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A Retrospective Approach to Testing the DNA Barcoding Method

https://doi.org/10.1371/journal.pone.0077882

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Integrating DNA barcode data and taxonomic practice: Determination, discovery, and description

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Molecular cloning: A laboratory manual

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Distinguishing historical fragmentation from a recent population decline – shrinking or pre-shrunk skink from New Zealand?

inferredcites →https://doi.org/10.1016/j.foodres.2008.07.005openalex-snapshot

DNA barcoding detects market substitution in North American seafood

inferredcites →https://doi.org/10.1016/j.foodres.2009.10.009openalex-snapshot

DNA barcoding reveals fraudulent substitutions in shark seafood products: The Italian case of “palombo” (Mustelus spp.)

inferredcites →https://doi.org/10.1016/j.ympev.2006.11.021openalex-snapshot

A comprehensive DNA sequence library is essential for identification with DNA barcodes

inferredcites →https://doi.org/10.1016/j.ympev.2007.06.008openalex-snapshot

Phylogeography of the spotted skink (Oligosoma lineoocellatum) and green skink (O. chloronoton) species complex (Lacertilia: Scincidae) in New Zealand reveals pre-Pleistocene divergence

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Comparative phylogeography of three skink species (Oligosoma moco, O. smithi, O. suteri; Reptilia: Scincidae) in northeastern New Zealand

inferredcites →https://doi.org/10.1016/j.ympev.2008.05.008openalex-snapshot

Phylogeography of two New Zealand lizards: McCann’s skink (Oligosoma maccanni) and the brown skink (O. zelandicum)

inferredcites →https://doi.org/10.1016/j.ympev.2009.03.021openalex-snapshot

Origin, diversification, and systematics of the New Zealand skink fauna (Reptilia: Scincidae)

inferredcites →https://doi.org/10.1016/s0169-5347(02)00040-xopenalex-snapshot

The encyclopedia of life

inferredcites →https://doi.org/10.1038/sj.hdy.6800858openalex-snapshot

Taxonomy: DNA barcodes: recent successes and future prospects

inferredcites →https://doi.org/10.1073/pnas.0406166101openalex-snapshot

Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator

inferredcites →https://doi.org/10.1073/pnas.0510466103openalex-snapshot

DNA barcodes distinguish species of tropical Lepidoptera

inferredcites →https://doi.org/10.1073/pnas.0511318103openalex-snapshot

DNA barcodes reveal cryptic host-specificity within the presumed polyphagous members of a genus of parasitoid flies (Diptera: Tachinidae)

inferredcites →https://doi.org/10.1073/pnas.0700050104openalex-snapshot

DNA barcodes affirm that 16 species of apparently generalist tropical parasitoid flies (Diptera, Tachinidae) are not all generalists

inferredcites →https://doi.org/10.1073/pnas.0712181105openalex-snapshot

DNA barcodes and cryptic species of skipper butterflies in the genus Perichares in Area de Conservación Guanacaste, Costa Rica

inferredcites →https://doi.org/10.1073/pnas.0805319105openalex-snapshot

Extreme diversity of tropical parasitoid wasps exposed by iterative integration of natural history, DNA barcoding, morphology, and collections

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Bayesian species delimitation using multilocus sequence data

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A new skink species ( Oligosoma taumakae sp. nov.; Reptilia: Scincidae) from the Open Bay Islands, New Zealand

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Taxonomic revision of the marbled skink ( Cyclodina oliveri , Reptilia: Scincidae) species complex, with a description of a new species

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Dynamic taxonomy versus field identification: A dilemma for New Zealand herpetologists

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The New Zealand Scincidae (Reptilia: Lacertilia); a taxonomic and zoogeographic study

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Leiolopisma stenotis , n. sp., (Reptilia: Lacertilia: Scincidae) from Stewart Island, New Zealand

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South Island skinks of the genus Oligosoma: description of O. longipes n. sp. with redescription of O. otagense (McCann) and O. waimatense (McCann)

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Conservation status of New Zealand reptiles, 2009

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Four new species and one new subspecies of skinks, genus Leiolopisma (Reptilia: Lacertilia: Scincidae) from New Zealand

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The Taxonomic Impediment Overcome: NSF's Partnerships for Enhancing Expertise in Taxonomy (PEET) as a Model

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The Promise of DNA Barcoding for Taxonomy

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Sequence-Based Species Delimitation for the DNA Taxonomy of Undescribed Insects

inferredcites →https://doi.org/10.1080/10635150600969864openalex-snapshot

DNA Barcoding and Taxonomy in Diptera: A Tale of High Intraspecific Variability and Low Identification Success

inferredcites →https://doi.org/10.1080/10635150600969898openalex-snapshot

DNA Barcoding Will Often Fail to Discover New Animal Species over Broad Parameter Space

inferredcites →https://doi.org/10.1080/10635150802406343openalex-snapshot

The Use of Mean Instead of Smallest Interspecific Distances Exaggerates the Size of the “Barcoding Gap” and Leads to Misidentification

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Is a Large-Scale DNA-Based Inventory of Ancient Life Possible?

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A Genomic Perspective on the Shortcomings of Mitochondrial DNA for “Barcoding” Identification

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

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Evaluation of a Bayesian Coalescent Method of Species Delimitation

inferredcites →https://doi.org/10.1093/sysbio/syt033openalex-snapshot

Delimiting Species Using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: A Revised Method and Evaluation on Simulated Data Sets

inferredcites →https://doi.org/10.1098/rsbl.2003.0025openalex-snapshot

Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species

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DNA barcodes for 1/1000 of the animal kingdom

inferredcites →https://doi.org/10.1098/rsbl.2010.0557openalex-snapshot

Geographic variation in the age of temperate-zone reptile and amphibian species: Southern Hemisphere species are older

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Biological identifications through DNA barcodes

inferredcites →https://doi.org/10.1098/rspb.2007.0062openalex-snapshot

DNA barcoding cannot reliably identify species of the blowfly genusProtocalliphora(Diptera: Calliphoridae)

inferredcites →https://doi.org/10.1098/rspb.2007.1035openalex-snapshot

Limited performance of DNA barcoding in a diverse community of tropical butterflies

inferredcites →https://doi.org/10.1098/rspb.2007.1290openalex-snapshot

Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata

inferredcites →https://doi.org/10.1098/rspb.2010.1089openalex-snapshot

Complete DNA barcode reference library for a country's butterfly fauna reveals high performance for temperate Europe

inferredcites →https://doi.org/10.1098/rstb.2005.1713openalex-snapshot

DNA barcodes for biosecurity: invasive species identification

inferredcites →https://doi.org/10.1098/rstb.2005.1715openalex-snapshot

Wedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcoding

inferredcites →https://doi.org/10.1098/rstb.2005.1716openalex-snapshot

DNA barcoding Australia's fish species

inferredcites →https://doi.org/10.1098/rstb.2005.1717openalex-snapshot

Deciphering amphibian diversity through DNA barcoding: chances and challenges

inferredcites →https://doi.org/10.1111/1755-0998.12010openalex-snapshot

DNA barcoding N eotropical fishes: recent advances from the P ampa P lain, A rgentina

inferredcites →https://doi.org/10.1111/1755-0998.12022openalex-snapshot

Cryptic diversity in flathead fishes ( S corpaeniformes: P latycephalidae) across the I ndo‐ W est P acific uncovered by DNA barcoding

inferredcites →https://doi.org/10.1111/1755-0998.12046openalex-snapshot

The seven deadly sins of DNA barcoding

inferredcites →https://doi.org/10.1111/1755-0998.12050openalex-snapshot

Cold Code: the global initiative to DNA barcode amphibians and nonavian reptiles

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Comparative phylogeography reveals pre-decline population structure of New Zealand Cyclodina (Reptilia: Scincidae) species

inferredcites →https://doi.org/10.1111/j.1096-0031.2003.00008.xopenalex-snapshot

Myth of the molecule: DNA barcodes for species cannot replace morphology for identification and classification

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Losing the plot: DNA “barcodes” and taxonomy

inferredcites →https://doi.org/10.1111/j.1096-0031.2007.00174.xopenalex-snapshot

DNA Barcoding is not enough: mismatch of taxonomy and genealogy in New Zealand grasshoppers (Orthoptera: Acrididae).

inferredcites →https://doi.org/10.1111/j.1365-2699.2007.01848.xopenalex-snapshot

Genetic divergences pre‐date Pleistocene glacial cycles in the New Zealand speckled skink, Oligosoma infrapunctatum

inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03832.xopenalex-snapshot

Origin and post‐colonization evolution of the Chatham Islands skink (Oligosoma nigriplantare nigriplantare)

inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03864.xopenalex-snapshot

A SINE of restricted gene flow across the Alpine Fault: phylogeography of the New Zealand common skink (Oligosoma nigriplantare polychroma)

inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04720.xopenalex-snapshot

An integrative approach to species discovery in odonates: from character‐based DNA barcoding to ecology

inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05235.xopenalex-snapshot

A fuzzy‐set‐theory‐based approach to analyse species membership in DNA barcoding

inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05239.xopenalex-snapshot

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05550.xopenalex-snapshot

Bioinformatic challenges for DNA metabarcoding of plants and animals

inferredcites →https://doi.org/10.1111/j.1420-9101.2011.02417.xopenalex-snapshot

Are reptile and amphibian species younger in the Northern Hemisphere than in the Southern Hemisphere?

inferredcites →https://doi.org/10.1111/j.1471-8286.2006.01641.xopenalex-snapshot

DNA barcoding using chitons (genus Mopalia)

inferredcites →https://doi.org/10.1111/j.1471-8286.2007.01996.xopenalex-snapshot

DNA BARCODING: Barcoding corals: limited by interspecific divergence, not intraspecific variation

inferredcites →https://doi.org/10.1111/j.1755-0998.2008.02235.xopenalex-snapshot

caos software for use in character‐based DNA barcoding

inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02631.xopenalex-snapshot

DNA barcoding and the mediocrity of morphology

inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02763.xopenalex-snapshot

Mitochondrial DNA barcoding detects some species that are real, and some that are not

inferredcites →https://doi.org/10.1111/j.1755-0998.2012.03119.xopenalex-snapshot

An emergent science on the brink of irrelevance: a review of the past 8 years of DNA barcoding

inferredcites →https://doi.org/10.1126/science.303.5656.285openalex-snapshot

Taxonomy: Impediment or Expedient?

inferredcites →https://doi.org/10.1139/z04-041openalex-snapshot

Biological identification of springtails (Hexapoda: Collembola) from the Canadian Arctic, using mitochondrial DNA barcodes

inferredcites →https://doi.org/10.1139/z05-024openalex-snapshot

Identifying spiders through DNA barcodes

inferredcites →https://doi.org/10.1139/z05-025openalex-snapshot

Comment on "Identifying spiders through DNA barcodes"

inferredcites →https://doi.org/10.11646/zootaxa.1882.1.3openalex-snapshot

A rare alpine skink Oligosoma pikitanga n. sp. (Reptilia: Scincidae) from Llawrenny Peaks, Fiordland, New Zealand

inferredcites →https://doi.org/10.11646/zootaxa.2271.1.4openalex-snapshot

The Barrier skink Oligosoma judgei n. sp. (Reptilia: Scincidae) from the Darran and Takitimu Mountains, South Island, New Zealand

inferredcites →https://doi.org/10.11646/zootaxa.2782.1.1openalex-snapshot

Phylogeography and taxonomic revision of the New Zealand cryptic skink (Oligosoma inconspicuum; Reptilia: Scincidae) species complex

inferredcites →https://doi.org/10.1186/1471-2148-12-245openalex-snapshot

Barcoding against a paradox? Combined molecular species delineations reveal multiple cryptic lineages in elusive meiofaunal sea slugs

inferredcites →https://doi.org/10.1186/1742-9994-4-8openalex-snapshot

Does the DNA barcoding gap exist? – a case study in blue butterflies (Lepidoptera: Lycaenidae)

inferredcites →https://doi.org/10.1371/journal.pbio.0020312openalex-snapshot

Identification of Birds through DNA Barcodes

inferredcites →https://doi.org/10.1371/journal.pbio.0020354openalex-snapshot

DNA Barcoding: Promise and Pitfalls

inferredcites →https://doi.org/10.1371/journal.pbio.0030422openalex-snapshot

DNA Barcoding: Error Rates Based on Comprehensive Sampling

inferredcites →https://doi.org/10.1371/journal.pbio.1001127openalex-snapshot

How Many Species Are There on Earth and in the Ocean?

inferredcites →https://doi.org/10.1371/journal.pone.0030490openalex-snapshot

DNA Barcoding of Recently Diverged Species: Relative Performance of Matching Methods

inferredcites →https://doi.org/10.1371/journal.pone.0034599openalex-snapshot

Phylogeography of the Endangered Otago Skink, Oligosoma otagense: Population Structure, Hybridisation and Genetic Diversity in Captive Populations

inferredcites →https://doi.org/10.1603/0022-0493-99.4.1037openalex-snapshot

Standard Percent DNA Sequence Difference for Insects Does Not Predict Species Boundaries

inferredcites →https://doi.org/10.1670/07-110.1openalex-snapshot

Taxonomic Revision of the New Zealand Copper Skink (Cyclodina aenea: Squamata: Scincidae) Species Complex, with Descriptions of Two New Species

inferredcites →https://doi.org/10.2307/1466968openalex-snapshot

Differentiation of the Members of the New Zealand Leiolopisma nigriplantare Species Complex (Lacertilia: Scincidae)

inferredcites →https://doi.org/10.3897/zookeys.16.239openalex-snapshot

Prospects for using DNA barcoding to identify spiders in species-rich genera

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