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Bioinformatic Analysis Reveals Genome Size Reduction and the Emergence of Tyrosine Phosphorylation Site in the Movement Protein of New World Bipartite Begomoviruses

https://doi.org/10.1371/journal.pone.0111957

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What this work says

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inferredcites →https://doi.org/10.1006/jmbi.2000.4042openalex-snapshot

T-coffee: a novel method for fast and accurate multiple sequence alignment 1 1Edited by J. Thornton

inferredcites →https://doi.org/10.1006/viro.2001.1194openalex-snapshot

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Tissue and cell tropism of Indian cassava mosaic virus (ICMV) and its AV2 (precoat) gene product

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Post-translational modifications of Abutilon mosaic virus movement protein (BC1) in fission yeast

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Phosphorylation of the TGBp1 movement protein of Potato virus X by a Nicotiana tabacum CK2-like activity

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Begomovirus Evolution and Disease Management

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inferredcites →https://doi.org/10.1093/molbev/msi105openalex-snapshot

Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection

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RefSeq: an update on mammalian reference sequences

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Classification and identification of geminiviruses using sequence comparisons

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Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses

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Molecular characterization of begomoviruses and DNA satellites from Vietnam: additional evidence that the New World geminiviruses were present in the Old World prior to continental separation

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Brazilian Begomovirus Populations Are Highly Recombinant, Rapidly Evolving, and Segregated Based on Geographical Location

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Characterization of a New World Monopartite Begomovirus Causing Leaf Curl Disease of Tomato in Ecuador and Peru Reveals a New Direction in Geminivirus Evolution

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Exploiting Chinks in the Plant's Armor: Evolution and Emergence of Geminiviruses

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Distinct evolutionary histories of the DNA-A and DNA-B components of bipartite begomoviruses

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Rapid Spread of a Recently Introduced Virus (Tomato Yellow Leaf Curl Virus) and Its Vector Bemisia tabaci (Hemiptera: Aleyrodidae) in Liaoning Province, China

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Analysis of synonymous codon usage and evolution of begomoviruses

What points at this work

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Genome wide molecular evolution analysis of begomoviruses reveals unique diversification pattern in coat protein gene of Old World and New World viruses

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Interspecies Recombination Has Driven the Macroevolution of Cassava Mosaic Begomoviruses

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How To Be a Successful Monopartite Begomovirus in a Bipartite-Dominated World: Emergence and Spread of Tomato Mottle Leaf Curl Virus in Brazil

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Biology and Interaction of the Natural Occurrence of Distinct Monopartite Begomoviruses Associated With Satellites in Capsicum annum From India

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RETRACTED: Emergence of Asian endemic begomoviruses as a pandemic threat

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Tomato Twisted Leaf Virus: A Novel Indigenous New World Monopartite Begomovirus Infecting Tomato in Venezuela

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Vector-Enabled Metagenomic (VEM) Surveys Using Whiteflies (Aleyrodidae) Reveal Novel Begomovirus Species in the New and OldWorlds

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Study of sida yellow spot virus, a begomovirus with a divergent coat protein

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