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Phylogenetics of Tribe Collabieae (Orchidaceae, Epidendroideae) Based on Four Chloroplast Genes with Morphological Appraisal

https://doi.org/10.1371/journal.pone.0087625
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/tax.611003openalex-snapshot
Phylogenetic placement of the enigmatic orchid genera Thaia and Tangtsinia : Evidence from molecular and morphological characters
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Molecular systematics and evolutionary trends and relationships in the genus Jumellea (Orchidaceae): Implications for its species limits
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Phylogenetic relationships within Orchidaceae based on a low-copy nuclear coding gene, Xdh: Congruence with organellar and nuclear ribosomal DNA results
inferredcites →https://doi.org/10.1016/j.ympev.2013.01.008openalex-snapshot
Molecular phylogenetics of the species-rich genus Habenaria (Orchidaceae) in the New World based on nuclear and plastid DNA sequences
inferredcites →https://doi.org/10.1043/0363-6445-26.3.670openalex-snapshot
Phylogenetics of Arethuseae (Orchidaceae) based on plastid matK and rbcL sequences
inferredcites →https://doi.org/10.1093/aob/mcs083openalex-snapshot
Phylogenetics of tribe Orchideae (Orchidaceae: Orchidoideae) based on combined DNA matrices: inferences regarding timing of diversification and evolution of pollination syndromes
inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot
MrBayes 3: Bayesian phylogenetic inference under mixed models
inferredcites →https://doi.org/10.1093/nar/25.24.4876openalex-snapshot
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
inferredcites →https://doi.org/10.1093/oso/9780198507123.001.0001openalex-snapshot
Genera Orchidacearum
inferredcites →https://doi.org/10.1109/gce.2010.5676129openalex-snapshot
Creating the CIPRES Science Gateway for inference of large phylogenetic trees
inferredcites →https://doi.org/10.1111/j.1756-1051.1992.tb01849.xopenalex-snapshot
Orchid Monographs vol. 6. Vogel, E. F. de 1992. Revisions in Coelogynineae (Orchidaceae) iv, Coelogyne Section Tomentosae. ‐ Turner, H. 1992. A Revision of the Orchid Genera Ania, Hancockia, Mischobulbum and Tainia.
inferredcites →https://doi.org/10.1179/2042349712y.0000000013openalex-snapshot
Contrast in levels of morphological versus molecular divergence between closely related Eurasian species ofPlatanthera(Orchidaceae) suggests recent evolution with a strong allometric component
inferredcites →https://doi.org/10.1371/journal.pone.0052050openalex-snapshot
Monophyly or Paraphyly– The Taxonomy of Holcoglossum (Aeridinae: Orchidaceae)
inferredcites →https://doi.org/10.14601/phytopathol_mediterr-14998u1.29openalex-snapshot
BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT
inferredcites →https://doi.org/10.1600/036364410792495944openalex-snapshot
Molecular Phylogenetics of Galeandra (Orchidaceae: Catasetinae) based on Plastid and Nuclear DNA Sequences
inferredcites →https://doi.org/10.2307/1219717openalex-snapshot
The Orchids: Natural History and Classification
inferredcites →https://doi.org/10.2307/2394615openalex-snapshot
Classification and Phylogeny in the Orchidacea
inferredcites →https://doi.org/10.2307/2656938openalex-snapshot
A phylogenetic analysis of the Orchidaceae: evidence from rbcL nucleotide sequences
inferredcites →https://doi.org/10.3732/ajb.91.1.149openalex-snapshot
An expanded plastid DNA phylogeny of Orchidaceae and analysis of jackknife branch support strategy
inferredcites →https://doi.org/10.3732/ajb.92.4.613openalex-snapshot
An overview of the phylogenetic relationships within Epidendroideae inferred from multiple DNA regions and recircumscription of Epidendreae and Arethuseae (Orchidaceae)
inferredcites →https://doi.org/10.5860/choice.31-2679openalex-snapshot
Phylogeny and classification of the orchid family
inferredcites →https://doi.org/10.5962/bhl.title.166408openalex-snapshot
Entwurf einer Naturlichen Anordnung der Orchideen
inferredcites →https://doi.org/10.5962/bhl.title.46623openalex-snapshot
Die Orchideen : ihre Beschreibung, Kultur und Züchtung : Handbuch für Orchideenliebhaber, Züchter und Botaniker
inferredcites →https://doi.org/10.5962/p.295186openalex-snapshot
On the Origin of the Orchidaceae

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Calanthe taibaishanensis, A New Orchid Species from China: Evidence from Morphological and Molecular Analyses
inferred← citeshttps://doi.org/10.11646/phytotaxa.481.1.1zenodo-depositor-declared
Annotated List of Orchidaceae for Myanmar
inferred← citeshttps://doi.org/10.11646/phytotaxa.518.2.5zenodo-depositor-declared
Calanthe × yarlungzangboensis, a new natural hybrid in genus Calanthe (Orchidaceae) from China
inferred← citeshttps://doi.org/10.5252/adansonia2023v45a18zenodo-depositor-declared
Un synopsis du genre Calanthe R.Br. (Collabieae, Orchidaceae) en Nouvelle-Calédonie, avec la caractérisation de deux nothoespèces
inferred← citeshttps://doi.org/10.1002/ece3.73301openalex-snapshot
Phylogeny and Biogeography of Calanthe Shed New Light on Alpine Origin and Radiation History of Calanthe Alliance
inferred← citeshttps://doi.org/10.1007/978-981-99-4853-6_14openalex-snapshot
Plants of Tribe Epidendreae and Collabieae
inferred← citeshttps://doi.org/10.1007/s00572-026-01311-1openalex-snapshot
Integrating stable isotope and fungal association evidence for nutrient acquisition in the rare orchid, Risleya atropurpurea
inferred← citeshttps://doi.org/10.1007/s13237-026-00659-1openalex-snapshot
Complete chloroplast genome of the endangered Himalayan orchid Crepidium acuminatum: insights into taxonomy, DNA barcoding, and phylogeny
inferred← citeshttps://doi.org/10.1016/j.gene.2023.147760openalex-snapshot
The complete chloroplast genome sequences of four Liparis species (Orchidaceae) and phylogenetic implications
inferred← citeshttps://doi.org/10.1016/j.pld.2021.07.004openalex-snapshot
Orchid diversity in China: Recent discoveries
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.06.041openalex-snapshot
From tree tops to the ground: Reversals to terrestrial habit in Galeandra orchids (Epidendroideae: Catasetinae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.106540openalex-snapshot
Phylogenomics of Orchidaceae based on plastid and mitochondrial genomes
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107860openalex-snapshot
Species richness disparity in tropical terrestrial herbaceous floras: Evolutionary insight from Collabieae (Orchidaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108084openalex-snapshot
Phylogenomics and biogeographical diversification of Collabieae (Orchidaceae) and its implication in the reconstruction of the dynamic history of Asian evergreen broadleaved forests
inferred← citeshttps://doi.org/10.1080/23802359.2021.1904801openalex-snapshot
The plastome of Phaius hainanensis (Orchidaceae): an endangered species endemic to Hainan province, China
inferred← citeshttps://doi.org/10.1080/23802359.2023.2296920openalex-snapshot
The complete chloroplast genome of Chrysoglossum ornatum (Epidendroideae, Orchidaceae) and its phylogenetic analysis
inferred← citeshttps://doi.org/10.1093/aob/mcad145openalex-snapshot
Gains and losses of the epiphytic lifestyle in epidendroid orchids: review and new analyses of succulence traits
inferred← citeshttps://doi.org/10.1093/aob/mcae202openalex-snapshot
Orchid phylogenetics and evolution: history, current status and prospects
inferred← citeshttps://doi.org/10.1093/botlinnean/boae028openalex-snapshot
Plastome analysis elucidates the phylogenetic placement of the mycoheterotrophic genus Yoania (Orchidaceae) and its plastomic degeneration during the evolution of mycoheterotrophy
inferred← citeshttps://doi.org/10.1093/botlinnean/box084openalex-snapshot
Prioritizing the orchids of a biodiversity hotspot for conservation based on phylogenetic history and extinction risk
inferred← citeshttps://doi.org/10.1101/2023.09.10.557090openalex-snapshot
Complete Chloroplast Genome of a Montane Plant Spathoglottis aurea Lindl.: Comparative Analyses and Phylogenetic Relationships among members of Tribe Collabieae
inferred← citeshttps://doi.org/10.1111/boj.12234openalex-snapshot
An updated classification of Orchidaceae
inferred← citeshttps://doi.org/10.1111/jse.12187openalex-snapshot
A molecular phylogeny of Chinese orchids
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Do exchangeable hydrogens affect the evaluation of partial mycoheterotrophy in orchids? Insights from δ2H analysis in bulk, α‐cellulose, and cellulose nitrate samples
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Comparative and phylogenetic analyses of six Kenya Polystachya (Orchidaceae) species based on the complete chloroplast genome sequences
inferred← citeshttps://doi.org/10.1186/s12870-022-03736-0openalex-snapshot
Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis
inferred← citeshttps://doi.org/10.1186/s12870-024-06040-1openalex-snapshot
Complete chloroplast genome of eight Phaius (Orchidaceae) species from China: comparative analysis and phylogenetic relationship
inferred← citeshttps://doi.org/10.12705/652.2openalex-snapshot
Life form evolution in epidendroid orchids: Ecological consequences of the shift from epiphytism to terrestrial habit in Hexalectris
inferred← citeshttps://doi.org/10.12705/652.3openalex-snapshot
Phylogenetic placement and generic re‐circumscriptions of the multilocular genera Arenifera , Octopoma and Schlechteranthus (Aizoaceae: Ruschieae): Evidence from anatomical, morphological and plastid DNA data
inferred← citeshttps://doi.org/10.1371/journal.pone.0098721openalex-snapshot
Correction: Phylogenetics of Tribe Collabieae (Orchidaceae, Epidendroideae) Based on Four Chloroplast Genes with Morphological Appraisal
inferred← citeshttps://doi.org/10.1371/journal.pone.0103129openalex-snapshot
Re-Establishment of the Genus Ania Lindl. (Orchidaceae)
inferred← citeshttps://doi.org/10.1371/journal.pone.0123382openalex-snapshot
A New Myco-Heterotrophic Genus, Yunorchis, and the Molecular Phylogenetic Relationships of the Tribe Calypsoeae (Epidendroideae, Orchidaceae) Inferred from Plastid and Nuclear DNA Sequences
inferred← citeshttps://doi.org/10.1371/journal.pone.0291888openalex-snapshot
Complete chloroplast genome of a montane plant Spathoglottis aurea Lindl.: Comparative analyses and phylogenetic relationships among members of tribe collabieae
inferred← citeshttps://doi.org/10.17520/biods.2015052openalex-snapshot
Families and genera of Chinese angiosperms: a synoptic classification based on APG III
inferred← citeshttps://doi.org/10.17660/actahortic.2017.1167.46openalex-snapshot
Genetic diversity of some species in the genus Calanthe analyzed by RAPD markers
inferred← citeshttps://doi.org/10.20531/tfb.2019.47.2.12openalex-snapshot
A review of the Calanthe group (Orchidaceae) in Myanmar
inferred← citeshttps://doi.org/10.26492/gbs75(1).2023-10openalex-snapshot
Studies in Oberonia 11: The genus Hippeophyllum reduced to Oberonia, with ten new synonyms of Oberonia scortechinii (Orchidaceae: Malaxideae)
inferred← citeshttps://doi.org/10.33545/27080013.2020.v1.i1a.4openalex-snapshot
Phylogenetic and evolutionary revision of some pheasants of northern Pakistan
inferred← citeshttps://doi.org/10.3372/wi.46.46105openalex-snapshot
Which changes are needed to render all genera of the German flora monophyletic?
inferred← citeshttps://doi.org/10.3390/f13122079openalex-snapshot
Molecular Phylogenetics of the Orchid Genus Spathoglottis (Orchidaceae: Collabieae) in Peninsular Malaysia and Borneo
inferred← citeshttps://doi.org/10.6084/m9.figshare.20423869openalex-snapshot
Additional file 1 of Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis
inferred← citeshttps://doi.org/10.6084/m9.figshare.20423875openalex-snapshot
Additional file 3 of Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis
inferred← citeshttps://doi.org/10.6084/m9.figshare.20423878openalex-snapshot
Additional file 4 of Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis
inferred← citeshttps://doi.org/10.6084/m9.figshare.20423887openalex-snapshot
Additional file 7 of Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis
inferred← citeshttps://doi.org/10.6084/m9.figshare.20423893openalex-snapshot
Additional file 9 of Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis
inferred← citeshttps://doi.org/10.7287/peerj.10051v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Plastome structure and adaptive evolution of Calanthe s.l. species (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.10051v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Plastome structure and adaptive evolution of Calanthe s.l. species (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.10051v0.1/reviews/3openalex-snapshot
Peer Review #3 of "Plastome structure and adaptive evolution of Calanthe s.l. species (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.10051v0.2/reviews/2openalex-snapshot
Peer Review #2 of "Plastome structure and adaptive evolution of Calanthe s.l. species (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.10051v0.2/reviews/3openalex-snapshot
Peer Review #3 of "Plastome structure and adaptive evolution of Calanthe s.l. species (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.13106v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Integration of the metabolome and transcriptome reveals indigo biosynthesis in Phaius flavus flowers under freezing treatment (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.13106v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Integration of the metabolome and transcriptome reveals indigo biosynthesis in Phaius flavus flowers under freezing treatment (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.13106v0.2/reviews/1openalex-snapshot
Peer Review #1 of "Integration of the metabolome and transcriptome reveals indigo biosynthesis in Phaius flavus flowers under freezing treatment (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.13106v0.2/reviews/2openalex-snapshot
Peer Review #2 of "Integration of the metabolome and transcriptome reveals indigo biosynthesis in Phaius flavus flowers under freezing treatment (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.13106v0.3/reviews/2openalex-snapshot
Peer Review #2 of "Integration of the metabolome and transcriptome reveals indigo biosynthesis in Phaius flavus flowers under freezing treatment (v0.3)"
inferred← citeshttps://doi.org/10.7717/peerj.10051openalex-snapshot
Plastome structure and adaptive evolution of Calanthe s.l. species
inferred← citeshttps://doi.org/10.7717/peerj.13106openalex-snapshot
Integration of the metabolome and transcriptome reveals indigo biosynthesis in Phaius flavus flowers under freezing treatment
inferred← citeshttps://doi.org/10.9734/arrb/2019/v34i130142openalex-snapshot
Bioinformatics Analysis on DNA Barcode Sequences for Species Identification: A Review
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