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De Novo Assembly of Expressed Transcripts and Global Transcriptomic Analysis from Seedlings of the Paper Mulberry (Broussonetia kazinoki x Broussonetia papyifera)

https://doi.org/10.1371/journal.pone.0097487
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Role of Phytochelatins in Heavy Metal Stress and Detoxification Mechanisms in Plants
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Screening of Plant Species for Phytoremediation of Uranium, Thorium, Barium, Nickel, Strontium and Lead Contaminated Soils from a Uranium Mill Tailings Repository in South China
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Broussonetia papyrifera (paper mulberry): its growth, yield and potential as a fallow crop in slash-and-burn upland rice system of northern Laos
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Equilibrium and Kinetic Studies on Biosorption of Heavy Metals by Leaf Powder of Paper Mulberry (Broussonetia papyrifera)
inferredcites →https://doi.org/10.1016/j.foodchem.2011.11.093openalex-snapshot
Anticholinesterase potential of flavonols from paper mulberry (Broussonetia papyrifera) and their kinetic studies
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GsSRK, a G-type lectin S-receptor-like serine/threonine protein kinase, is a positive regulator of plant tolerance to salt stress
inferredcites →https://doi.org/10.1016/j.phymed.2003.09.005openalex-snapshot
Antimicrobial and cytotoxic activity of 18 prenylated flavonoids isolated from medicinal plants: Morus alba L., Morus mongolica Schneider, Broussnetia papyrifera (L.) Vent, Sophora flavescens Ait and Echinosophora koreensis Nakai
inferredcites →https://doi.org/10.1016/j.phytol.2013.03.017openalex-snapshot
Prenylflavone derivatives from Broussonetia papyrifera, inhibit the growth of breast cancer cells in vitro and in vivo
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Transcriptional networks for lignin biosynthesis: more complex than we thought?
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Broussochalcone A, a potent antioxidant and effective suppressor of inducible nitric oxide synthase in lipopolysaccharide-activated macrophages11Abbreviations: NF-κB, nuclear factor-κB; NO, nitric oxide; NOS, nitric oxide synthase; iNOS, inducible NOS; BCA, broussochalcone A; BHT, butylated…
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Polyphenols from Broussonetia papyrifera Displaying Potent α-Glucosidase Inhibition
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Antityrosinase and Antioxidant Effects of ent-Kaurane Diterpenes from Leaves of Broussonetia papyrifera
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Full-length transcriptome assembly from RNA-Seq data without a reference genome
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Cellulose Synthases and Synthesis in Arabidopsis
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Tissue-Specific Transcriptome Analysis Reveals Cell Wall Metabolism, Flavonol Biosynthesis and Defense Responses are Activated in the Endosperm of Germinating Arabidopsis thaliana Seeds
inferredcites →https://doi.org/10.1094/pdis-03-11-0186openalex-snapshot
First Report of Black Spot Caused by Colletotrichum gloeosporioides on Paper Mulberry in China
inferredcites →https://doi.org/10.1094/pdis-04-11-0276openalex-snapshot
First Report of a Leaf Spot on Basella alba Caused by a Bipolaris sp. in Florida
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Tissue- and Cell-Type Specific Transcriptome Profiling of Expanding Tomato Fruit Provides Insights into Metabolic and Regulatory Specialization and Cuticle Formation
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The impact of B roussonetia papyrifera ( L .) vent. on community characteristics in the forest and forest–savannah transition ecosystems of Ghana
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Research on plant abiotic stress responses in the post‐genome era: past, present and future
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Over-expression of F5H in COMT-deficient Arabidopsis leads to enrichment of an unusual lignin and disruption of pollen wall formation
inferredcites →https://doi.org/10.1111/j.1365-313x.2012.05093.xopenalex-snapshot
The genome of flax ( Linum usitatissimum ) assembled de novo from short shotgun sequence reads
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Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa
inferredcites →https://doi.org/10.1111/tpj.12100openalex-snapshot
The Arabidopsis leaf provascular cell transcriptome is enriched in genes with roles in vein patterning
inferredcites →https://doi.org/10.1126/science.1241602openalex-snapshot
Caffeoyl Shikimate Esterase (CSE) Is an Enzyme in the Lignin Biosynthetic Pathway in Arabidopsis
inferredcites →https://doi.org/10.1146/annurev-genet-102209-163508openalex-snapshot
The Genetics of Lignin Biosynthesis: Connecting Genotype to Phenotype
inferredcites →https://doi.org/10.1186/1471-2105-10-s11-s3openalex-snapshot
Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom
inferredcites →https://doi.org/10.1371/journal.pone.0021220openalex-snapshot
The First Insight into the Tissue Specific Taxus Transcriptome via Illumina Second Generation Sequencing
inferredcites →https://doi.org/10.1371/journal.pone.0032021openalex-snapshot
Chemical Composition and Antioxidant Activities of Broussonetia papyrifera Fruits
inferredcites →https://doi.org/10.1371/journal.pone.0048183openalex-snapshot
Enhanced Expression of Vacuolar H+-ATPase Subunit E in the Roots Is Associated with the Adaptation of Broussonetia papyrifera to Salt Stress
inferredcites →https://doi.org/10.1371/journal.pone.0060774openalex-snapshot
Identification and Analysis of Red Sea Mangrove (Avicennia marina) microRNAs by High-Throughput Sequencing and Their Association with Stress Responses
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inferredcites →https://doi.org/10.4062/biomolther.2012.081openalex-snapshot
Inhibition of Experimental Systemic Inflammation (Septic Inflammation) and Chronic Bronchitis by New Phytoformula BL Containing Broussonetia papyrifera and Lonicera japonica
inferredcites →https://doi.org/10.4236/ojf.2012.22010openalex-snapshot
Traffic Pollution Influences Leaf Biochemistries of Broussonetia papyrifera
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Identification of a male-specific amplified fragment length polymorphism (AFLP) marker in Broussonetia papyrifera

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Delimitation of the new tribe Parartocarpeae (Moraceae) is supported by a 333-gene phylogeny and resolves tribal level Moraceae taxonomy
inferred← citeshttps://doi.org/10.1007/s00253-019-09747-6openalex-snapshot
The effect of environment on the microbiome associated with the roots of a native woody plant under different climate types in China
inferred← citeshttps://doi.org/10.1007/s10265-022-01369-wopenalex-snapshot
Plastome phylogenomics of Allaeanthus, Broussonetia and Malaisia (Dorstenieae, Moraceae) and the origin of B. × kazinoki
inferred← citeshttps://doi.org/10.1007/s10658-015-0808-3openalex-snapshot
Molecular identification of ‘Candidatus phytoplasma asteris’ related strain (16SrΙ-B) associated with Broussonetia papyrifera in Nanjing, China
inferred← citeshttps://doi.org/10.1016/j.indcrop.2022.114771openalex-snapshot
High yield of fermentable sugar from paper mulberry woods using phosphoric acid plus hydrogen peroxide pretreatment: Multifactorial investigation and optimization
inferred← citeshttps://doi.org/10.1016/j.renene.2024.120478openalex-snapshot
Modulating three-dimensional porous carbon from paper mulberry juice by a hydrothermal process for a supercapacitor with excellent performance
inferred← citeshttps://doi.org/10.1021/acs.jproteome.6b01016openalex-snapshot
Phosphoproteomic Analysis of Paper Mulberry Reveals Phosphorylation Functions in Chilling Tolerance
inferred← citeshttps://doi.org/10.1038/s41598-018-24201-9openalex-snapshot
De novo assembly and analysis of the Artemisia argyi transcriptome and identification of genes involved in terpenoid biosynthesis
inferred← citeshttps://doi.org/10.1080/23802359.2017.1419088openalex-snapshot
The complete chloroplast genome of an economic and ecological plant, paper mulberry ( Broussonetia kazinoki × Broussonetia papyifera )
inferred← citeshttps://doi.org/10.1093/treephys/tpaa021openalex-snapshot
Distinct physiological and transcriptional responses of leaves of paper mulberry (Broussonetia kazinoki × B. papyrifera) under different nitrogen supply levels
inferred← citeshttps://doi.org/10.1093/treephys/tpac095openalex-snapshot
Comparative physiological and transcriptome analysis reveals the potential mechanism of selenium accumulation and tolerance to selenate toxicity of Broussonetia papyrifera
inferred← citeshttps://doi.org/10.1111/asj.13656openalex-snapshot
Study on the bacterial community structure and fermentation characteristics of fresh and ensiled paper mulberry
inferred← citeshttps://doi.org/10.11110/kjpt.2019.49.4.282openalex-snapshot
Test of the hybrid origin of Broussonetia × kazinoki (Moraceae) in Korea using molecular markers
inferred← citeshttps://doi.org/10.1186/s12864-015-2047-6openalex-snapshot
The cold responsive mechanism of the paper mulberry: decreased photosynthesis capacity and increased starch accumulation
inferred← citeshttps://doi.org/10.1186/s12870-014-0194-6openalex-snapshot
Global transcriptomics identification and analysis of transcriptional factors in different tissues of the paper mulberry
inferred← citeshttps://doi.org/10.1186/s12870-015-0489-2openalex-snapshot
Transcriptional regulation of the paper mulberry under cold stress as revealed by a comprehensive analysis of transcription factors
inferred← citeshttps://doi.org/10.1186/s40643-021-00490-3openalex-snapshot
Paper mulberry fruit juice: a novel biomass resource for bioethanol production
inferred← citeshttps://doi.org/10.1371/journal.pone.0108613openalex-snapshot
Correction: De Novo Assembly of Expressed Transcripts and Global Transcriptomic Analysis from Seedlings of the Paper Mulberry (Broussonetia kazinoki x Broussonetia papyifera)
inferred← citeshttps://doi.org/10.21203/rs.3.rs-87181/v1openalex-snapshot
The Chloroplast Genome Comparative Characteristic of Artificial Breeding Tree, a Case About Broussonetia Kazinoki × Broussonetia Papyifera
inferred← citeshttps://doi.org/10.32604/biocell.2022.016984openalex-snapshot
The chloroplast genome comparative characteristic of artificial breeding tree, a case about Broussonetia kazinoki �Broussonetia papyrifera
inferred← citeshttps://doi.org/10.3389/fmicb.2022.973500openalex-snapshot
Effects of epiphytic and exogenous lactic acid bacteria on fermentation quality and microbial community compositions of paper mulberry silage
inferred← citeshttps://doi.org/10.3389/fpls.2015.00217openalex-snapshot
De novo assembly of a genome-wide transcriptome map of Vicia faba (L.) for transfer cell research
inferred← citeshttps://doi.org/10.3389/fpls.2022.900030openalex-snapshot
Integrative Metabolome and Transcriptome Analysis of Flavonoid Biosynthesis Genes in Broussonetia papyrifera Leaves From the Perspective of Sex Differentiation
inferred← citeshttps://doi.org/10.3390/ijms23010127openalex-snapshot
iTRAQ-Based Quantitative Proteomics Analysis Reveals the Mechanism of Golden-Yellow Leaf Mutant in Hybrid Paper Mulberry
inferred← citeshttps://doi.org/10.3390/molecules26113449openalex-snapshot
Genome-Wide Analysis of the UGT Gene Family and Identification of Flavonoids in Broussonetia papyrifera
inferred← citeshttps://doi.org/10.6084/m9.figshare.18093197openalex-snapshot
Additional file 1 of Paper mulberry fruit juice: a novel biomass resource for bioethanol production
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