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Application of DNA Barcodes in Asian Tropical Trees – A Case Study from Xishuangbanna Nature Reserve, Southwest China

https://doi.org/10.1371/journal.pone.0129295

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Phenetic and DNA taxonomy; a comment on Waugh

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A proposal for a standardised protocol to barcode all land plants

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A stuttering start to plant DNA barcoding: microsatellites present a previously overlooked problem in non‐coding plastid regions

inferredcites →https://doi.org/10.1002/tax.592022openalex-snapshot

Plant DNA barcoding: A test using Macaronesian taxa of Tolpis (Asteraceae)

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Tropical Forest Census Plots

inferredcites →https://doi.org/10.1007/s11427-010-4009-1openalex-snapshot

Assessment of candidate plant DNA barcodes using the Rutaceae family

inferredcites →https://doi.org/10.1016/j.biocon.2007.12.015openalex-snapshot

DNA sequences identify invasive alien Cardamine at Lake Constance

inferredcites →https://doi.org/10.1016/j.jep.2010.04.026openalex-snapshot

Identification of medicinal plants in the family Fabaceae using a potential DNA barcode ITS2

inferredcites →https://doi.org/10.1038/ncomms2836openalex-snapshot

Taller plants have lower rates of molecular evolution

inferredcites →https://doi.org/10.1073/pnas.0503123102openalex-snapshot

Use of DNA barcodes to identify flowering plants

inferredcites →https://doi.org/10.1073/pnas.0709936105openalex-snapshot

DNA barcoding the floras of biodiversity hotspots

inferredcites →https://doi.org/10.1073/pnas.0905845106openalex-snapshot

A DNA barcode for land plants

inferredcites →https://doi.org/10.1073/pnas.0909820106openalex-snapshot

Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama

inferredcites →https://doi.org/10.1073/pnas.1104551108openalex-snapshot

Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants

inferredcites →https://doi.org/10.1080/10635150600969864openalex-snapshot

DNA Barcoding and Taxonomy in Diptera: A Tale of High Intraspecific Variability and Low Identification Success

inferredcites →https://doi.org/10.1080/10635150802429642openalex-snapshot

A Rapid Bootstrap Algorithm for the RAxML Web Servers

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot

MUSCLE: multiple sequence alignment with high accuracy and high throughput

inferredcites →https://doi.org/10.1093/sysbio/syr095openalex-snapshot

SATé-II: Very Fast and Accurate Simultaneous Estimation of Multiple Sequence Alignments and Phylogenetic Trees

inferredcites →https://doi.org/10.1098/rsbl.2003.0025openalex-snapshot

Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species

inferredcites →https://doi.org/10.1098/rspb.2007.1035openalex-snapshot

Limited performance of DNA barcoding in a diverse community of tropical butterflies

inferredcites →https://doi.org/10.1098/rstb.2005.1725openalex-snapshot

Defining operational taxonomic units using DNA barcode data

inferredcites →https://doi.org/10.1111/j.1095-8339.2008.00938.xopenalex-snapshot

Selection of candidate coding DNA barcoding regions for use on land plants

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Applying plant DNA barcodes for Rosaceae species identification

inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04831.xopenalex-snapshot

Forest refugia revisited: nSSRs and cpDNA sequences support historical isolation in a wide-spread African tree with high colonization capacity, Milicia excelsa (Moraceae)

inferredcites →https://doi.org/10.1111/j.1471-8286.2007.02002.xopenalex-snapshot

Testing candidate plant barcode regions in the Myristicaceae

inferredcites →https://doi.org/10.1111/j.1744-7429.2006.00147.xopenalex-snapshot

Geological History, Flora, and Vegetation of Xishuangbanna, Southern Yunnan, China1

inferredcites →https://doi.org/10.1111/j.1755-0998.2008.02439.xopenalex-snapshot

Selecting barcoding loci for plants: evaluation of seven candidate loci with species‐level sampling in three divergent groups of land plants

inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02547.xopenalex-snapshot

DNA barcoding discriminates the noxious invasive plant species, floating pennywort (Hydrocotyle ranunculoides L.f.), from non‐invasive relatives

inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02640.xopenalex-snapshot

Plant DNA barcodes and species resolution in sedges (Carex, Cyperaceae)

inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02641.xopenalex-snapshot

DNA barcoding discriminates a new cryptic grass species revealed in an ethnobotany study by the hill tribes of the Western Ghats in southern India

inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02642.xopenalex-snapshot

Testing plant barcoding in a sister species complex of pantropical Acacia (Mimosoideae, Fabaceae)

inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02652.xopenalex-snapshot

Are plant species inherently harder to discriminate than animal species using DNA barcoding markers?

inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02725.xopenalex-snapshot

A regional approach to plant DNA barcoding provides high species resolution of sedges (Carex and Kobresia, Cyperaceae) in the Canadian Arctic Archipelago

inferredcites →https://doi.org/10.1111/j.1755-0998.2010.02900.xopenalex-snapshot

Prospects of barcoding the Italian wild dendroflora: oaks reveal severe limitations to tracking species identity

inferredcites →https://doi.org/10.1111/j.1755-0998.2011.02984.xopenalex-snapshot

Evaluation of candidate DNA barcoding loci for economically important timber species of the mahogany family (Meliaceae)

inferredcites →https://doi.org/10.1111/j.1759-6831.2011.00136.xopenalex-snapshot

Testing four proposed barcoding markers for the identification of species within Ligustrum L. (Oleaceae)

inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00092.xopenalex-snapshot

Discriminating plant species in a local temperate flora using the rbcL + matK DNA barcode

inferredcites →https://doi.org/10.1126/science.1127609openalex-snapshot

Global Biodiversity Conservation Priorities

inferredcites →https://doi.org/10.1126/science.1163197openalex-snapshot

Rates of Molecular Evolution Are Linked to Life History in Flowering Plants

inferredcites →https://doi.org/10.1126/science.1176906openalex-snapshot

Barcoding of Plants and Fungi

inferredcites →https://doi.org/10.1126/science.239.4837.243openalex-snapshot

Tropical Ecological and Biocultural Restoration

inferredcites →https://doi.org/10.1186/1471-2229-10-205openalex-snapshot

DNA barcoding of the Lemnaceae, a family of aquatic monocots

inferredcites →https://doi.org/10.1371/journal.pone.0000508openalex-snapshot

A Two-Locus Global DNA Barcode for Land Plants: The Coding rbcL Gene Complements the Non-Coding trnH-psbA Spacer Region

inferredcites →https://doi.org/10.1371/journal.pone.0001154openalex-snapshot

DNA Barcoding in the Cycadales: Testing the Potential of Proposed Barcoding Markers for Species Identification of Cycads

inferredcites →https://doi.org/10.1371/journal.pone.0002802openalex-snapshot

Multiple Multilocus DNA Barcodes from the Plastid Genome Discriminate Plant Species Equally Well

inferredcites →https://doi.org/10.1371/journal.pone.0007483openalex-snapshot

Identification of Amazonian Trees with DNA Barcodes

inferredcites →https://doi.org/10.1371/journal.pone.0008613openalex-snapshot

Validation of the ITS2 Region as a Novel DNA Barcode for Identifying Medicinal Plant Species

inferredcites →https://doi.org/10.1371/journal.pone.0013674openalex-snapshot

Universal Plant DNA Barcode Loci May Not Work in Complex Groups: A Case Study with Indian Berberis Species

inferredcites →https://doi.org/10.1371/journal.pone.0015136openalex-snapshot

Molecular Species Identification with Rich Floristic Sampling: DNA Barcoding the Pteridophyte Flora of Japan

inferredcites →https://doi.org/10.1371/journal.pone.0015409openalex-snapshot

Advances in the Use of DNA Barcodes to Build a Community Phylogeny for Tropical Trees in a Puerto Rican Forest Dynamics Plot

inferredcites →https://doi.org/10.1371/journal.pone.0019254openalex-snapshot

Choosing and Using a Plant DNA Barcode

inferredcites →https://doi.org/10.1371/journal.pone.0026841openalex-snapshot

Plant DNA Barcodes Can Accurately Estimate Species Richness in Poorly Known Floras

inferredcites →https://doi.org/10.1371/journal.pone.0034089openalex-snapshot

Deciduous Trees and the Application of Universal DNA Barcodes: A Case Study on the Circumpolar Fraxinus

inferredcites →https://doi.org/10.1371/journal.pone.0037945openalex-snapshot

DNA Barcoding the Native Flowering Plants and Conifers of Wales

inferredcites →https://doi.org/10.1371/journal.pone.0043256openalex-snapshot

DNA Barcoding as an Effective Tool in Improving a Digital Plant Identification System: A Case Study for the Area of Mt. Valerio, Trieste (NE Italy)

inferredcites →https://doi.org/10.1371/journal.pone.0054921openalex-snapshot

How Effective Are DNA Barcodes in the Identification of African Rainforest Trees?

inferredcites →https://doi.org/10.1371/journal.pone.0057934openalex-snapshot

The Internal Transcribed Spacer (ITS) Region and trnhH-psbA Are Suitable Candidate Loci for DNA Barcoding of Tropical Tree Species of India

inferredcites →https://doi.org/10.1890/09-0267.1openalex-snapshot

Using DNA to assess errors in tropical tree identifications: How often are ecologists wrong and when does it matter?

inferredcites →https://doi.org/10.2307/25065638openalex-snapshot

300,000 species to identify: problems, progress, and prospects in DNA barcoding of land plants

inferredcites →https://doi.org/10.3390/ijms13078740openalex-snapshot

Sampling Strategy and Potential Utility of Indels for DNA Barcoding of Closely Related Plant Species: A Case Study in Taxus

inferredcites →https://doi.org/10.4337/9781849807005.00006openalex-snapshot

Global Biodiversity Conservation Priorities: An Expanded Review

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inferred← citeshttps://doi.org/10.1007/s11418-019-01365-wopenalex-snapshot

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inferred← citeshttps://doi.org/10.1038/s41598-017-13057-0openalex-snapshot

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inferred← citeshttps://doi.org/10.1038/srep15127openalex-snapshot

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inferred← citeshttps://doi.org/10.1038/srep46040openalex-snapshot

Replacing Sanger with Next Generation Sequencing to improve coverage and quality of reference DNA barcodes for plants

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Using floristics, modern systematics and phylogenetics for disentangling biodiversity hotspots across scales: a Mediterranean case study

inferred← citeshttps://doi.org/10.1080/14772000.2018.1546240openalex-snapshot

Plant core DNA barcode performance at a local scale: identification of the conifers of the state of Hidalgo, Mexico

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Anticancer agents and genetic identification of Pterospermum , an indigenous plant of Sarawak, Malaysia

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Root‐associated fungal communities are influenced more by soils than by plant‐host root traits in a Chinese tropical forest

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DNA barcoding of a complex genus, Aesculus L. (Sapindaceae) reveals lack of species-level resolution

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Molecular phylogeny of the Ficus virens complex (Moraceae)

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Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus)

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