047985openalex-snapshot
Chromosome Inversions, Local Adaptation and Speciation
inferredcites →https://doi.org/10.1534/genetics.107.083246openalex-snapshot
Impact of Amplified Fragment Length Polymorphism Size Homoplasy on the Estimation of Population Genetic Diversity and the Detection of Selective Loci
inferredcites →https://doi.org/10.1534/genetics.107.084541openalex-snapshot
An Approximate Bayesian Computation Approach to Overcome Biases That Arise When Using Amplified Fragment Length Polymorphism Markers to Study Population Structure
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A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective
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Systematics and the Origin of Species from the View-Point of a Zoologist
inferredcites →https://doi.org/10.2988/06-37.1openalex-snapshot
Three new species of cichlid fishes (Teleostei: Cichlidae) from Lake Apoyo, Nicaragua
inferredcites →https://doi.org/10.2988/09-20.1openalex-snapshot
Description of two new species of the Midas cichlid complex (Teleostei: Cichlidae) from Lake Apoyo, Nicaragua
inferredcites →https://doi.org/10.4161/cib.2.4.8386openalex-snapshot
Magic trait Electric Organ Discharge (EOD)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Generic assignment of Leuciscus kurui Bogutskaya from the upper Tigris drainage, and a replacement name for Alburnus kurui Mangit & Yerli (Teleostei: Leuciscidae)
inferred← citeshttps://doi.org/10.1002/bies.201900047openalex-snapshot
Searching for Sympatric Speciation in the Genomic Era
inferred← citeshttps://doi.org/10.1002/evl3.78openalex-snapshot
Don't throw out the sympatric speciation with the crater lake water: fine-scale investigation of introgression provides equivocal support for causal role of secondary gene flow in one of the clearest examples of sympatric speciation
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Cichlid fishes as models of ecological diversification: patterns, mechanisms, and consequences
inferred← citeshttps://doi.org/10.1038/ncomms6168openalex-snapshot
Parallel evolution of Nicaraguan crater lake cichlid fishes via non-parallel routes
inferred← citeshttps://doi.org/10.1101/217984openalex-snapshot
Don’t throw out the sympatric species with the crater lake water: fine-scale investigation of introgression provides weak support for functional role of secondary gene flow in one of the clearest examples of sympatric speciation
inferred← citeshttps://doi.org/10.1111/evo.12674openalex-snapshot
Complex histories of repeated gene flow in Cameroon crater lake cichlids cast doubt on one of the clearest examples of sympatric speciation
inferred← citeshttps://doi.org/10.11118/978-80-7509-900-6openalex-snapshot
Bezobratlí živočichové v regionálním rozvoji Nikaragui: region Carazo
inferred← citeshttps://doi.org/10.11118/978-80-7509-901-3openalex-snapshot
Chladnokrevní obratlovci v Nikaragui a její regionální rozvoj
inferred← citeshttps://doi.org/10.1371/journal.pgen.1006157openalex-snapshot
Multispecies Outcomes of Sympatric Speciation after Admixture with the Source Population in Two Radiations of Nicaraguan Crater Lake Cichlids
inferred← citeshttps://doi.org/10.1371/journal.pone.0123056openalex-snapshot
†Kenyaichthyidae fam. nov. and †Kenyaichthys gen. nov. – First Record of a Fossil Aplocheiloid Killifish (Teleostei, Cyprinodontiformes)
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Biodiversity and conservation of conservation priority fish species in the Nicaraguan volcanic crater lakes
inferred← citeshttps://doi.org/10.3897/vz.66.e31534openalex-snapshot
Diversity and evolution of the Middle American cichlid fishes (Teleostei: Cichlidae) with revised classification
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