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Spatial Ecology of Bacteria at the Microscale in Soil

https://doi.org/10.1371/journal.pone.0087217
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/rcm.1929openalex-snapshot
Vertical gradients of δ 15 N and δ 18 O in soil atmospheric N 2 O—temporal dynamics in a sandy soil
inferredcites →https://doi.org/10.1007/0-387-31144-0openalex-snapshot
Case Studies in Spatial Point Process Modeling
inferredcites →https://doi.org/10.1007/0-387-31144-0_1openalex-snapshot
Fundamentals of Point Process Statistics
inferredcites →https://doi.org/10.1007/978-1-4020-6216-2openalex-snapshot
The Spatial Distribution of Microbes in the Environment
inferredcites →https://doi.org/10.1007/978-1-4020-6216-2_3openalex-snapshot
Bacterial Interactions At The Microscale – Linking Habitat To Function In Soil
inferredcites →https://doi.org/10.1007/s00041-003-0012-2openalex-snapshot
Anisotropic Analysis of Some Gaussian Models
inferredcites →https://doi.org/10.1007/s00248-002-2021-0openalex-snapshot
In Situ Spatial Patterns of Soil Bacterial Populations, Mapped at Multiple Scales, in an Arable Soil
inferredcites →https://doi.org/10.1016/j.geoderma.2011.04.013openalex-snapshot
Extraction of three-dimensional soil pore space from microtomography images using a geometrical approach
inferredcites →https://doi.org/10.1016/j.soilbio.2008.05.021openalex-snapshot
The influence of soil properties on the structure of bacterial and fungal communities across land-use types
inferredcites →https://doi.org/10.1016/s0038-0717(02)00287-0openalex-snapshot
Spatial variability of 2,4-dichlorophenoxyacetic acid (2,4-D) mineralisation potential at a millimetre scale in soil
inferredcites →https://doi.org/10.1016/s0038-0717(03)00243-8openalex-snapshot
A novel method for characterizing the microscale 3D spatial distribution of bacteria in soil
inferredcites →https://doi.org/10.1016/s0168-6496(01)00148-9openalex-snapshot
Quantification of the in situ distribution of soil bacteria by large-scale imaging of thin sections of undisturbed soil
inferredcites →https://doi.org/10.1016/s0168-6496(02)00373-2openalex-snapshot
The ecology of transfer of mobile genetic elements
inferredcites →https://doi.org/10.1016/s0168-6496(03)00027-8openalex-snapshot
Spatial distribution of bacterial communities and their relationships with the micro-architecture of soil
inferredcites →https://doi.org/10.1016/s0304-3800(02)00058-3openalex-snapshot
Spatial structure and the survival of an inferior competitor: a theoretical model of neighbourhood competition in plants
inferredcites →https://doi.org/10.1016/s0929-1393(99)00028-1openalex-snapshot
Phylogenetic diversity of bacterial communities differing in degree of proximity of Lolium perenne and Trifolium repens roots
inferredcites →https://doi.org/10.1023/a:1020565523615openalex-snapshot
Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms
inferredcites →https://doi.org/10.1034/j.1600-0706.2000.900208.xopenalex-snapshot
Ecosystem response of pasture soil communities to fumigation‐induced microbial diversity reductions: an examination of the biodiversity–ecosystem function relationship
inferredcites →https://doi.org/10.1038/ismej.2007.53openalex-snapshot
Pyrosequencing enumerates and contrasts soil microbial diversity
inferredcites →https://doi.org/10.1038/ismej.2011.159openalex-snapshot
Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients
inferredcites →https://doi.org/10.1038/ncomms2431openalex-snapshot
Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity
inferredcites →https://doi.org/10.1038/nrmicro2119-c2openalex-snapshot
To sequence or not to sequence the whole-soil metagenome?
inferredcites →https://doi.org/10.1046/j.0021-8790.2004.00788.xopenalex-snapshot
Spatial dynamics of mutualistic interactions
inferredcites →https://doi.org/10.1046/j.1461-0248.2000.00127.xopenalex-snapshot
Are communities saturated? On the relationship between α, β and γ diversity
inferredcites →https://doi.org/10.1046/j.1469-8137.2003.00662.xopenalex-snapshot
Plant nitrogen capture from organic matter as affected by spatial dispersion, interspecific competition and mycorrhizal colonization
inferredcites →https://doi.org/10.1073/pnas.0807935105openalex-snapshot
Defined spatial structure stabilizes a synthetic multispecies bacterial community
inferredcites →https://doi.org/10.1086/284280openalex-snapshot
Spatial Heterogeneity, Indirect Interactions, and the Coexistence of Prey Species
inferredcites →https://doi.org/10.1086/523951openalex-snapshot
Plants May Alter Competition by Modifying Nutrient Bioavailability in Rhizosphere: A Modeling Approach
inferredcites →https://doi.org/10.1111/1467-9469.00115openalex-snapshot
Log Gaussian Cox Processes
inferredcites →https://doi.org/10.1111/1574-6976.12023openalex-snapshot
Micro-scale determinants of bacterial diversity in soil
inferredcites →https://doi.org/10.1111/an.1999.40.2.6openalex-snapshot
The Massachusetts Institute of Technology
inferredcites →https://doi.org/10.1111/j.1461-0248.2009.01360.xopenalex-snapshot
Global patterns in belowground communities
inferredcites →https://doi.org/10.1111/j.1462-2920.2006.01098.xopenalex-snapshot
Maintenance of soil functioning following erosion of microbial diversity
inferredcites →https://doi.org/10.1111/j.1462-2920.2007.01335.xopenalex-snapshot
Decline of soil microbial diversity does not influence the resistance and resilience of key soil microbial functional groups following a model disturbance
inferredcites →https://doi.org/10.1111/j.1574-6941.2003.tb01040.xopenalex-snapshot
Using ecological diversity measures with bacterial communities
inferredcites →https://doi.org/10.1111/j.1574-6941.2005.00037.xopenalex-snapshot
In situ quantitation of the spatial scale of calling distances and population density-independent N-acylhomoserine lactone-mediated communication by rhizobacteria colonized on plant roots
inferredcites →https://doi.org/10.1111/j.1574-6941.2008.00446.xopenalex-snapshot
Limited diffusive fluxes of substrate facilitate coexistence of two competing bacterial strains
inferredcites →https://doi.org/10.1111/j.1574-6941.2012.01435.xopenalex-snapshot
Ecosystem processes and interactions in a morass of diversity
inferredcites →https://doi.org/10.1128/aem.02686-05openalex-snapshot
Potential of a 16S rRNA-Based Taxonomic Microarray for Analyzing the Rhizosphere Effects of Maize on Agrobacterium spp. and Bacterial Communities
inferredcites →https://doi.org/10.1128/aem.02870-10openalex-snapshot
Lack of Correlation between Turnover of Low-Molecular-Weight Dissolved Organic Carbon and Differences in Microbial Community Composition or Growth across a Soil pH Gradient
inferredcites →https://doi.org/10.1128/aem.56.3.782-787.1990openalex-snapshot
High diversity in DNA of soil bacteria
inferredcites →https://doi.org/10.1128/jb.01290-08openalex-snapshot
Social Interactions and Distribution of Bacillus subtilis Pherotypes at Microscale
inferredcites →https://doi.org/10.1146/annurev-phyto-072910-095232openalex-snapshot
A Coevolutionary Framework for Managing Disease-Suppressive Soils
inferredcites →https://doi.org/10.1201/9780203496930openalex-snapshot
Statistical Inference and Simulation for Spatial Point Processes
inferredcites →https://doi.org/10.1371/journal.pcbi.1000853openalex-snapshot
Statistical Analysis of 3D Images Detects Regular Spatial Distributions of Centromeres and Chromocenters in Animal and Plant Nuclei
inferredcites →https://doi.org/10.1371/journal.pone.0010834openalex-snapshot
Bacterial Biodiversity-Ecosystem Functioning Relations Are Modified by Environmental Complexity
inferredcites →https://doi.org/10.18637/jss.v012.i06openalex-snapshot
spatstat : An R Package for Analyzing Spatial Point Patterns
inferredcites →https://doi.org/10.1890/04-0922openalex-snapshot
EFFECTS OF BIODIVERSITY ON ECOSYSTEM FUNCTIONING: A CONSENSUS OF CURRENT KNOWLEDGE
inferredcites →https://doi.org/10.2307/1411openalex-snapshot
The Relation Between the Number of Species and the Number of Individuals in a Random Sample of an Animal Population
inferredcites →https://doi.org/10.2307/2258613openalex-snapshot
Plant-Induced Soil Chemical Patterns in Some Shrub-Dominated Semi-Desert Ecosystems of Utah
inferredcites →https://doi.org/10.2307/2287940openalex-snapshot
Random Fields: Analysis and Synthesis.
inferredcites →https://doi.org/10.2307/3545983openalex-snapshot
Regulation of Predator-Prey Systems through Spatial Interactions: A Possible Solution to the Paradox of Enrichment
inferredcites →https://doi.org/10.2307/5503openalex-snapshot
Species Interactions, Local and Regional Processes, and Limits to the Richness of Ecological Communities: A Theoretical Perspective
inferredcites →https://doi.org/10.3732/ajb.1000498openalex-snapshot
The generation and maintenance of diversity in microbial communities

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.3950316openalex-extracted
inferred← citeshttps://doi.org/10.2139/ssrn.4579997openalex-extracted
Response of Soil Microbial Carbon Allocation Patterns to Induction of Viral Lysis in Aggregate Size Fractions
inferred← citeshttps://doi.org/10.2139/ssrn.4828875openalex-extracted
inferred← citeshttps://doi.org/10.3897/zookeys.1224.131153zenodo-depositor-declared
Biodiversity restated: > 99.9% of global species in Soil Biota
inferred← citeshttps://doi.org/10.1002/2014gl061467openalex-snapshot
Invariant soil water potential at zero microbial respiration explained by hydrological discontinuity in dry soils
inferred← citeshttps://doi.org/10.1002/9781119413332.ch5openalex-snapshot
Modeling Microbial Dynamics and Heterotrophic Soil Respiration
inferred← citeshttps://doi.org/10.1002/adbi.201800048openalex-snapshot
Quantifying the Spatiotemporal Dynamics of Plant Root Colonization by Beneficial Bacteria in a Microfluidic Habitat
inferred← citeshttps://doi.org/10.1002/csan.21268openalex-snapshot
Unlocking the Secrets of Soil: Exploring the Microbiome and Its Applications—Part 1
inferred← citeshttps://doi.org/10.1002/csan.21313openalex-snapshot
Fostering Microbial Activity and Diversity in Agricultural Systems
inferred← citeshttps://doi.org/10.1002/ece3.11001openalex-snapshot
Biogeography and assembly processes of abundant and rare soil microbial taxa in the southern part of the Qilian Mountain National Park, China
inferred← citeshttps://doi.org/10.1002/ieam.4575openalex-snapshot
Scientific concepts and methods for moving persistence assessments into the 21st century
inferred← citeshttps://doi.org/10.1002/jpln.201600451openalex-snapshot
Microaggregates in soils
inferred← citeshttps://doi.org/10.1002/jpln.201700184openalex-snapshot
The microbial habitat in soil: Scale, heterogeneity and functional consequences
inferred← citeshttps://doi.org/10.1002/jpln.202100437openalex-snapshot
Soil health, soil genetic horizons and biodiversity #
inferred← citeshttps://doi.org/10.1002/jpln.202200357openalex-snapshot
Soil water status shapes nutrient cycling in agroecosystems from micrometer to landscape scales
inferred← citeshttps://doi.org/10.1002/jpln.202300149openalex-snapshot
Architecture of soil microaggregates: Advanced methodologies to explore properties and functions
inferred← citeshttps://doi.org/10.1002/mbo3.1144openalex-snapshot
Hidden heterogeneity and co‐occurrence networks of soil prokaryotic communities revealed at the scale of individual soil aggregates
inferred← citeshttps://doi.org/10.1002/mbo3.502openalex-snapshot
Analysis of nifH‐RNA reveals phylotypes related to Geobacter and Cyanobacteria as important functional components of the N2‐fixing community depending on depth and agricultural use of soil
inferred← citeshttps://doi.org/10.1002/vzj2.20315openalex-snapshot
Microbial mediated carbon and nitrogen cycling in the spatially heterogeneous vadose zone: A modeling study
inferred← citeshttps://doi.org/10.1007/698_2020_473openalex-snapshot
Mitigating Antimicrobial Resistance Risks When Using Reclaimed Municipal Wastewater for Agriculture
inferred← citeshttps://doi.org/10.1007/978-3-030-10777-2_1openalex-snapshot
Carbon Cycle Implications of Soil Microbial Interactions
inferred← citeshttps://doi.org/10.1007/978-3-030-14796-9_30openalex-snapshot
Global Consequences of Ubiquitous Hydrocarbon Utilizers
inferred← citeshttps://doi.org/10.1007/978-3-030-15516-2_4openalex-snapshot
Single-Cell Genomics and Metagenomics for Microbial Diversity Analysis
inferred← citeshttps://doi.org/10.1007/978-3-030-23269-6_11openalex-snapshot
Ecohydrological and Stoichiometric Controls on Soil Carbon and Nitrogen Dynamics in Drylands
inferred← citeshttps://doi.org/10.1007/978-3-030-45216-2_5openalex-snapshot
Forest and Rangeland Soil Biodiversity
inferred← citeshttps://doi.org/10.1007/978-3-030-51886-8_2openalex-snapshot
Soil Microbiological Recycling and the Virome Role in a Hectare Grassland
inferred← citeshttps://doi.org/10.1007/978-3-030-59875-4_9openalex-snapshot
Soil Organisms Within Arable Habitats
inferred← citeshttps://doi.org/10.1007/978-3-030-73507-4_18openalex-snapshot
Global Scenario of Soil Microbiome Research: Current Trends and Future Prospects
inferred← citeshttps://doi.org/10.1007/978-3-031-07434-9_8openalex-snapshot
Microbiome Applications for Sustainable Food Systems
inferred← citeshttps://doi.org/10.1007/978-3-031-15405-8_2openalex-snapshot
Soil Properties Responsible for Soil Loss
inferred← citeshttps://doi.org/10.1007/978-3-031-29544-7_1openalex-snapshot
The World of Microorganisms
inferred← citeshttps://doi.org/10.1007/978-3-032-12255-1_10openalex-snapshot
Compost Application for Soil Health and Nutrient Restoration: Benefits and Limitations
inferred← citeshttps://doi.org/10.1007/978-3-032-16045-4_5openalex-snapshot
Harnessing Beneficial Microbes for Biocontrol: A Sustainable Approach to Plant Disease Management
inferred← citeshttps://doi.org/10.1007/978-3-319-60053-6_30-1openalex-snapshot
Global Consequences of Ubiquitous Hydrocarbon Utilizers
inferred← citeshttps://doi.org/10.1007/978-3-319-66260-2_7openalex-snapshot
Potential Dissemination of ARB and ARGs into Soil Through the Use of Treated Wastewater for Agricultural Irrigation: Is It a True Cause for Concern?
inferred← citeshttps://doi.org/10.1007/978-981-10-5394-8_13openalex-snapshot
Microfluidic Platforms for Microbial
inferred← citeshttps://doi.org/10.1007/978-981-10-5708-3_13openalex-snapshot
Soil Metagenomics: A Tool for Sustainable Agriculture
inferred← citeshttps://doi.org/10.1007/978-981-13-6536-2_16openalex-snapshot
Rhizobacteria–Plant Interaction, Alleviation of Abiotic Stresses
inferred← citeshttps://doi.org/10.1007/978-981-13-8570-4_5openalex-snapshot
Relevance of Microbial Diversity in Implicating Soil Restoration and Health Management
inferred← citeshttps://doi.org/10.1007/978-981-15-4099-8_2openalex-snapshot
Recent Advances in Plant-Microbe Interaction
inferred← citeshttps://doi.org/10.1007/978-981-15-6529-8_11openalex-snapshot
Metagenomics in Agriculture: State-of-the-Art
inferred← citeshttps://doi.org/10.1007/978-981-15-6949-4_3openalex-snapshot
Metagenomics in Deciphering Microbial Communities Associated with Medicinal Plants
inferred← citeshttps://doi.org/10.1007/978-981-16-4843-4_16openalex-snapshot
Analyzing the Capabilities of Actinobacteria for Remediation Through Metagenomic Analysis of Contaminated Habitats
inferred← citeshttps://doi.org/10.1007/978-981-16-9507-0_10openalex-snapshot
Trichoderma Rhizosphere Competence, Suppression of Diseases, and Biotic Associations
inferred← citeshttps://doi.org/10.1007/978-981-99-2166-9_12openalex-snapshot
Millet’s Rhizosphere Metagenomics for the Understanding of Rhizobiome Multifunctionalities
inferred← citeshttps://doi.org/10.1007/978-981-99-3561-1_3openalex-snapshot
Mode of Application of Biofertilisers in the Crop Field
inferred← citeshttps://doi.org/10.1007/s00203-023-03482-3openalex-snapshot
Genome mining to identify valuable secondary metabolites and their regulation in Actinobacteria from different niches
inferred← citeshttps://doi.org/10.1007/s00248-016-0729-5openalex-snapshot
Sediments and Soils Act as Reservoirs for Taxonomic and Functional Bacterial Diversity in the Upper Mississippi River
inferred← citeshttps://doi.org/10.1007/s00248-016-0922-6openalex-snapshot
Ericoid Roots and Mycospheres Govern Plant-Specific Bacterial Communities in Boreal Forest Humus
inferred← citeshttps://doi.org/10.1007/s00248-020-01579-6openalex-snapshot
Inhibitions Dominate but Stimulations and Growth Rescues Are Not Rare Among Bacterial Isolates from Grains of Forest Soil
inferred← citeshttps://doi.org/10.1007/s00248-020-01660-0openalex-snapshot
Small-Scale Variability in Bacterial Community Structure in Different Soil Types
inferred← citeshttps://doi.org/10.1007/s00248-022-02115-4openalex-snapshot
A Matter of Metals: Copper but Not Cadmium Affects the Microbial Alpha-Diversity of Soils and Sediments — a Meta-analysis
inferred← citeshttps://doi.org/10.1007/s00374-016-1161-1openalex-snapshot
Interaction of minerals, organic matter, and microorganisms during biogeochemical interface formation as shown by a series of artificial soil experiments
inferred← citeshttps://doi.org/10.1007/s00374-019-01412-4openalex-snapshot
Effects of commercial microbial biostimulants on soil and root microbial communities and sugarcane yield
inferred← citeshttps://doi.org/10.1007/s00442-023-05322-zopenalex-snapshot
Nutrients strengthen density dependence of per-capita growth and mortality rates in the soil bacterial community
inferred← citeshttps://doi.org/10.1007/s11104-020-04820-wopenalex-snapshot
Are endophytes essential partners for plants and what are the prospects for metal phytoremediation?
inferred← citeshttps://doi.org/10.1007/s11104-022-05306-7openalex-snapshot
Linking rhizosphere processes across scales: Opinion
inferred← citeshttps://doi.org/10.1007/s11248-022-00331-9openalex-snapshot
Lactoferrin and its role in biotechnological strategies for plant defense against pathogens
inferred← citeshttps://doi.org/10.1007/s11270-023-06695-wopenalex-snapshot
Environmental Antibiotic Resistance: Recent Trends, Scope, and Relevance
inferred← citeshttps://doi.org/10.1007/s11440-025-02609-8openalex-snapshot
Microbial interactions during carbonate biomineralization via urea hydrolysis metabolic pathway
inferred← citeshttps://doi.org/10.1007/s12088-024-01294-7openalex-snapshot
Detection of Changes in Soil Microbial Community Physiological Profiles in Relation to Forest Types and Presence of Antibiotics Using BIOLOG EcoPlate
inferred← citeshttps://doi.org/10.1007/s12551-024-01185-7openalex-snapshot
Microbes in porous environments: from active interactions to emergent feedback
inferred← citeshttps://doi.org/10.1007/s13593-017-0421-2openalex-snapshot
Increasing soil carbon storage: mechanisms, effects of agricultural practices and proxies. A review
inferred← citeshttps://doi.org/10.1007/s13762-015-0807-0openalex-snapshot
Soil microbial functionality in response to dairy sewage sludge and mineral fertilisers application under winter rape
inferred← citeshttps://doi.org/10.1007/s42832-019-0017-7openalex-snapshot
Soil biofilms: microbial interactions, challenges, and advanced techniques for ex-situ characterization
inferred← citeshttps://doi.org/10.1007/s42832-020-0024-8openalex-snapshot
“Soil biofilms”: Misleading description of the spatial distribution of microbial biomass in soils
inferred← citeshttps://doi.org/10.1007/s42832-021-0089-zopenalex-snapshot
A novel microcosm to identify inherently competitive microorganisms with the ability to mineralize phytate in solum
inferred← citeshttps://doi.org/10.1016/b978-0-12-409547-2.14803-6openalex-snapshot
Specialized Metabolites for Bacterial Communication
inferred← citeshttps://doi.org/10.1016/b978-0-12-809633-8.20789-9openalex-snapshot
Models in Microbial Ecology
inferred← citeshttps://doi.org/10.1016/b978-0-12-811460-5.00026-1openalex-snapshot
Bibliography
inferred← citeshttps://doi.org/10.1016/b978-0-12-814849-5.00002-2openalex-snapshot
Metagenomic Achievements in Microbial Diversity Determination in Croplands
inferred← citeshttps://doi.org/10.1016/b978-0-12-822974-3.00095-1openalex-snapshot
Bacteria—Soil biology
inferred← citeshttps://doi.org/10.1016/b978-0-12-822974-3.00244-5openalex-snapshot
Climate change impacts on soil biology
inferred← citeshttps://doi.org/10.1016/b978-0-12-822974-3.00280-9openalex-snapshot
Pore-scale modelling of flow and transport phenomena in soils
inferred← citeshttps://doi.org/10.1016/b978-0-323-85797-0.00016-1openalex-snapshot
Legumes effect on nitrogen mineralization and microbial biomass potential in organic farming
inferred← citeshttps://doi.org/10.1016/b978-0-323-95592-8.00012-2openalex-snapshot
Soil biophysical modeling across scales
inferred← citeshttps://doi.org/10.1016/b978-0-323-96122-6.00009-8openalex-snapshot
Indoor and outdoor aeromicrobiology
inferred← citeshttps://doi.org/10.1016/b978-0-443-33032-2.00021-6openalex-snapshot
Epilogue: microbes, technology, and the future of drug discovery
inferred← citeshttps://doi.org/10.1016/b978-1-78548-146-8.50019-8openalex-snapshot
Bibliography
inferred← citeshttps://doi.org/10.1016/bs.agron.2014.10.005openalex-snapshot
Mineral–Organic Associations: Formation, Properties, and Relevance in Soil Environments
inferred← citeshttps://doi.org/10.1016/j.actaastro.2022.08.023openalex-snapshot
Simulated artificial interventions maintain species diversity of spatially structured microbial communities in closed ecosystem
inferred← citeshttps://doi.org/10.1016/j.advwatres.2015.05.020openalex-snapshot
Modeling the effect of soil meso- and macropores topology on the biodegradation of a soluble carbon substrate
inferred← citeshttps://doi.org/10.1016/j.aggene.2018.07.001openalex-snapshot
Metagenomic insights into the phylogenetic and functional profiles of soil microbiome from a managed mangrove in Malaysia
inferred← citeshttps://doi.org/10.1016/j.apsoil.2016.03.004openalex-snapshot
Spatial variability of microbial richness and diversity and relationships with soil organic carbon, texture and structure across an agricultural field
inferred← citeshttps://doi.org/10.1016/j.apsoil.2018.02.023openalex-snapshot
The influence of aggregate size fraction and horizon position on microbial community composition
inferred← citeshttps://doi.org/10.1016/j.apsoil.2020.103795openalex-snapshot
Invader-resident relatedness and soil management history shape patterns of invasion of compost microbial populations into agricultural soils
inferred← citeshttps://doi.org/10.1016/j.apsoil.2021.104302openalex-snapshot
Are microbial communities indicators of soil health in a dryland wheat cropping system?
inferred← citeshttps://doi.org/10.1016/j.apsoil.2022.104388openalex-snapshot
Complementary protein extraction methods increase the identification of the Park Grass Experiment metaproteome
inferred← citeshttps://doi.org/10.1016/j.apsoil.2022.104510openalex-snapshot
Composition of Soil Viral and Bacterial Communities after Long-Term Tillage, Fertilization, and Cover Cropping Management
inferred← citeshttps://doi.org/10.1016/j.apsoil.2024.105591openalex-snapshot
Biofilm-forming microorganisms in the rhizosphere to improve plant growth: Coping with abiotic stress and environmental pollution
inferred← citeshttps://doi.org/10.1016/j.bcab.2019.101060openalex-snapshot
Microbial inhabitants of agricultural land have potential to promote plant growth but they are liable to traditional practice of wheat (T. aestivum L) straw burning
inferred← citeshttps://doi.org/10.1016/j.biortech.2020.123742openalex-snapshot
Synergistic effect of biofilm growth and cadmium adsorption via compositional changes of extracellular matrix in montmorillonite system
inferred← citeshttps://doi.org/10.1016/j.cageo.2022.105240openalex-snapshot
Generic tool for numerical simulation of transformation-diffusion processes in complex volume geometric shapes: Application to microbial decomposition of organic matter
inferred← citeshttps://doi.org/10.1016/j.catena.2020.105000openalex-snapshot
Spatial cross-correlation between physicochemical and microbiological variables at superficial soil with different levels of degradation
inferred← citeshttps://doi.org/10.1016/j.cels.2022.05.004openalex-snapshot
Localization of signaling receptors maximizes cellular information acquisition in spatially structured natural environments
inferred← citeshttps://doi.org/10.1016/j.cossms.2025.101222openalex-snapshot
Designing biofilm architecture through depletion-mediated self-assembly and emergent nematic order
inferred← citeshttps://doi.org/10.1016/j.crmicr.2021.100062openalex-snapshot
Tools and challenges to exploit microbial communities in agriculture
inferred← citeshttps://doi.org/10.1016/j.csbj.2020.05.023openalex-snapshot
Deep learning predicts microbial interactions from self-organized spatiotemporal patterns
inferred← citeshttps://doi.org/10.1016/j.cub.2020.06.103openalex-snapshot
The Central Role of Interbacterial Antagonism in Bacterial Life
inferred← citeshttps://doi.org/10.1016/j.cub.2026.05.044openalex-snapshot
Phosphorus stress and spatial confinement lower the quorum-sensing activation threshold for phenazine production in Pseudomonas synxantha
inferred← citeshttps://doi.org/10.1016/j.ecoenv.2023.115474openalex-snapshot
Europium(III) as luminescence probe for interactions of a sulfate-reducing microorganism with potentially toxic metals
inferred← citeshttps://doi.org/10.1016/j.ecoenv.2025.118940openalex-snapshot
¹ ³C labeling unveils soil and microbial changes in continuously cropped Pogostemon cablin
inferred← citeshttps://doi.org/10.1016/j.envint.2021.106438openalex-snapshot
A global overview of the trophic structure within microbiomes across ecosystems
inferred← citeshttps://doi.org/10.1016/j.envres.2022.114369openalex-snapshot
Recent advances in metagenomic analysis of different ecological niches for enhanced biodegradation of recalcitrant lignocellulosic biomass
inferred← citeshttps://doi.org/10.1016/j.funeco.2020.100948openalex-snapshot
Do shared traits create the same fates? Examining the link between morphological type and the biogeography of fungal and bacterial communities
inferred← citeshttps://doi.org/10.1016/j.gecco.2018.e00458openalex-snapshot
In situ real-time quantification of microbial communities: Applications to cold and dry volcanic habitats
inferred← citeshttps://doi.org/10.1016/j.geoderma.2018.07.031openalex-snapshot
Combination of techniques to quantify the distribution of bacteria in their soil microhabitats at different spatial scales
inferred← citeshttps://doi.org/10.1016/j.geoderma.2022.116117openalex-snapshot
Compost amendment maintains soil structure and carbon storage by increasing available carbon and microbial biomass in agricultural soil – A six-year field study
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2020.123625openalex-snapshot
Distribution and speciation of Sb and toxic metal(loid)s near an antimony refinery and their effects on indigenous microorganisms
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2024.134958openalex-snapshot
Nano- and microplastics drive the dynamic equilibrium of amoeba-associated bacteria and antibiotic resistance genes
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2026.142269openalex-snapshot
PE microplastics and sulfadiazine drive cross-domain microbial restructuring and antibiotic resistance gene dynamics in biofilms
inferred← citeshttps://doi.org/10.1016/j.jprot.2018.11.011openalex-snapshot
Using proteins to study how microbes contribute to soil ecosystem services: The current state and future perspectives of soil metaproteomics
inferred← citeshttps://doi.org/10.1016/j.jtbi.2018.12.032openalex-snapshot
An ancestral process with selection in an ecological community
inferred← citeshttps://doi.org/10.1016/j.mib.2016.03.015openalex-snapshot
Microbial interactions and community assembly at microscales
inferred← citeshttps://doi.org/10.1016/j.microb.2024.100177openalex-snapshot
Metagenomics for accelerated discovery of antimicrobial compounds: A review focused on bovine mastitis
inferred← citeshttps://doi.org/10.1016/j.onehlt.2022.100385openalex-snapshot
The host-specific resistome in environmental feces of Eurasian otters (Lutra lutra) and leopard cats (Prionailurus bengalensis) revealed by metagenomic sequencing
inferred← citeshttps://doi.org/10.1016/j.pbi.2021.102025openalex-snapshot
Designing a home for beneficial plant microbiomes
inferred← citeshttps://doi.org/10.1016/j.plantsci.2025.112496openalex-snapshot
Iron sensing, signalling and acquisition by microbes and plants under environmental stress: Use of iron-solubilizing bacteria in crop biofortification for sustainable agriculture
inferred← citeshttps://doi.org/10.1016/j.renene.2019.12.062openalex-snapshot
Assessment of fungal and thermo-alkaline post-treatments of solid digestate in a recirculation scheme to increase flexibility in feedstocks supply management of biogas plants
inferred← citeshttps://doi.org/10.1016/j.resmic.2023.104149openalex-snapshot
Biofilms communities in the soil: characteristic and interactions using mathematical model
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2018.03.201openalex-snapshot
Use of an improved high-throughput absolute abundance quantification method to characterize soil bacterial community and dynamics
inferred← citeshttps://doi.org/10.1016/j.soilbio.2015.01.025openalex-snapshot
Microbial hotspots and hot moments in soil: Concept & review
inferred← citeshttps://doi.org/10.1016/j.soilbio.2015.07.025openalex-snapshot
Mutabilis in mutabili: Spatiotemporal dynamics of a truffle colony in soil
inferred← citeshttps://doi.org/10.1016/j.soilbio.2015.08.003openalex-snapshot
Measuring biogeochemical heterogeneity at the micro scale in soils and sediments
inferred← citeshttps://doi.org/10.1016/j.soilbio.2016.01.006openalex-snapshot
Modeling coupled enzymatic and solute transport controls on decomposition in drying soils
inferred← citeshttps://doi.org/10.1016/j.soilbio.2020.107975openalex-snapshot
Spatial and temporal evolution of detritusphere hotspots at different soil moistures
inferred← citeshttps://doi.org/10.1016/j.soilbio.2021.108218openalex-snapshot
Deciphering sample size effect on microbial biogeographic patterns and community assembly processes at centimeter scale
inferred← citeshttps://doi.org/10.1016/j.soilbio.2021.108423openalex-snapshot
Competition within low-density bacterial populations as an unexpected factor regulating carbon decomposition in bulk soil
inferred← citeshttps://doi.org/10.1016/j.soilbio.2022.108604openalex-snapshot
From diversity to complexity: Microbial networks in soils
inferred← citeshttps://doi.org/10.1016/j.soilbio.2022.108807openalex-snapshot
Opportunities and limits in imaging microorganisms and their activities in soil microhabitats
inferred← citeshttps://doi.org/10.1016/j.soilbio.2022.108902openalex-snapshot
Soil sample sizes for DNA extraction substantially affect the examination of microbial diversity and co-occurrence patterns but not abundance
inferred← citeshttps://doi.org/10.1016/j.soilbio.2023.109192openalex-snapshot
Seepage-mediated export of bacteria from soil is taxon-specific and driven by seasonal infiltration regimes
inferred← citeshttps://doi.org/10.1016/j.soilbio.2024.109509openalex-snapshot
Spatial substrate heterogeneity limits microbial growth as revealed by the joint experimental quantification and modeling of carbon and heat fluxes
inferred← citeshttps://doi.org/10.1016/j.soilbio.2024.109610openalex-snapshot
Very Fine Roots Differ Among Switchgrass (Panicum Virgatum L.) Cultivars and Differentially Affect Soil Pores and Carbon Processes
inferred← citeshttps://doi.org/10.1016/j.soilbio.2025.109996openalex-snapshot
Some new grand questions in soil biology and biochemistry
inferred← citeshttps://doi.org/10.1016/j.soilbio.2026.110211openalex-snapshot
Eco-evolutionary controls of microbial extracellular enzyme production in soils
inferred← citeshttps://doi.org/10.1016/j.trac.2018.12.024openalex-snapshot
Recent advances in microfluidic devices for bacteria and fungus research
inferred← citeshttps://doi.org/10.1016/j.virol.2024.110007openalex-snapshot
Australian terrestrial environments harbour extensive RNA virus diversity
inferred← citeshttps://doi.org/10.1016/j.watres.2017.07.004openalex-snapshot
The potential implications of reclaimed wastewater reuse for irrigation on the agricultural environment: The knowns and unknowns of the fate of antibiotics and antibiotic resistant bacteria and resistance genes – A review
inferred← citeshttps://doi.org/10.1016/j.watres.2022.119126openalex-snapshot
A process-based model for describing redox kinetics of Cr(VI) in natural sediments containing variable reactive Fe(II) species
inferred← citeshttps://doi.org/10.1021/acs.est.2c02207openalex-snapshot
Reactive Nitrogen Hotspots Related to Microscale Heterogeneity in Biological Soil Crusts
inferred← citeshttps://doi.org/10.1021/acs.est.2c03397openalex-snapshot
Spatial Control of Microbial Pesticide Degradation in Soil: A Model-Based Scenario Analysis
inferred← citeshttps://doi.org/10.1021/acs.est.8b05245openalex-snapshot
Correlative Imaging Reveals Holistic View of Soil Microenvironments
inferred← citeshttps://doi.org/10.1021/acs.langmuir.6c00046openalex-snapshot
Ultrasensitive Visual Detection of Chitin Degradation via Surface Pitting on a Nanofibrous N -Acetylchitosan Hydrogel
inferred← citeshttps://doi.org/10.1029/2018jg004779openalex-snapshot
A Theory of Effective Microbial Substrate Affinity Parameters in Variably Saturated Soils and an Example Application to Aerobic Soil Heterotrophic Respiration
inferred← citeshttps://doi.org/10.1029/2023jg007674openalex-snapshot
Feasibility of Formulating Ecosystem Biogeochemical Models From Established Physical Rules
inferred← citeshttps://doi.org/10.1029/2023jg007964openalex-snapshot
Bridging 20 Years of Soil Organic Matter Frameworks: Empirical Support, Model Representation, and Next Steps
inferred← citeshttps://doi.org/10.1038/nature14485openalex-snapshot
Counteraction of antibiotic production and degradation stabilizes microbial communities
inferred← citeshttps://doi.org/10.1038/nrmicro3468openalex-snapshot
Dispersing misconceptions and identifying opportunities for the use of 'omics' in soil microbial ecology
inferred← citeshttps://doi.org/10.1038/s41396-019-0469-xopenalex-snapshot
Microbe-driven chemical ecology: past, present and future
inferred← citeshttps://doi.org/10.1038/s41396-022-01337-1openalex-snapshot
Plant-associated Bacillus mobilizes its secondary metabolites upon perception of the siderophore pyochelin produced by a Pseudomonas competitor
inferred← citeshttps://doi.org/10.1038/s41467-019-11956-6openalex-snapshot
Microscale pH variations during drying of soils and desert biocrusts affect HONO and NH3 emissions
inferred← citeshttps://doi.org/10.1038/s41467-020-19792-9openalex-snapshot
Organo–organic and organo–mineral interfaces in soil at the nanometer scale
inferred← citeshttps://doi.org/10.1038/s41467-024-46933-1openalex-snapshot
Niche availability and competitive loss by facilitation control proliferation of bacterial strains intended for soil microbiome interventions
inferred← citeshttps://doi.org/10.1038/s41467-024-51944-zopenalex-snapshot
Fragmented micro-growth habitats present opportunities for alternative competitive outcomes
inferred← citeshttps://doi.org/10.1038/s41522-025-00666-1openalex-snapshot
Disentangling the feedback loops driving spatial patterning in microbial communities
inferred← citeshttps://doi.org/10.1038/s41559-018-0535-1openalex-snapshot
Ecological suicide in microbes
inferred← citeshttps://doi.org/10.1038/s41559-025-02967-2openalex-snapshot
Bacterial necromass recycling promotes diversity maintenance in bacterial communities via resource partitioning
inferred← citeshttps://doi.org/10.1038/s41579-019-0158-9openalex-snapshot
Bacteria and archaea on Earth and their abundance in biofilms
inferred← citeshttps://doi.org/10.1038/s41579-022-00695-zopenalex-snapshot
Life and death in the soil microbiome: how ecological processes influence biogeochemistry
inferred← citeshttps://doi.org/10.1038/s41579-022-00709-wopenalex-snapshot
The ecological roles of bacterial chemotaxis
inferred← citeshttps://doi.org/10.1038/s41579-023-01007-9openalex-snapshot
Synthetic microbiology in sustainability applications
inferred← citeshttps://doi.org/10.1038/s41579-026-01307-wopenalex-snapshot
Restoring soil and sediment microbiomes in the Anthropocene
inferred← citeshttps://doi.org/10.1038/s41586-025-09316-0openalex-snapshot
A diverse and distinct microbiome inside living trees
inferred← citeshttps://doi.org/10.1038/s41589-023-01462-8openalex-snapshot
Volatile methyl jasmonate from roots triggers host-beneficial soil microbiome biofilms
inferred← citeshttps://doi.org/10.1038/s41598-020-67631-0openalex-snapshot
Soil as an extended composite phenotype of the microbial metagenome
inferred← citeshttps://doi.org/10.1038/s41598-021-83773-1openalex-snapshot
Modelling the spatiotemporal complexity of interactions between pathogenic bacteria and a phage with a temperature-dependent life cycle switch
inferred← citeshttps://doi.org/10.1038/s41598-022-21365-3openalex-snapshot
Enhanced terrestrial Fe(II) mobilization identified through a novel mechanism of microbially driven cave formation in Fe(III)-rich rocks
inferred← citeshttps://doi.org/10.1038/s42003-020-01198-4openalex-snapshot
A multi-scale eco-evolutionary model of cooperation reveals how microbial adaptation influences soil decomposition
inferred← citeshttps://doi.org/10.1038/s42003-021-02379-5openalex-snapshot
Microfluidic chips provide visual access to in situ soil ecology
inferred← citeshttps://doi.org/10.1038/s42003-023-04703-7openalex-snapshot
Aqueous habitats and carbon inputs shape the microscale geography and interaction ranges of soil bacteria
inferred← citeshttps://doi.org/10.1038/s43017-021-00162-yopenalex-snapshot
Dynamic interactions at the mineral–organic matter interface
inferred← citeshttps://doi.org/10.1038/s43017-022-00366-wopenalex-snapshot
Soil structure and microbiome functions in agroecosystems
inferred← citeshttps://doi.org/10.1038/s43586-024-00376-6openalex-snapshot
Analysis of metagenomic data
inferred← citeshttps://doi.org/10.1038/srep36390openalex-snapshot
Mycelia as a focal point for horizontal gene transfer among soil bacteria
inferred← citeshttps://doi.org/10.1038/srep43726openalex-snapshot
Cooperation in carbon source degradation shapes spatial self-organization of microbial consortia on hydrated surfaces
inferred← citeshttps://doi.org/10.1073/pnas.1808274115openalex-snapshot
Cell-to-cell bacterial interactions promoted by drier conditions on soil surfaces
inferred← citeshttps://doi.org/10.1073/pnas.1908493116openalex-snapshot
Microbial communities in the tropical air ecosystem follow a precise diel cycle
inferred← citeshttps://doi.org/10.1073/pnas.2020956119openalex-snapshot
Higher-order effects, continuous species interactions, and trait evolution shape microbial spatial dynamics
inferred← citeshttps://doi.org/10.1073/pnas.2109176118openalex-snapshot
Plant–environment microscopy tracks interactions of Bacillus subtilis with plant roots across the entire rhizosphere
inferred← citeshttps://doi.org/10.1073/pnas.2120821119openalex-snapshot
Population genetics in microchannels
inferred← citeshttps://doi.org/10.1073/pnas.2409510121openalex-snapshot
The carnivorous plant Genlisea harnesses active particle dynamics to prey on microfauna
inferred← citeshttps://doi.org/10.1079/978178924881.0011openalex-snapshot
Nematode Use for Testing Theoretical Models of Behavioral Ecology
inferred← citeshttps://doi.org/10.1079/9781789248814.0011openalex-snapshot
Nematode Use for Testing Theoretical Models of Behavioral Ecology
inferred← citeshttps://doi.org/10.1079/cabireviews202217002openalex-snapshot
Harnessing soil bacteria and their benefits for sustainable agriculture with changing climate
inferred← citeshttps://doi.org/10.1088/1755-1315/974/1/012046openalex-snapshot
Possibility to develop biological control agents for plant diseases on ramie plantation
inferred← citeshttps://doi.org/10.1089/ast.2021.0112openalex-snapshot
Chapter 10: Planetary Protection—History, Science, and the Future
inferred← citeshttps://doi.org/10.1091/mbc.e24-10-0461openalex-snapshot
Behind the scenes of cellular organization: Quantifying spatial phenotypes of puncta structures with statistical models including random fields
inferred← citeshttps://doi.org/10.1093/dnares/dsaf032openalex-snapshot
Strain-level dissection of complex rhizoplane and soil bacterial communities using single-cell genomics and metagenomics
inferred← citeshttps://doi.org/10.1093/femsec/fiab091openalex-snapshot
Micro on a macroscale: relating microbial-scale soil processes to global ecosystem function
inferred← citeshttps://doi.org/10.1093/femsec/fiac089openalex-snapshot
Disturbance by soil mixing decreases microbial richness and supports homogenizing community assembly processes
inferred← citeshttps://doi.org/10.1093/femsec/fiad139openalex-snapshot
Phylogenetically related soil actinomycetes distinguish isolation sites by their metabolic activities
inferred← citeshttps://doi.org/10.1093/femsec/fiu034openalex-snapshot
Spatial scales of interactions among bacteria and between bacteria and the leaf surface
inferred← citeshttps://doi.org/10.1093/femsec/fiy102openalex-snapshot
Adaptations to marine versus terrestrial low temperature environments as revealed by comparative genomic analyses of the genus Psychrobacter
inferred← citeshttps://doi.org/10.1093/femsec/fiz058openalex-snapshot
Fine-scale diversity patterns in belowground microbial communities are consistent across kingdoms
inferred← citeshttps://doi.org/10.1093/femsml/uqae020openalex-snapshot
Inferring bacterial interspecific interactions from microcolony growth expansion
inferred← citeshttps://doi.org/10.1093/femsre/fuaf067openalex-snapshot
Spatial structure: shaping the ecology and evolution of microbial communities
inferred← citeshttps://doi.org/10.1093/femsre/fux039openalex-snapshot
Biophysical processes supporting the diversity of microbial life in soil
inferred← citeshttps://doi.org/10.1093/ismeco/ycag189openalex-snapshot
Spatial and depth structuring predominate over temporal variation in Mediterranean climate grassland soil viral communities
inferred← citeshttps://doi.org/10.1093/ismejo/wrad038openalex-snapshot
Interspecific competition prevents the proliferation of social cheaters in an unstructured environment
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